Wall clock time and date at job start Wed Apr 1 2020 00:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 C 1.50699 * 109.47073 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00513 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99345 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00593 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99464 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47045 * 90.00453 * 10 8 6 12 12 H 1.48505 * 109.46693 * 210.00331 * 10 8 6 13 13 H 1.48499 * 109.47469 * 329.99881 * 10 8 6 14 14 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 15 15 C 1.46904 * 110.99716 * 274.99847 * 14 2 1 16 16 H 1.09001 * 109.46947 * 35.00190 * 15 14 2 17 17 C 1.53003 * 109.46880 * 154.99719 * 15 14 2 18 18 C 1.53000 * 109.46796 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47216 * 299.99949 * 18 17 15 20 20 H 1.08998 * 109.47114 * 300.00171 * 19 18 17 21 21 N 1.46500 * 109.47016 * 179.97438 * 19 18 17 22 22 C 1.34775 * 119.99748 * 155.00419 * 21 19 18 23 23 O 1.21283 * 120.00269 * 359.97438 * 22 21 19 24 24 C 1.50703 * 119.99740 * 180.02562 * 22 21 19 25 25 H 1.08997 * 110.33589 * 57.24806 * 24 22 21 26 26 C 1.54484 * 110.37293 * 294.99452 * 24 22 21 27 27 C 1.54509 * 104.06383 * 217.19338 * 26 24 22 28 28 C 1.54484 * 104.06082 * 359.97438 * 27 26 24 29 29 O 1.44421 * 104.80586 * 23.98346 * 28 27 26 30 30 C 1.52999 * 109.46848 * 60.00263 * 19 18 17 31 31 C 1.52992 * 109.46977 * 275.00016 * 15 14 2 32 32 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 33 33 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 34 34 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 36 36 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 37 37 H 1.08993 * 109.47092 * 300.00720 * 5 4 2 38 38 H 1.09007 * 109.46700 * 60.00493 * 5 4 2 39 39 H 0.97000 * 120.00240 * 179.97438 * 9 8 6 40 40 H 1.00900 * 110.99634 * 38.94573 * 14 2 1 41 41 H 1.08995 * 109.47009 * 299.99954 * 17 15 14 42 42 H 1.08998 * 109.47191 * 59.99998 * 17 15 14 43 43 H 1.08998 * 109.47219 * 60.00056 * 18 17 15 44 44 H 1.09003 * 109.47214 * 179.97438 * 18 17 15 45 45 H 0.97005 * 119.99942 * 334.99793 * 21 19 18 46 46 H 1.09002 * 110.50854 * 335.84055 * 26 24 22 47 47 H 1.08999 * 110.50794 * 98.54144 * 26 24 22 48 48 H 1.08994 * 110.50993 * 118.64245 * 27 26 24 49 49 H 1.09001 * 110.50745 * 241.35700 * 27 26 24 50 50 H 1.09002 * 110.36361 * 142.81187 * 28 27 26 51 51 H 1.08994 * 110.37448 * 265.03350 * 28 27 26 52 52 H 1.08998 * 109.47338 * 60.00045 * 30 19 18 53 53 H 1.09004 * 109.47194 * 179.97438 * 30 19 18 54 54 H 1.09007 * 109.47335 * 299.99442 * 31 15 14 55 55 H 1.08992 * 109.47608 * 60.00159 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3686 -1.8031 -3.2139 8 6 5.4183 -1.3593 -2.8163 9 7 6.2689 -0.7746 -2.0014 10 14 6.0408 -2.2387 -4.3423 11 1 6.0903 -1.2838 -5.4784 12 1 7.4023 -2.7729 -4.0849 13 1 5.1248 -3.3587 -4.6766 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2576 0.9329 2.2907 17 6 1.9770 -0.5797 3.6454 18 6 2.0431 0.3733 4.8405 19 6 3.3721 1.1311 4.8157 20 1 4.1966 0.4204 4.8717 21 7 3.4350 2.0441 5.9597 22 6 4.6301 2.4315 6.4476 23 8 5.6534 2.0239 5.9400 24 6 4.6949 3.3702 7.6248 25 1 4.1577 2.9495 8.4748 26 6 4.1082 4.7483 7.2466 27 6 5.0096 5.7576 7.9923 28 6 6.0338 4.8698 8.7334 29 8 6.0688 3.6386 7.9795 30 6 3.4775 1.9334 3.5172 31 6 3.4111 0.9808 2.3223 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.7516 -1.7716 -1.2056 36 1 1.6054 -0.2618 -2.1370 37 1 3.8532 0.4368 -1.3573 38 1 3.9995 -1.0729 -0.4260 39 1 7.2196 -0.8003 -2.1925 40 1 1.4495 -1.4979 1.4101 41 1 1.0305 -1.1199 3.6629 42 1 2.8018 -1.2901 3.7016 43 1 1.2186 1.0840 4.7845 44 1 1.9675 -0.1982 5.7656 45 1 2.6166 2.3699 6.3658 46 1 4.1677 4.9062 6.1697 47 1 3.0768 4.8314 7.5893 48 1 5.5147 6.4144 7.2842 49 1 4.4238 6.3397 8.7038 50 1 7.0159 5.3428 8.7334 51 1 5.7040 4.6819 9.7552 52 1 2.6529 2.6440 3.4612 53 1 4.4241 2.4736 3.4996 54 1 4.2360 0.2705 2.3786 55 1 3.4862 1.5524 1.3973 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488987.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:12 Heat of formation + Delta-G solvation = -137.579206 kcal Electronic energy + Delta-G solvation = -30123.067450 eV Core-core repulsion = 26157.283882 eV Total energy + Delta-G solvation = -3965.783568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.50468 -40.24931 -39.23851 -37.68617 -35.60170 -34.78223 -33.18917 -32.52280 -31.78179 -31.08067 -30.17864 -27.87548 -26.96006 -24.88287 -23.93655 -23.30568 -22.55488 -22.40880 -21.45876 -21.16056 -20.72790 -18.61067 -18.35419 -17.75097 -17.23201 -16.94443 -16.51380 -16.31056 -16.17763 -15.84636 -15.76422 -15.32006 -14.94816 -14.74162 -14.63536 -14.57217 -14.41567 -14.07273 -13.88595 -13.66546 -13.31184 -13.14625 -13.13251 -12.85980 -12.81259 -12.77662 -12.70905 -12.39495 -12.35803 -12.25504 -12.19239 -12.08706 -11.73311 -11.68370 -11.52974 -11.41358 -11.21814 -11.16601 -11.04401 -10.91348 -10.64925 -10.49891 -10.11309 -9.04791 -8.14276 -6.25527 1.37309 1.39766 1.50668 1.51218 1.86258 2.42318 3.05373 3.17549 3.27781 3.48009 3.65618 3.71050 3.73642 3.92348 4.07219 4.10543 4.16996 4.18966 4.22020 4.25785 4.36115 4.38772 4.42544 4.47632 4.50502 4.54241 4.67141 4.72119 4.79821 4.80543 4.83985 4.91982 4.99640 5.00785 5.04336 5.06732 5.08700 5.12886 5.15666 5.21182 5.25904 5.31462 5.36918 5.38981 5.48066 5.54597 5.59259 5.75480 5.90175 6.03594 6.33761 6.39265 6.53790 6.76756 6.95641 7.23255 7.42840 8.96704 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.002210 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.737794 B =12666.392118 C =14146.785212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.542 4.542 7 H 0.057 0.943 8 C -0.005 4.005 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.262 1.262 14 N -0.694 5.694 15 C 0.099 3.901 16 H 0.060 0.940 17 C -0.113 4.113 18 C -0.106 4.106 19 C 0.149 3.851 20 H 0.053 0.947 21 N -0.701 5.701 22 C 0.508 3.492 23 O -0.581 6.581 24 C 0.057 3.943 25 H 0.129 0.871 26 C -0.140 4.140 27 C -0.150 4.150 28 C 0.032 3.968 29 O -0.393 6.393 30 C -0.114 4.114 31 C -0.102 4.102 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.047 0.953 37 H -0.030 1.030 38 H 0.001 0.999 39 H 0.260 0.740 40 H 0.346 0.654 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.421 0.579 46 H 0.063 0.937 47 H 0.126 0.874 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.087 0.913 53 H 0.033 0.967 54 H 0.032 0.968 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 12.146 26.328 33.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.202 4.202 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.186 1.186 14 N -0.326 5.326 15 C -0.011 4.011 16 H 0.077 0.923 17 C -0.151 4.151 18 C -0.144 4.144 19 C 0.044 3.956 20 H 0.071 0.929 21 N -0.355 5.355 22 C 0.294 3.706 23 O -0.460 6.460 24 C -0.004 4.004 25 H 0.146 0.854 26 C -0.178 4.178 27 C -0.188 4.188 28 C -0.044 4.044 29 O -0.312 6.312 30 C -0.153 4.153 31 C -0.141 4.141 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.066 0.934 37 H -0.011 1.011 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.166 0.834 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.259 0.741 46 H 0.082 0.918 47 H 0.145 0.855 48 H 0.088 0.912 49 H 0.130 0.870 50 H 0.112 0.888 51 H 0.104 0.896 52 H 0.105 0.895 53 H 0.052 0.948 54 H 0.051 0.949 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.597 11.831 25.783 31.903 hybrid contribution 0.211 -0.075 -0.902 0.929 sum -14.386 11.755 24.881 31.052 Atomic orbital electron populations 1.22373 0.95053 1.02577 1.02501 1.21500 0.93446 0.96623 0.90231 0.92788 1.21467 0.96276 0.99175 0.95790 1.18787 0.92449 0.93419 0.94896 1.21838 0.92463 1.34310 1.09366 0.92493 1.26014 0.97486 0.96603 1.00103 1.70146 1.02501 1.45815 1.39052 0.85491 0.77542 0.79007 0.79256 1.19765 1.20994 1.18567 1.60325 1.58653 1.10007 1.03587 1.21458 0.95484 0.94021 0.90110 0.92256 1.21629 1.03110 0.97844 0.92522 1.21682 0.95098 0.98624 0.98979 1.20906 0.99653 0.90750 0.84298 0.92906 1.45755 1.08121 1.48488 1.33128 1.21011 0.83598 0.81168 0.84787 1.90759 1.36368 1.57108 1.61771 1.23100 0.85351 0.96285 0.95623 0.85388 1.22985 1.02263 0.90994 1.01572 1.22969 0.97360 0.98196 1.00260 1.23752 1.01472 0.83384 0.95757 1.89269 1.24871 1.43182 1.73840 1.21767 1.01423 0.98145 0.93992 1.21400 0.98358 0.97555 0.96784 0.92041 0.91389 0.91785 0.93312 0.93440 1.01115 0.98030 0.93172 0.83423 0.88888 0.92819 0.88372 0.89125 0.74086 0.91827 0.85546 0.91164 0.87027 0.88751 0.89634 0.89474 0.94781 0.94869 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.15 71.98 0.66 -3.27 16 2 C 0.09 3.05 2.40 44.91 0.11 3.16 16 3 H 0.05 1.97 7.11 -2.39 -0.02 1.95 16 4 C -0.09 -3.80 4.83 30.59 0.15 -3.65 16 5 C 0.04 2.35 4.86 29.85 0.15 2.50 16 6 C -0.54 -32.83 9.11 25.60 0.23 -32.60 16 7 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 8 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 9 N -0.93 -61.23 13.29 21.45 0.28 -60.95 16 10 Si 0.96 47.04 29.54 68.60 2.03 49.06 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 14 N -0.69 -21.93 5.51 -469.46 -2.59 -24.51 16 15 C 0.10 2.53 2.31 44.91 0.10 2.64 16 16 H 0.06 1.30 7.11 -2.39 -0.02 1.28 16 17 C -0.11 -2.17 5.19 30.60 0.16 -2.01 16 18 C -0.11 -1.48 5.39 30.60 0.16 -1.31 16 19 C 0.15 3.25 2.46 44.99 0.11 3.36 16 20 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 21 N -0.70 -11.61 5.06 -442.53 -2.24 -13.85 16 22 C 0.51 12.33 7.05 87.66 0.62 12.95 16 23 O -0.58 -22.19 16.22 15.33 0.25 -21.94 16 24 C 0.06 0.92 3.71 30.35 0.11 1.04 16 25 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 26 C -0.14 -1.36 6.61 31.61 0.21 -1.15 16 27 C -0.15 -1.31 7.09 31.61 0.22 -1.09 16 28 C 0.03 0.41 7.63 72.49 0.55 0.97 16 29 O -0.39 -9.27 10.91 -130.62 -1.43 -10.69 16 30 C -0.11 -3.02 5.49 30.58 0.17 -2.85 16 31 C -0.10 -3.38 5.41 30.58 0.17 -3.21 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.31 7.43 -2.39 -0.02 1.29 16 34 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 37 H -0.03 -1.85 8.14 -2.39 -0.02 -1.86 16 38 H 0.00 0.08 7.75 -2.38 -0.02 0.06 16 39 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.35 9.35 8.09 -89.69 -0.73 8.62 16 41 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.42 2.92 8.60 -92.70 -0.80 2.12 16 46 H 0.06 0.87 7.86 -2.39 -0.02 0.85 16 47 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 49 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 54 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 55 H 0.04 1.41 7.43 -2.39 -0.02 1.40 16 Total: -1.00 -88.37 427.51 -0.02 -88.39 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.67 Total: 18.87 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.34 Total: -24.38 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.54 Total: -99.31 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.18 Total: -32.63 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -88.37 -0.02 -88.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488987.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.187 kcal (2) G-P(sol) polarization free energy of solvation -88.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds