Wall clock time and date at job start Tue Mar 31 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 5 5 C 1.36936 * 119.99910 * 84.99534 * 4 2 1 6 6 H 1.07996 * 119.99948 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99722 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00278 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47350 * 89.99957 * 9 7 5 11 11 H 1.48498 * 109.46905 * 210.00287 * 9 7 5 12 12 H 1.48505 * 109.47191 * 329.99909 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 H 1.09004 * 109.49596 * 60.00025 * 13 2 1 15 15 C 1.53035 * 109.50040 * 299.93746 * 13 2 1 16 16 C 1.53036 * 109.54342 * 178.72003 * 15 13 2 17 17 C 1.53193 * 109.34219 * 61.30939 * 16 15 13 18 18 N 1.46930 * 108.77387 * 305.38342 * 17 16 15 19 19 C 1.34773 * 120.63349 * 233.62551 * 18 17 16 20 20 O 1.21278 * 120.00444 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99585 * 359.97438 * 19 18 17 22 22 O 1.42903 * 109.46844 * 179.97438 * 21 19 18 23 23 C 1.42908 * 114.00193 * 180.02562 * 22 21 19 24 24 C 1.52996 * 109.46895 * 270.00335 * 23 22 21 25 25 C 1.53004 * 109.46735 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47274 * 59.99941 * 25 24 23 27 27 C 1.53002 * 109.46834 * 299.99907 * 26 25 24 28 28 C 1.52993 * 109.47325 * 149.99709 * 23 22 21 29 29 C 1.46929 * 118.73617 * 53.61045 * 18 17 16 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00110 * 265.00363 * 4 2 1 34 34 H 0.96997 * 119.99556 * 179.97438 * 8 7 5 35 35 H 1.09010 * 109.45876 * 298.70453 * 15 13 2 36 36 H 1.08994 * 109.46593 * 58.65741 * 15 13 2 37 37 H 1.09005 * 109.46819 * 301.36348 * 16 15 13 38 38 H 1.08997 * 109.52762 * 181.29509 * 16 15 13 39 39 H 1.08998 * 109.58999 * 185.59595 * 17 16 15 40 40 H 1.09001 * 109.70327 * 65.23998 * 17 16 15 41 41 H 1.08994 * 109.47611 * 299.99652 * 21 19 18 42 42 H 1.08999 * 109.47201 * 59.99890 * 21 19 18 43 43 H 1.09003 * 109.46320 * 29.99940 * 23 22 21 44 44 H 1.08996 * 109.46978 * 299.99191 * 24 23 22 45 45 H 1.09001 * 109.47811 * 59.99926 * 24 23 22 46 46 H 1.08996 * 109.46971 * 299.99495 * 25 24 23 47 47 H 1.09007 * 109.46897 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47216 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.47016 * 59.99693 * 26 25 24 50 50 H 1.08999 * 109.47144 * 299.99707 * 27 26 25 51 51 H 1.09011 * 109.46867 * 179.97438 * 27 26 25 52 52 H 1.08998 * 109.47328 * 300.00116 * 28 23 22 53 53 H 1.08999 * 109.46771 * 60.00208 * 28 23 22 54 54 H 1.08997 * 109.58445 * 186.60011 * 29 18 17 55 55 H 1.09002 * 109.70365 * 66.24443 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.9234 -1.9393 -3.4505 9 14 2.7902 0.2700 -5.1183 10 1 4.1527 0.8542 -5.2031 11 1 2.5790 -0.6610 -6.2557 12 1 1.7808 1.3579 -5.1751 13 6 2.0401 -0.7212 1.2492 14 1 1.6769 -1.7490 1.2496 15 6 1.5316 0.0006 2.4992 16 6 2.0147 -0.7384 3.7492 17 6 3.5464 -0.7376 3.7789 18 7 4.0441 -1.2992 2.5157 19 6 4.9170 -2.3261 2.5175 20 8 5.3201 -2.7812 1.4681 21 6 5.3920 -2.9089 3.8235 22 8 6.3040 -3.9781 3.5642 23 6 6.8166 -4.6036 4.7425 24 6 8.0988 -3.8931 5.1804 25 6 8.6472 -4.5624 6.4423 26 6 8.9535 -6.0322 6.1480 27 6 7.6712 -6.7426 5.7101 28 6 7.1229 -6.0732 4.4477 29 6 3.5720 -0.7202 1.2506 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.2460 -2.3967 -4.2427 35 1 1.9149 1.0210 2.5104 36 1 0.4419 0.0224 2.4880 37 1 1.6519 -1.7661 3.7267 38 1 1.6333 -0.2373 4.6389 39 1 3.8960 -1.3466 4.6125 40 1 3.9111 0.2831 3.8939 41 1 5.8939 -2.1358 4.4052 42 1 4.5378 -3.2884 4.3841 43 1 6.0755 -4.5397 5.5393 44 1 8.8398 -3.9570 4.3836 45 1 7.8806 -2.8460 5.3906 46 1 7.9060 -4.4981 7.2389 47 1 9.5610 -4.0565 6.7541 48 1 9.3446 -6.5089 7.0469 49 1 9.6947 -6.0964 5.3513 50 1 6.9300 -6.6784 6.5067 51 1 7.8895 -7.7897 5.4999 52 1 6.2094 -6.5794 4.1357 53 1 7.8639 -6.1371 3.6508 54 1 3.9385 -1.3178 0.4160 55 1 3.9368 0.3025 1.1557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268171889.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:33 Heat of formation + Delta-G solvation = -117.194261 kcal Electronic energy + Delta-G solvation = -30556.495952 eV Core-core repulsion = 26591.596342 eV Total energy + Delta-G solvation = -3964.899610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.37844 -40.10328 -39.03575 -37.24243 -36.94028 -34.67356 -33.13028 -31.81097 -31.66944 -30.94150 -30.03495 -28.44062 -26.49276 -25.45595 -24.23201 -23.52071 -23.10705 -22.35304 -21.09661 -20.84004 -19.96879 -19.16095 -18.47196 -17.57821 -17.06757 -16.96538 -16.75369 -16.11116 -15.86465 -15.58073 -15.40096 -15.32613 -15.23664 -14.88263 -14.70202 -14.37801 -14.19534 -14.02379 -13.90919 -13.78115 -13.54288 -13.38900 -13.17218 -13.05923 -13.00449 -12.78121 -12.54515 -12.37849 -12.14459 -12.06698 -11.99917 -11.97247 -11.81795 -11.66866 -11.50091 -11.47641 -11.36496 -11.24491 -11.18442 -10.96457 -10.69755 -10.42306 -9.63476 -8.99320 -7.92176 -5.20912 1.43222 1.46324 1.54244 1.55274 1.71865 2.55764 2.81550 3.41087 3.49945 3.73684 3.77850 3.80921 3.87087 3.95264 4.05285 4.08454 4.13967 4.19351 4.20794 4.27365 4.31492 4.33628 4.35737 4.44952 4.55837 4.58102 4.61266 4.64709 4.67509 4.79100 4.87373 4.93892 4.94144 4.96476 5.03314 5.04668 5.07756 5.11903 5.19093 5.23021 5.24027 5.29111 5.30565 5.39153 5.39452 5.49807 5.51075 5.53858 5.56840 5.65068 6.17178 6.28762 6.45940 7.18203 7.33532 8.12235 8.33528 9.31535 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.002455 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.772627 B =11402.685540 C =12903.074309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.971 3.029 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.264 1.264 13 C -0.089 4.089 14 H 0.048 0.952 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.096 3.904 18 N -0.606 5.606 19 C 0.495 3.505 20 O -0.585 6.585 21 C 0.056 3.944 22 O -0.398 6.398 23 C 0.085 3.915 24 C -0.142 4.142 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.121 4.121 29 C 0.131 3.869 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.072 0.928 52 H 0.060 0.940 53 H 0.050 0.950 54 H 0.044 0.956 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -1.088 31.649 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.097 0.903 7 C -0.276 4.276 8 N -0.625 5.625 9 Si 0.801 3.199 10 H -0.218 1.218 11 H -0.226 1.226 12 H -0.189 1.189 13 C -0.109 4.109 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.025 4.025 18 N -0.340 5.340 19 C 0.284 3.716 20 O -0.464 6.464 21 C -0.023 4.023 22 O -0.317 6.317 23 C 0.028 3.972 24 C -0.179 4.179 25 C -0.149 4.149 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.159 4.159 29 C 0.008 3.992 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.198 0.802 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.079 0.921 53 H 0.069 0.931 54 H 0.063 0.937 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.840 -1.223 30.815 31.217 hybrid contribution 0.303 -0.198 -1.953 1.987 sum 5.143 -1.421 28.862 29.351 Atomic orbital electron populations 1.22314 0.97313 1.00536 1.01071 1.20508 0.93082 0.95009 0.85155 0.93414 1.42711 1.78380 1.10115 1.06590 1.19626 1.34353 0.94110 0.88230 0.90323 1.25607 1.03390 0.96830 1.01725 1.69868 1.52943 1.10474 1.29197 0.85161 0.77827 0.77475 0.79472 1.21793 1.22552 1.18884 1.21601 0.93461 0.99549 0.96309 0.93356 1.21625 1.01763 0.99339 0.92009 1.21931 0.94267 1.01445 0.98941 1.22222 0.95385 1.00856 0.83990 1.48250 1.43858 1.33274 1.08655 1.21251 0.78871 0.79726 0.91733 1.90771 1.58095 1.61489 1.36071 1.22363 0.95147 0.91895 0.92861 1.88069 1.61939 1.48877 1.32806 1.22403 0.95519 0.92661 0.86610 1.22053 0.97142 1.00128 0.98620 1.21486 1.01649 0.95358 0.96372 1.21608 0.97267 0.95694 1.01622 1.21495 0.97776 0.99327 0.96103 1.21641 1.01238 0.93790 0.99217 1.21308 0.94807 0.97613 0.85507 0.89881 0.94767 0.94606 0.80248 0.94405 0.90526 0.89913 0.92165 0.86766 0.86928 0.89210 0.87193 0.87210 0.89558 0.93224 0.91034 0.90280 0.90921 0.90209 0.92908 0.90333 0.90957 0.92073 0.93141 0.93749 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.14 71.98 0.66 -4.62 16 2 C 0.17 6.72 2.47 44.99 0.11 6.83 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.74 -39.15 4.52 -322.93 -1.46 -40.61 16 5 C -0.23 -13.38 9.93 84.03 0.83 -12.54 16 6 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 7 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 8 N -0.97 -64.58 13.06 21.65 0.28 -64.30 16 9 Si 0.97 48.88 29.55 68.60 2.03 50.91 16 10 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 12 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 13 C -0.09 -2.90 1.97 -10.72 -0.02 -2.92 16 14 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 15 C -0.11 -2.24 4.85 30.62 0.15 -2.09 16 16 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 17 C 0.10 1.46 6.34 86.36 0.55 2.01 16 18 N -0.61 -17.33 2.97 -818.90 -2.43 -19.76 16 19 C 0.50 16.80 7.77 87.66 0.68 17.48 16 20 O -0.59 -28.53 15.91 16.02 0.25 -28.28 16 21 C 0.06 1.23 4.57 71.24 0.33 1.56 16 22 O -0.40 -11.16 9.52 -129.94 -1.24 -12.40 16 23 C 0.08 1.56 2.61 30.59 0.08 1.64 16 24 C -0.14 -2.24 5.54 30.59 0.17 -2.07 16 25 C -0.11 -1.17 5.92 30.59 0.18 -0.99 16 26 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 27 C -0.11 -1.33 5.92 30.61 0.18 -1.15 16 28 C -0.12 -2.27 5.58 30.61 0.17 -2.10 16 29 C 0.13 4.81 5.47 86.36 0.47 5.28 16 30 H 0.08 2.13 6.40 -2.39 -0.02 2.11 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.37 21.83 7.62 -92.71 -0.71 21.12 16 34 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.08 1.53 6.36 -2.39 -0.02 1.51 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.94 5.93 -2.39 -0.01 0.92 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.59 7.67 -2.39 -0.02 1.57 16 42 H 0.11 1.62 7.63 -2.39 -0.02 1.60 16 43 H 0.09 1.10 7.79 -2.39 -0.02 1.09 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.99 7.87 -2.39 -0.02 0.97 16 46 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.04 2.21 6.51 -2.39 -0.02 2.19 16 55 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -85.78 418.89 2.95 -82.83 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.14 Total: 32.78 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.38 Total: -1.17 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -3.61 Total: -124.67 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.98 Total: -40.68 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -85.78 2.95 -82.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171889.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.363 kcal (2) G-P(sol) polarization free energy of solvation -85.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds