Wall clock time and date at job start Tue Mar 31 2020 23:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46785 * 2 1 4 4 C 1.53004 * 109.46902 * 119.99355 * 2 1 3 5 5 C 1.53001 * 109.47002 * 65.00608 * 4 2 1 6 6 O 1.42894 * 109.47617 * 179.97438 * 5 4 2 7 7 C 1.42893 * 114.00737 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47029 * 330.00146 * 7 6 5 9 9 C 1.52999 * 109.47223 * 89.99313 * 7 6 5 10 10 C 1.50699 * 109.47769 * 210.00012 * 7 6 5 11 11 O 1.21284 * 119.99560 * 353.56676 * 10 7 6 12 12 N 1.34774 * 120.00324 * 173.56356 * 10 7 6 13 13 C 1.46945 * 120.44022 * 176.02336 * 12 10 7 14 14 C 1.53597 * 108.52844 * 125.73433 * 13 12 10 15 15 H 1.09005 * 110.59466 * 172.16213 * 14 13 12 16 16 C 1.53359 * 108.69141 * 294.36053 * 14 13 12 17 17 C 1.53014 * 109.27280 * 60.29793 * 16 14 13 18 18 C 1.53011 * 109.79539 * 60.56791 * 17 16 14 19 19 C 1.53367 * 109.25170 * 299.42416 * 18 17 16 20 20 H 1.09000 * 111.08407 * 177.83898 * 19 18 17 21 21 C 1.46941 * 120.43986 * 356.00625 * 12 10 7 22 22 N 1.47565 * 107.99051 * 56.37956 * 19 18 17 23 23 C 1.36943 * 121.61155 * 122.27300 * 22 19 18 24 24 H 1.07997 * 119.99743 * 26.18491 * 23 22 19 25 25 C 1.38812 * 119.99735 * 206.18965 * 23 22 19 26 26 N 1.31608 * 120.00214 * 17.93467 * 25 23 22 27 27 Si 1.86798 * 119.99640 * 197.93815 * 25 23 22 28 28 H 1.48500 * 109.47395 * 59.99470 * 27 25 23 29 29 H 1.48492 * 109.47077 * 179.97438 * 27 25 23 30 30 H 1.48507 * 109.46950 * 299.99887 * 27 25 23 31 31 H 1.09004 * 109.46992 * 60.00454 * 1 2 3 32 32 H 1.09011 * 109.46848 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47533 * 300.00243 * 1 2 3 34 34 H 1.08998 * 109.47533 * 239.99757 * 2 1 3 35 35 H 1.09000 * 109.46878 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47169 * 299.99690 * 3 2 1 37 37 H 1.08998 * 109.47284 * 59.99605 * 3 2 1 38 38 H 1.08998 * 109.47491 * 305.00441 * 4 2 1 39 39 H 1.08997 * 109.47427 * 185.00040 * 4 2 1 40 40 H 1.08998 * 109.47134 * 59.99615 * 5 4 2 41 41 H 1.09005 * 109.46872 * 299.99842 * 5 4 2 42 42 H 1.08995 * 109.47518 * 305.56450 * 9 7 6 43 43 H 1.09010 * 109.46768 * 65.56299 * 9 7 6 44 44 H 1.09001 * 109.47156 * 185.55978 * 9 7 6 45 45 H 1.09001 * 109.62988 * 245.44606 * 13 12 10 46 46 H 1.08999 * 109.63127 * 6.02171 * 13 12 10 47 47 H 1.08994 * 109.50865 * 180.24359 * 16 14 13 48 48 H 1.09005 * 109.50618 * 300.32488 * 16 14 13 49 49 H 1.09002 * 109.41372 * 180.66181 * 17 16 14 50 50 H 1.08993 * 109.41752 * 300.52949 * 17 16 14 51 51 H 1.08995 * 109.50673 * 179.48972 * 18 17 16 52 52 H 1.08999 * 109.50548 * 59.35575 * 18 17 16 53 53 H 1.09000 * 109.62650 * 114.53301 * 21 12 10 54 54 H 1.08994 * 109.78064 * 354.05790 * 21 12 10 55 55 H 0.97005 * 120.00170 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 8 2.1120 -2.8691 2.3546 7 6 1.7852 -4.2596 2.3972 8 1 0.8476 -4.4288 1.8678 9 6 2.9006 -5.0663 1.7294 10 6 1.6382 -4.6974 3.8317 11 8 1.9108 -3.9304 4.7308 12 7 1.2039 -5.9413 4.1155 13 6 1.1397 -6.4080 5.5074 14 6 -0.2848 -6.9088 5.7891 15 1 -0.3360 -7.3897 6.7660 16 6 -1.2490 -5.7189 5.7086 17 6 -1.1838 -5.1100 4.3064 18 6 -1.5968 -6.1551 3.2679 19 6 -0.6336 -7.3465 3.3388 20 1 -0.9235 -8.1275 2.6359 21 6 0.7878 -6.8487 3.0372 22 7 -0.6465 -7.8614 4.7216 23 6 -0.9777 -9.1604 5.0009 24 1 -0.8284 -9.9278 4.2558 25 6 -1.5056 -9.4908 6.2415 26 7 -2.0148 -8.5524 7.0110 27 14 -1.4929 -11.2673 6.8188 28 1 -0.0924 -11.7571 6.8827 29 1 -2.1091 -11.3540 8.1670 30 1 -2.2665 -12.1030 5.8657 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 1.6053 -0.2616 2.1371 39 1 3.1262 -0.6443 1.2954 40 1 2.0699 -2.6549 0.3005 41 1 0.5489 -2.2723 1.1422 42 1 3.0741 -4.6833 0.7239 43 1 3.8153 -4.9758 2.3155 44 1 2.6073 -6.1146 1.6734 45 1 1.8496 -7.2221 5.6538 46 1 1.3783 -5.5849 6.1810 47 1 -2.2645 -6.0590 5.9109 48 1 -0.9630 -4.9683 6.4455 49 1 -1.8597 -4.2567 4.2502 50 1 -0.1655 -4.7798 4.1016 51 1 -1.5575 -5.7140 2.2720 52 1 -2.6114 -6.4945 3.4767 53 1 1.4703 -7.6972 2.9890 54 1 0.7956 -6.3181 2.0851 55 1 -2.3833 -8.7832 7.8781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269680708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:19 Heat of formation + Delta-G solvation = -60.556320 kcal Electronic energy + Delta-G solvation = -32345.171238 eV Core-core repulsion = 28382.727633 eV Total energy + Delta-G solvation = -3962.443605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.24974 -39.81700 -38.70285 -37.06883 -35.76012 -34.49588 -33.69386 -32.63627 -31.90823 -29.98070 -28.58844 -28.00345 -27.11978 -25.92314 -24.79553 -23.87663 -23.07796 -22.80881 -21.07037 -20.60700 -20.02281 -18.82211 -17.96017 -17.64231 -17.03570 -16.66768 -16.54894 -16.25727 -15.77990 -15.60479 -15.39613 -15.14668 -14.72766 -14.70309 -14.62361 -14.49025 -14.14117 -13.93467 -13.63330 -13.44357 -13.36296 -13.19826 -13.13504 -13.03232 -12.98784 -12.87161 -12.52905 -12.41939 -12.37981 -12.19441 -12.13498 -11.85585 -11.74298 -11.70087 -11.64972 -11.51513 -11.48394 -11.22729 -11.10674 -10.79689 -10.47565 -10.34504 -9.46816 -8.47283 -7.79047 -5.24155 1.49652 1.52929 1.56982 1.58142 1.78357 2.54061 2.80753 3.33177 3.45439 3.52134 3.85792 3.93041 3.99737 4.05249 4.11130 4.13968 4.15918 4.22655 4.27169 4.33593 4.37005 4.44854 4.47521 4.56562 4.58780 4.69834 4.75557 4.78578 4.81558 4.82946 4.86355 4.87226 4.90772 4.97116 5.03436 5.04026 5.10778 5.13270 5.14595 5.22860 5.26190 5.32618 5.33194 5.40423 5.46494 5.52387 5.54977 5.67355 5.72670 5.85396 6.16804 6.42131 6.51697 7.16036 7.18155 7.86686 8.44373 9.23871 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002759 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.975212 B =10147.472201 C =10336.883468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.112 4.112 5 C 0.053 3.947 6 O -0.388 6.388 7 C 0.075 3.925 8 H 0.108 0.892 9 C -0.167 4.167 10 C 0.510 3.490 11 O -0.579 6.579 12 N -0.586 5.586 13 C 0.105 3.895 14 C 0.177 3.823 15 H 0.082 0.918 16 C -0.103 4.103 17 C -0.137 4.137 18 C -0.117 4.117 19 C 0.142 3.858 20 H 0.092 0.908 21 C 0.096 3.904 22 N -0.593 5.593 23 C -0.250 4.250 24 H 0.075 0.925 25 C -0.050 4.050 26 N -0.926 5.926 27 Si 0.961 3.039 28 H -0.281 1.281 29 H -0.303 1.303 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.027 0.973 49 H 0.034 0.966 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.033 0.967 53 H 0.079 0.921 54 H 0.116 0.884 55 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 11.908 -18.787 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.023 4.023 6 O -0.307 6.307 7 C 0.014 3.986 8 H 0.125 0.875 9 C -0.225 4.225 10 C 0.300 3.700 11 O -0.459 6.459 12 N -0.320 5.320 13 C -0.019 4.019 14 C 0.070 3.930 15 H 0.100 0.900 16 C -0.142 4.142 17 C -0.175 4.175 18 C -0.156 4.156 19 C 0.035 3.965 20 H 0.110 0.890 21 C -0.027 4.027 22 N -0.314 5.314 23 C -0.380 4.380 24 H 0.093 0.907 25 C -0.246 4.246 26 N -0.572 5.572 27 Si 0.791 3.209 28 H -0.208 1.208 29 H -0.230 1.230 30 H -0.203 1.203 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.052 0.948 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.052 0.948 53 H 0.098 0.902 54 H 0.134 0.866 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.806 12.338 -18.034 23.203 hybrid contribution -0.715 -1.013 1.323 1.813 sum 7.091 11.326 -16.711 21.397 Atomic orbital electron populations 1.21953 0.95056 1.02087 1.02002 1.21031 0.96014 0.96525 0.97117 1.21829 1.01194 0.95340 1.02064 1.21573 1.01613 0.92943 0.98827 1.22910 0.98661 0.93301 0.87443 1.88003 1.78274 1.20129 1.44281 1.21985 1.01228 0.83739 0.91637 0.87482 1.22321 0.97369 1.00941 1.01822 1.20849 0.75850 0.81243 0.92041 1.90671 1.52069 1.53396 1.49754 1.48111 1.62637 1.13098 1.08141 1.22133 0.99195 0.98035 0.82529 1.20971 0.88952 0.88767 0.94320 0.90018 1.21610 0.99817 0.96719 0.96102 1.22108 1.02680 0.97206 0.95459 1.21911 0.98821 0.96469 0.98360 1.21526 0.92869 0.94622 0.87471 0.88955 1.22628 0.96866 0.93693 0.89534 1.44588 1.78183 1.07543 1.01091 1.19443 1.34148 0.84760 0.99615 0.90696 1.25653 0.98766 1.00283 0.99857 1.70129 1.42356 1.33114 1.11627 0.85434 0.77539 0.81290 0.76657 1.20761 1.22997 1.20305 0.91571 0.92387 0.93422 0.89767 0.92380 0.91533 0.93241 0.92855 0.91399 0.90884 0.92530 0.88630 0.92825 0.88860 0.92070 0.91504 0.94668 0.95412 0.94758 0.89552 0.89871 0.94807 0.90246 0.86591 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.95 71.98 0.64 -1.34 16 2 C -0.09 -1.13 2.92 -10.79 -0.03 -1.17 16 3 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 4 C -0.11 -1.98 5.05 30.60 0.15 -1.83 16 5 C 0.05 0.98 5.50 71.98 0.40 1.37 16 6 O -0.39 -10.61 9.53 -130.02 -1.24 -11.85 16 7 C 0.07 1.83 2.29 29.85 0.07 1.90 16 8 H 0.11 2.07 6.82 -2.39 -0.02 2.06 16 9 C -0.17 -3.00 9.16 71.98 0.66 -2.34 16 10 C 0.51 17.40 4.39 87.66 0.39 17.78 16 11 O -0.58 -25.29 15.89 15.92 0.25 -25.04 16 12 N -0.59 -19.68 1.65 -817.25 -1.35 -21.03 16 13 C 0.11 4.27 5.89 86.50 0.51 4.78 16 14 C 0.18 8.25 2.68 45.11 0.12 8.37 16 15 H 0.08 4.46 5.74 -2.38 -0.01 4.45 16 16 C -0.10 -4.73 5.57 30.72 0.17 -4.56 16 17 C -0.14 -5.21 5.55 30.60 0.17 -5.04 16 18 C -0.12 -3.96 5.59 30.72 0.17 -3.79 16 19 C 0.14 4.91 3.62 45.11 0.16 5.08 16 20 H 0.09 2.98 8.01 -2.39 -0.02 2.96 16 21 C 0.10 2.62 4.51 86.50 0.39 3.01 16 22 N -0.59 -26.85 2.54 -645.67 -1.64 -28.49 16 23 C -0.25 -12.61 9.73 84.03 0.82 -11.79 16 24 H 0.08 3.61 7.89 -2.91 -0.02 3.59 16 25 C -0.05 -2.66 5.01 84.86 0.43 -2.23 16 26 N -0.93 -52.75 10.97 21.65 0.24 -52.51 16 27 Si 0.96 43.48 29.59 68.60 2.03 45.51 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 30 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.74 6.57 -2.38 -0.02 0.72 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.07 0.98 7.77 -2.39 -0.02 0.97 16 41 H 0.06 0.99 6.51 -2.38 -0.02 0.98 16 42 H 0.09 1.21 7.77 -2.39 -0.02 1.19 16 43 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.09 1.39 5.88 -2.39 -0.01 1.38 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.07 2.88 6.98 -2.39 -0.02 2.86 16 47 H 0.03 1.83 8.08 -2.39 -0.02 1.81 16 48 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.09 3.19 2.50 -3.47 -0.01 3.19 16 51 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 53 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 54 H 0.12 2.18 4.83 -2.39 -0.01 2.16 16 55 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -68.55 402.90 5.02 -63.53 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.85 Total: 22.75 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.88 Total: 7.13 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -2.75 Total: -102.04 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.99 Total: -36.88 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.55 5.02 -63.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269680708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.974 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds