Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47634 * 2 1 4 4 C 1.53005 * 109.47468 * 239.99761 * 2 1 3 5 5 C 1.50697 * 109.46800 * 65.00371 * 4 2 1 6 6 O 1.21284 * 120.00265 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.47158 * 120.97925 * 359.97438 * 7 5 4 9 9 C 1.53292 * 108.38531 * 230.51266 * 8 7 5 10 10 O 1.42956 * 109.22263 * 307.69756 * 9 8 7 11 11 C 1.42965 * 114.16838 * 62.58092 * 10 9 8 12 12 H 1.08997 * 109.50975 * 57.34346 * 11 10 9 13 13 C 1.52998 * 109.51512 * 177.49413 * 11 10 9 14 14 N 1.46503 * 109.46979 * 299.99954 * 13 11 10 15 15 C 1.36934 * 119.99739 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00640 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99993 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47481 * 90.00048 * 19 17 15 21 21 H 1.48502 * 109.47123 * 210.00345 * 19 17 15 22 22 H 1.48502 * 109.46817 * 329.99888 * 19 17 15 23 23 C 1.47149 * 120.98517 * 179.97438 * 7 5 4 24 24 C 1.53005 * 109.47140 * 120.00038 * 2 1 3 25 25 C 1.52998 * 109.46979 * 300.00243 * 24 2 1 26 26 C 1.52997 * 109.47325 * 179.97438 * 25 24 2 27 27 C 1.53003 * 109.46934 * 59.99767 * 26 25 24 28 28 C 1.52998 * 109.47304 * 300.00245 * 27 26 25 29 29 C 1.52998 * 109.47384 * 180.02562 * 24 2 1 30 30 H 1.08996 * 109.47675 * 300.00190 * 1 2 3 31 31 H 1.09007 * 109.46842 * 59.99769 * 1 2 3 32 32 H 1.08991 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47152 * 305.00792 * 4 2 1 34 34 H 1.08998 * 109.47416 * 185.00236 * 4 2 1 35 35 H 1.09002 * 109.68029 * 110.78736 * 8 7 5 36 36 H 1.09003 * 109.70935 * 350.25632 * 8 7 5 37 37 H 1.09000 * 109.51123 * 187.77017 * 9 8 7 38 38 H 1.09005 * 109.55129 * 67.64730 * 9 8 7 39 39 H 1.08999 * 109.47114 * 59.99903 * 13 11 10 40 40 H 1.09001 * 109.47191 * 180.02562 * 13 11 10 41 41 H 0.96997 * 119.99974 * 0.02562 * 14 13 11 42 42 H 0.96997 * 119.99793 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.68426 * 9.76054 * 23 7 5 44 44 H 1.09001 * 109.67886 * 249.21077 * 23 7 5 45 45 H 1.09004 * 109.47006 * 59.99892 * 24 2 1 46 46 H 1.09004 * 109.46965 * 299.99674 * 25 24 2 47 47 H 1.09004 * 109.47239 * 59.99453 * 25 24 2 48 48 H 1.08997 * 109.47119 * 300.00397 * 26 25 24 49 49 H 1.09002 * 109.47337 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.47511 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46977 * 60.00076 * 27 26 25 52 52 H 1.09004 * 109.46965 * 299.99838 * 28 27 26 53 53 H 1.09000 * 109.46938 * 179.97438 * 28 27 26 54 54 H 1.09002 * 109.46975 * 299.99910 * 29 24 2 55 55 H 1.08991 * 109.47409 * 60.00082 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0869 -2.3633 7 7 1.9846 -0.3919 -3.7001 8 6 2.7487 -1.6389 -3.8627 9 6 3.9454 -1.3569 -4.7782 10 8 3.4828 -0.7347 -5.9793 11 6 2.8582 0.5354 -5.7774 12 1 3.5530 1.2066 -5.2727 13 6 2.4621 1.1309 -7.1300 14 7 3.6589 1.3018 -7.9575 15 6 3.5500 1.8219 -9.2196 16 1 2.5820 2.1064 -9.6048 17 6 4.6839 1.9834 -10.0040 18 7 5.8636 1.6361 -9.5347 19 14 4.5355 2.6934 -11.7254 20 1 4.6701 4.1710 -11.6647 21 1 5.6084 2.1336 -12.5860 22 1 3.2100 2.3400 -12.2939 23 6 1.6062 0.3505 -4.9130 24 6 2.0400 -0.7213 1.2493 25 6 1.5299 -0.0001 2.4985 26 6 2.0393 -0.7216 3.7477 27 6 3.5694 -0.7221 3.7481 28 6 4.0794 -1.4434 2.4989 29 6 3.5699 -0.7208 1.2497 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7996 -1.2055 35 1 2.1141 -2.4024 -4.3127 36 1 3.1030 -1.9823 -2.8907 37 1 4.4455 -2.2940 -5.0229 38 1 4.6448 -0.6928 -4.2702 39 1 1.7657 0.4597 -7.6326 40 1 1.9864 2.0993 -6.9753 41 1 4.5283 1.0459 -7.6117 42 1 6.6559 1.7493 -10.0826 43 1 1.2039 1.3251 -4.6364 44 1 0.8564 -0.2123 -5.4689 45 1 1.6766 -1.7490 1.2493 46 1 1.8933 1.0276 2.4985 47 1 0.4399 0.0000 2.4984 48 1 1.6757 -1.7492 3.7475 49 1 1.6763 -0.2075 4.6377 50 1 3.9324 -1.2358 4.6383 51 1 3.9330 0.3054 3.7483 52 1 3.7157 -2.4709 2.4987 53 1 5.1694 -1.4433 2.4989 54 1 3.9336 -1.2344 0.3597 55 1 3.9329 0.3069 1.2499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273323207.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = -117.561250 kcal Electronic energy + Delta-G solvation = -30396.932772 eV Core-core repulsion = 26432.017248 eV Total energy + Delta-G solvation = -3964.915524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.57368 -40.15190 -39.25540 -36.67054 -35.81585 -35.60984 -33.93181 -32.03596 -31.71054 -30.53477 -29.48092 -28.69609 -26.90532 -24.99276 -24.33433 -23.74976 -23.18655 -22.28115 -21.09699 -20.60791 -19.90781 -19.24642 -18.31508 -17.71847 -17.10428 -16.83683 -16.69096 -16.25595 -15.98927 -15.86231 -15.50596 -15.09079 -15.04614 -14.93708 -14.71494 -14.54835 -14.38469 -14.17366 -14.08025 -13.98716 -13.41083 -13.26090 -13.10199 -12.99052 -12.79580 -12.67357 -12.61247 -12.31251 -12.26461 -12.05778 -12.00877 -11.97848 -11.90741 -11.87271 -11.59935 -11.53819 -11.24880 -11.16821 -10.96457 -10.91411 -10.68000 -10.56987 -9.59486 -9.01869 -7.94743 -5.24395 1.47042 1.49719 1.58074 1.59472 1.84129 2.55951 2.76169 3.38741 3.43508 3.58080 3.71078 3.79590 3.89747 3.92785 3.99802 4.02238 4.09021 4.17538 4.21340 4.34158 4.37941 4.44032 4.47016 4.48250 4.53838 4.58583 4.66036 4.68500 4.71271 4.72593 4.75821 4.78925 4.84479 4.88634 4.92845 4.95888 5.04959 5.07781 5.11281 5.22892 5.26502 5.31323 5.32930 5.36979 5.40435 5.45476 5.47465 5.51495 5.61175 5.70150 6.23318 6.27567 6.35230 7.13032 7.32745 8.06501 8.31815 9.28956 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023685 B = 0.001954 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.918934 B =14323.838692 C =14745.673912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 H 0.052 0.948 4 C -0.131 4.131 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.618 5.618 8 C 0.076 3.924 9 C 0.035 3.965 10 O -0.388 6.388 11 C 0.089 3.911 12 H 0.046 0.954 13 C 0.160 3.840 14 N -0.739 5.739 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.969 5.969 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.095 3.905 24 C -0.072 4.072 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.120 4.120 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.050 0.950 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.052 0.948 52 H 0.069 0.931 53 H 0.062 0.938 54 H 0.074 0.926 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -12.180 29.227 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.170 4.170 5 C 0.300 3.700 6 O -0.457 6.457 7 N -0.352 5.352 8 C -0.045 4.045 9 C -0.042 4.042 10 O -0.307 6.307 11 C 0.030 3.970 12 H 0.064 0.936 13 C 0.033 3.967 14 N -0.382 5.382 15 C -0.380 4.380 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.193 1.193 23 C -0.029 4.029 24 C -0.090 4.090 25 C -0.154 4.154 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.155 4.155 29 C -0.157 4.157 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.087 0.913 53 H 0.080 0.920 54 H 0.093 0.907 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.013 -11.668 28.978 32.250 hybrid contribution 0.482 0.844 -0.925 1.342 sum -7.531 -10.824 28.054 30.998 Atomic orbital electron populations 1.21936 0.95275 1.01804 1.01755 1.20867 0.95960 0.98777 0.92916 0.92949 1.21930 1.04254 1.00625 0.90165 1.21504 0.78158 0.85315 0.85001 1.90657 1.41862 1.26594 1.86560 1.48340 1.55852 1.25516 1.05481 1.22684 0.93445 0.85381 1.03034 1.23250 0.95516 0.99501 0.85897 1.88102 1.77556 1.33285 1.31773 1.22422 0.93553 0.85367 0.95652 0.93638 1.20773 0.89966 0.97030 0.88978 1.42392 1.05170 1.76270 1.14380 1.19674 0.93771 1.32770 0.91797 0.90446 1.25639 0.95113 1.03344 1.02871 1.69842 0.98168 1.55432 1.38522 0.85071 0.77206 0.77694 0.79348 1.21323 1.22015 1.19339 1.22001 0.96386 0.98787 0.85704 1.21129 0.95298 0.99782 0.92800 1.21629 1.00548 0.98913 0.94324 1.21518 0.95621 1.00898 0.97388 1.21561 0.95784 1.00453 0.98193 1.21528 1.00269 0.99562 0.94133 1.21705 0.94933 1.00530 0.98580 0.92341 0.93707 0.91987 0.86185 0.86711 0.89156 0.85077 0.85522 0.93150 0.95219 0.94158 0.79272 0.93978 0.89317 0.89900 0.89863 0.93197 0.91635 0.91459 0.92076 0.91672 0.92894 0.91266 0.91955 0.90738 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.58 71.98 0.62 -2.01 16 2 C -0.07 -1.04 1.62 -10.79 -0.02 -1.06 16 3 H 0.05 1.11 7.96 -2.39 -0.02 1.09 16 4 C -0.13 -1.83 3.33 29.85 0.10 -1.74 16 5 C 0.51 12.03 7.43 87.66 0.65 12.68 16 6 O -0.58 -18.43 13.43 -3.04 -0.04 -18.47 16 7 N -0.62 -14.42 3.02 -817.41 -2.47 -16.89 16 8 C 0.08 1.25 6.54 86.35 0.56 1.81 16 9 C 0.04 0.80 6.98 72.08 0.50 1.30 16 10 O -0.39 -13.50 10.13 -148.98 -1.51 -15.01 16 11 C 0.09 3.12 2.86 30.68 0.09 3.21 16 12 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 13 C 0.16 6.77 5.96 86.38 0.51 7.29 16 14 N -0.74 -39.86 5.50 -343.44 -1.89 -41.75 16 15 C -0.25 -14.44 9.99 84.04 0.84 -13.60 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 18 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 19 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C 0.10 2.75 5.92 86.34 0.51 3.26 16 24 C -0.07 -0.80 1.78 -10.79 -0.02 -0.82 16 25 C -0.12 -1.41 4.85 30.59 0.15 -1.26 16 26 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 27 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16 28 C -0.12 -1.11 5.93 30.61 0.18 -0.93 16 29 C -0.12 -1.29 4.86 30.61 0.15 -1.14 16 30 H 0.06 0.95 6.43 -2.39 -0.02 0.94 16 31 H 0.04 1.07 5.95 -2.38 -0.01 1.06 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 1.07 8.01 -2.39 -0.02 1.06 16 34 H 0.11 1.20 5.69 -2.39 -0.01 1.19 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 1.09 6.06 -2.39 -0.01 1.08 16 37 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.38 21.72 7.54 -92.71 -0.70 21.02 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.09 2.78 7.08 -2.39 -0.02 2.76 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.07 0.79 6.43 -2.38 -0.02 0.77 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 52 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 53 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 54 H 0.07 0.64 6.32 -2.39 -0.02 0.63 16 55 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.63 412.02 2.22 -72.41 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.15 Total: 30.41 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.66 Total: 0.82 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -4.07 Total: -119.43 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.55 Total: -33.48 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -74.63 2.22 -72.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273323207.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.155 kcal (2) G-P(sol) polarization free energy of solvation -74.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds