Wall clock time and date at job start Wed Apr 1 2020 00:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46857 * 2 1 4 4 C 1.36936 * 120.00174 * 263.90047 * 3 2 1 5 5 H 1.07997 * 120.00233 * 184.03483 * 4 3 2 6 6 C 1.38816 * 119.99939 * 4.03499 * 4 3 2 7 7 N 1.31620 * 119.99813 * 25.52975 * 6 4 3 8 8 Si 1.86793 * 120.00336 * 205.52732 * 6 4 3 9 9 H 1.48504 * 109.46982 * 94.98546 * 8 6 4 10 10 H 1.48503 * 109.47400 * 214.98207 * 8 6 4 11 11 H 1.48501 * 109.47016 * 334.98582 * 8 6 4 12 12 C 1.46504 * 119.99932 * 83.90013 * 3 2 1 13 13 C 1.52989 * 109.47284 * 269.99690 * 12 3 2 14 14 C 1.53042 * 109.46241 * 175.00040 * 13 12 3 15 15 C 1.53192 * 109.31562 * 181.38544 * 14 13 12 16 16 N 1.46920 * 108.77748 * 305.36685 * 15 14 13 17 17 C 1.34779 * 120.63180 * 233.58306 * 16 15 14 18 18 O 1.21281 * 119.99781 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99938 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46930 * 184.65175 * 19 17 16 21 21 C 1.53006 * 109.47290 * 177.98387 * 20 19 17 22 22 O 1.42891 * 109.47230 * 297.98760 * 20 19 17 23 23 C 1.52998 * 109.47011 * 57.98810 * 20 19 17 24 24 C 1.53004 * 117.50051 * 248.61887 * 23 20 19 25 25 C 1.53001 * 60.00110 * 252.50967 * 24 23 20 26 26 C 1.46928 * 118.73665 * 53.85978 * 16 15 14 27 27 C 1.53045 * 109.46483 * 295.07049 * 13 12 3 28 28 H 1.09003 * 109.46747 * 299.99412 * 1 2 3 29 29 H 1.08991 * 109.47435 * 59.99912 * 1 2 3 30 30 H 1.08998 * 109.46763 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46863 * 239.99895 * 2 1 3 32 32 H 1.08997 * 109.47160 * 119.99741 * 2 1 3 33 33 H 0.97001 * 120.00424 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46745 * 150.00120 * 12 3 2 35 35 H 1.08993 * 109.47191 * 30.00624 * 12 3 2 36 36 H 1.09001 * 109.46126 * 55.03249 * 13 12 3 37 37 H 1.08998 * 109.49642 * 61.43443 * 14 13 12 38 38 H 1.09000 * 109.52452 * 301.35700 * 14 13 12 39 39 H 1.08997 * 109.58369 * 185.57560 * 15 14 13 40 40 H 1.09005 * 109.70320 * 65.22397 * 15 14 13 41 41 H 1.08998 * 109.47368 * 64.64764 * 19 17 16 42 42 H 1.09004 * 109.47225 * 304.64805 * 19 17 16 43 43 H 1.09001 * 109.47156 * 174.62791 * 21 20 19 44 44 H 1.08994 * 109.47015 * 294.63616 * 21 20 19 45 45 H 1.09002 * 109.46635 * 54.62835 * 21 20 19 46 46 H 0.96698 * 114.00218 * 59.99989 * 22 20 19 47 47 H 1.09005 * 115.55452 * 34.33190 * 23 20 19 48 48 H 1.09003 * 117.49263 * 0.02562 * 24 23 20 49 49 H 1.09002 * 117.49896 * 145.01863 * 24 23 20 50 50 H 1.08992 * 117.50177 * 252.50388 * 25 24 23 51 51 H 1.09007 * 117.49710 * 107.48691 * 25 24 23 52 52 H 1.08996 * 109.58815 * 65.93081 * 26 16 15 53 53 H 1.09004 * 109.58694 * 186.35278 * 26 16 15 54 54 H 1.08994 * 109.49433 * 298.56426 * 27 13 12 55 55 H 1.08997 * 109.49256 * 58.62962 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3653 1.9848 -1.1792 5 1 2.7864 2.9793 -1.1733 6 6 2.1758 1.3184 -2.3821 7 7 1.2528 0.3851 -2.4790 8 14 3.2307 1.7461 -3.8631 9 1 4.3841 0.8134 -3.9353 10 1 2.4187 1.6257 -5.1006 11 1 3.7281 3.1390 -3.7308 12 6 2.1353 2.1168 1.2616 13 6 0.8239 2.8509 1.5475 14 6 0.9017 3.5167 2.9232 15 6 -0.4255 4.2216 3.2208 16 7 -0.7274 5.1459 2.1194 17 6 -0.9900 6.4448 2.3652 18 8 -0.9789 6.8605 3.5045 19 6 -1.2985 7.3802 1.2247 20 6 -1.4425 8.8064 1.7595 21 6 -1.7060 9.7635 0.5953 22 8 -2.5351 8.8623 2.6787 23 6 -0.1532 9.2156 2.4744 24 6 -0.2131 9.3931 3.9929 25 6 -0.0976 10.6181 3.0834 26 6 -0.7438 4.6259 0.7452 27 6 0.5924 3.9178 0.4749 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.1201 -0.0804 -3.3196 34 1 2.9476 2.8399 1.1865 35 1 2.3447 1.4181 2.0715 36 1 -0.0012 2.1387 1.5350 37 1 1.7107 4.2471 2.9287 38 1 1.0901 2.7595 3.6843 39 1 -0.3418 4.7795 4.1534 40 1 -1.2226 3.4831 3.3070 41 1 -2.2295 7.0756 0.7466 42 1 -0.4879 7.3453 0.4967 43 1 -1.9031 10.7627 0.9838 44 1 -0.8324 9.7926 -0.0559 45 1 -2.5702 9.4170 0.0285 46 1 -2.4357 8.2794 3.4438 47 1 0.7673 8.8144 2.0501 48 1 -1.1710 9.2179 4.4826 49 1 0.6680 9.1085 4.5680 50 1 0.8593 11.1394 3.0603 51 1 -0.9798 11.2492 2.9749 52 1 -1.5650 3.9183 0.6321 53 1 -0.8702 5.4507 0.0439 54 1 1.4043 4.6444 0.5034 55 1 0.5610 3.4456 -0.5070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281831023.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:23 Heat of formation + Delta-G solvation = -52.190231 kcal Electronic energy + Delta-G solvation = -31828.150768 eV Core-core repulsion = 27866.069944 eV Total energy + Delta-G solvation = -3962.080824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.62039 -39.98059 -38.67968 -37.27825 -35.89681 -34.60615 -33.30429 -32.61444 -31.96840 -30.92425 -29.31903 -27.89728 -25.72793 -24.58994 -23.96619 -23.67610 -23.07934 -22.09063 -21.34613 -20.76406 -19.90985 -18.52707 -18.25664 -17.70661 -17.23911 -16.86201 -16.60780 -16.18494 -15.73480 -15.36286 -15.29975 -15.14256 -14.90703 -14.75946 -14.39356 -14.12511 -13.82038 -13.73359 -13.54440 -13.53119 -13.25948 -13.10859 -13.07244 -12.96613 -12.86924 -12.70411 -12.59309 -12.37024 -12.22002 -12.17114 -11.93282 -11.89909 -11.82647 -11.64636 -11.35265 -11.33443 -11.19269 -11.05045 -10.94039 -10.73452 -10.46984 -10.19416 -9.58300 -8.74292 -7.72973 -4.98289 1.50062 1.56299 1.60358 1.63610 2.05237 2.60098 2.94818 3.31747 3.35933 3.49799 3.70210 3.71852 3.80487 3.92697 4.05646 4.11288 4.18791 4.21163 4.24683 4.38298 4.42446 4.46555 4.55882 4.62521 4.64805 4.72476 4.75084 4.82569 4.83352 4.88694 4.90794 4.92679 4.99102 5.04609 5.10878 5.13581 5.15476 5.20845 5.22202 5.28543 5.29437 5.32062 5.36333 5.38939 5.47223 5.69437 5.71903 5.76378 5.94124 6.16356 6.43644 6.46283 6.76532 7.20686 7.30348 8.04406 8.44400 9.29572 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.002935 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.190245 B = 9536.572550 C =10416.523823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.158 3.842 3 N -0.609 5.609 4 C -0.231 4.231 5 H 0.072 0.928 6 C -0.050 4.050 7 N -0.915 5.915 8 Si 0.940 3.060 9 H -0.299 1.299 10 H -0.303 1.303 11 H -0.275 1.275 12 C 0.155 3.845 13 C -0.100 4.100 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.605 5.605 17 C 0.514 3.486 18 O -0.563 6.563 19 C -0.166 4.166 20 C 0.176 3.824 21 C -0.135 4.135 22 O -0.575 6.575 23 C -0.178 4.178 24 C -0.151 4.151 25 C -0.170 4.170 26 C 0.112 3.888 27 C -0.112 4.112 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.014 0.986 33 H 0.242 0.758 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.383 0.617 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.067 0.933 53 H 0.099 0.901 54 H 0.049 0.951 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 14.269 9.640 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.033 3.967 3 N -0.330 5.330 4 C -0.361 4.361 5 H 0.090 0.910 6 C -0.245 4.245 7 N -0.563 5.563 8 Si 0.771 3.229 9 H -0.227 1.227 10 H -0.230 1.230 11 H -0.200 1.200 12 C 0.029 3.971 13 C -0.121 4.121 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.337 5.337 17 C 0.304 3.696 18 O -0.444 6.444 19 C -0.206 4.206 20 C 0.135 3.865 21 C -0.192 4.192 22 O -0.386 6.386 23 C -0.196 4.196 24 C -0.188 4.188 25 C -0.207 4.207 26 C -0.010 4.010 27 C -0.151 4.151 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.236 0.764 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.112 0.888 52 H 0.085 0.915 53 H 0.117 0.883 54 H 0.068 0.932 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.428 14.814 9.678 18.509 hybrid contribution 0.828 -0.828 -0.716 1.372 sum -4.600 13.987 8.962 17.237 Atomic orbital electron populations 1.22057 0.98699 0.98324 0.99595 1.20908 0.92936 0.84928 0.97948 1.44361 1.75736 1.10617 1.02326 1.19383 1.32169 0.99860 0.84698 0.90973 1.25155 0.99880 1.00384 0.99059 1.70291 1.31614 1.29768 1.24631 0.85643 0.79271 0.77547 0.80448 1.22747 1.23024 1.19965 1.20930 0.95054 0.93970 0.87175 1.21761 0.99825 0.96725 0.93779 1.21845 0.96829 0.99542 0.97311 1.21553 0.96902 0.92056 0.90141 1.48236 1.68549 1.08524 1.08439 1.20941 0.75606 0.82304 0.90758 1.90565 1.53875 1.75864 1.24081 1.22530 1.05620 0.94712 0.97702 1.20460 0.84610 0.92197 0.89240 1.21757 1.03101 0.98676 0.95658 1.86396 1.44801 1.69287 1.38159 1.22868 0.99032 1.00909 0.96836 1.22618 1.02388 1.01415 0.92377 1.23002 1.03144 0.90497 1.04042 1.21928 0.98036 0.99247 0.81797 1.21819 0.95911 0.97073 1.00269 0.95111 0.93201 0.95378 0.91350 0.96819 0.94777 0.94270 0.93435 0.92274 0.92486 0.89926 0.89648 0.91346 0.86987 0.86702 0.91656 0.89606 0.91405 0.76393 0.88463 0.89326 0.90061 0.88241 0.88753 0.91466 0.88268 0.93242 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 9.56 71.98 0.69 -4.72 16 2 C 0.16 7.17 5.65 86.38 0.49 7.66 16 3 N -0.61 -27.21 2.41 -702.02 -1.69 -28.90 16 4 C -0.23 -11.39 7.62 84.03 0.64 -10.75 16 5 H 0.07 3.51 7.94 -2.91 -0.02 3.49 16 6 C -0.05 -2.59 4.97 84.86 0.42 -2.17 16 7 N -0.91 -49.07 8.73 21.65 0.19 -48.88 16 8 Si 0.94 42.71 29.62 68.60 2.03 44.74 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.15 5.59 5.21 86.37 0.45 6.04 16 13 C -0.10 -3.07 2.28 -10.77 -0.02 -3.09 16 14 C -0.12 -2.89 5.36 30.67 0.16 -2.73 16 15 C 0.12 2.76 6.43 86.36 0.56 3.32 16 16 N -0.61 -14.53 2.97 -818.08 -2.43 -16.95 16 17 C 0.51 12.25 7.20 87.66 0.63 12.88 16 18 O -0.56 -15.34 10.80 14.40 0.16 -15.19 16 19 C -0.17 -3.15 3.37 29.85 0.10 -3.05 16 20 C 0.18 3.50 0.92 -10.79 -0.01 3.49 16 21 C -0.13 -2.17 8.61 71.98 0.62 -1.55 16 22 O -0.57 -13.71 12.11 -131.54 -1.59 -15.31 16 23 C -0.18 -3.66 4.04 -10.79 -0.04 -3.71 16 24 C -0.15 -3.31 8.03 30.60 0.25 -3.06 16 25 C -0.17 -3.16 9.73 30.60 0.30 -2.86 16 26 C 0.11 2.75 6.37 86.51 0.55 3.30 16 27 C -0.11 -3.48 4.97 30.82 0.15 -3.33 16 28 H 0.03 1.17 5.92 -2.39 -0.01 1.15 16 29 H 0.05 2.42 6.73 -2.39 -0.02 2.41 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 3.58 5.52 -2.39 -0.01 3.56 16 32 H 0.01 0.57 7.98 -2.39 -0.02 0.55 16 33 H 0.24 12.97 8.31 -92.71 -0.77 12.20 16 34 H 0.04 1.43 8.04 -2.38 -0.02 1.41 16 35 H 0.05 1.60 7.95 -2.39 -0.02 1.58 16 36 H 0.06 1.99 5.75 -2.39 -0.01 1.97 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.09 7.01 -2.39 -0.02 2.08 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.11 1.91 8.09 -2.39 -0.02 1.89 16 42 H 0.11 1.89 7.46 -2.38 -0.02 1.87 16 43 H 0.06 1.07 7.48 -2.39 -0.02 1.05 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.38 9.47 5.22 -74.06 -0.39 9.09 16 47 H 0.10 2.06 8.11 -2.38 -0.02 2.04 16 48 H 0.09 2.09 6.28 -2.39 -0.01 2.08 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.09 1.74 7.67 -2.38 -0.02 1.73 16 52 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 53 H 0.10 2.01 5.90 -2.38 -0.01 1.99 16 54 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 55 H 0.07 2.73 6.26 -2.39 -0.01 2.71 16 Total: -1.00 -56.31 403.32 3.07 -53.24 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.48 Total: 31.58 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.93 Total: -4.34 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.93 Total: -94.73 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.44 Total: -30.49 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -56.31 3.07 -53.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281831023.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.049 kcal (2) G-P(sol) polarization free energy of solvation -56.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds