Wall clock time and date at job start Tue Mar 31 2020 23:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 O 1.42900 * 109.47003 * 240.00323 * 2 1 3 5 5 C 1.42901 * 114.00285 * 90.00350 * 4 2 1 6 6 C 1.50470 * 109.63310 * 90.96852 * 5 4 2 7 7 C 1.54066 * 112.49875 * 213.86048 * 6 5 4 8 8 C 1.54065 * 112.81762 * 318.28617 * 7 6 5 9 9 C 1.50473 * 112.49668 * 318.28045 * 8 7 6 10 10 C 1.54242 * 108.52431 * 94.15076 * 9 8 7 11 11 C 1.45537 * 112.40484 * 280.01487 * 10 9 8 12 12 C 1.50694 * 109.47411 * 119.99855 * 2 1 3 13 13 O 1.21280 * 119.99834 * 119.99738 * 12 2 1 14 14 N 1.34777 * 120.00201 * 300.00667 * 12 2 1 15 15 C 1.46505 * 119.99888 * 359.97438 * 14 12 2 16 16 C 1.46503 * 120.00157 * 179.97438 * 14 12 2 17 17 C 1.53780 * 113.61139 * 219.13204 * 16 14 12 18 18 C 1.53947 * 87.01879 * 220.04741 * 17 16 14 19 19 N 1.46500 * 113.53968 * 270.81335 * 18 17 16 20 20 C 1.36937 * 120.00016 * 252.49325 * 19 18 17 21 21 H 1.07995 * 119.99970 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99867 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00456 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47103 * 60.00504 * 24 22 20 26 26 H 1.48506 * 109.47469 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47408 * 300.00328 * 24 22 20 28 28 C 1.53779 * 113.61296 * 121.52778 * 16 14 12 29 29 H 1.09006 * 109.47162 * 60.00155 * 1 2 3 30 30 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46989 * 300.00153 * 1 2 3 32 32 H 1.09003 * 109.77966 * 330.47973 * 5 4 2 33 33 H 1.08997 * 108.87385 * 334.63990 * 6 5 4 34 34 H 1.09001 * 108.87633 * 93.08176 * 6 5 4 35 35 H 1.09005 * 108.81522 * 197.41965 * 7 6 5 36 36 H 1.09002 * 108.81156 * 79.14553 * 7 6 5 37 37 H 1.08999 * 108.87394 * 197.50477 * 8 7 6 38 38 H 1.09002 * 108.79987 * 79.00662 * 8 7 6 39 39 H 1.09006 * 109.62936 * 334.44242 * 9 8 7 40 40 H 1.08998 * 109.78811 * 213.95756 * 9 8 7 41 41 H 1.09000 * 108.89613 * 159.26169 * 10 9 8 42 42 H 1.08998 * 108.89249 * 40.76919 * 10 9 8 43 43 H 1.09001 * 108.89677 * 301.18243 * 11 10 9 44 44 H 1.09004 * 108.81712 * 182.63359 * 11 10 9 45 45 H 1.09003 * 109.47066 * 90.00077 * 15 14 12 46 46 H 1.08992 * 109.47197 * 210.00736 * 15 14 12 47 47 H 1.09002 * 109.46811 * 330.00784 * 15 14 12 48 48 H 1.08998 * 112.85026 * 350.32600 * 16 14 12 49 49 H 1.08997 * 113.61787 * 334.56893 * 17 16 14 50 50 H 1.09002 * 113.61350 * 105.47374 * 17 16 14 51 51 H 1.09006 * 113.74580 * 139.94565 * 18 17 16 52 52 H 0.97002 * 120.00220 * 72.49110 * 19 18 17 53 53 H 0.96999 * 120.00687 * 179.97438 * 23 22 20 54 54 H 1.09000 * 113.61029 * 254.52295 * 28 16 14 55 55 H 1.08997 * 113.61872 * 25.43214 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 3.6120 0.7034 -2.2968 7 6 3.7110 2.1367 -2.8530 8 6 2.8269 2.3580 -4.0952 9 6 2.8746 1.1960 -5.0502 10 6 1.6962 0.2527 -4.7333 11 6 1.9687 -0.6125 -3.5952 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 0.8648 0.9414 2.5890 16 6 2.1947 -0.9409 3.6507 17 6 1.1585 -1.0158 4.7845 18 6 2.3193 -0.7335 5.7555 19 7 2.9957 -1.9446 6.2266 20 6 2.8176 -2.3710 7.5156 21 1 2.1781 -1.8147 8.1848 22 6 3.4581 -3.5188 7.9618 23 7 4.2371 -4.1971 7.1461 24 14 3.2145 -4.1008 9.7200 25 1 1.7748 -4.3795 9.9542 26 1 4.0019 -5.3397 9.9450 27 1 3.6736 -3.0459 10.6588 28 6 3.0335 -0.0470 4.5793 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.5019 1.0187 -2.2467 33 1 3.9931 0.6942 -1.2757 34 1 4.2294 0.0447 -2.9076 35 1 4.7484 2.3397 -3.1191 36 1 3.4063 2.8373 -2.0754 37 1 3.1656 3.2548 -4.6139 38 1 1.7967 2.5062 -3.7713 39 1 3.8158 0.6600 -4.9279 40 1 2.7893 1.5570 -6.0751 41 1 1.4950 -0.3668 -5.6074 42 1 0.8121 0.8525 -4.5171 43 1 2.8572 -1.2068 -3.8083 44 1 1.1214 -1.2834 -3.4527 45 1 -0.1833 0.6438 2.6221 46 1 1.1227 1.4667 3.5085 47 1 1.0286 1.6001 1.7361 48 1 2.6645 -1.8981 3.4246 49 1 0.4148 -0.2197 4.7498 50 1 0.7162 -2.0045 4.9071 51 1 2.0582 -0.0523 6.5654 52 1 3.5698 -2.4445 5.6254 53 1 4.6850 -4.9990 7.4579 54 1 4.1026 -0.2547 4.5364 55 1 2.8034 1.0145 4.4884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284789899.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:44 Heat of formation + Delta-G solvation = -75.145527 kcal Electronic energy + Delta-G solvation = -30645.582347 eV Core-core repulsion = 26682.506107 eV Total energy + Delta-G solvation = -3963.076240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.62427 -40.50101 -39.42341 -37.66227 -36.35252 -34.96541 -33.43482 -32.91996 -31.79516 -30.98745 -28.08603 -26.74345 -26.44851 -25.77562 -25.58850 -24.99528 -23.54183 -21.69889 -20.79896 -20.29016 -19.71346 -19.32199 -18.50860 -17.76377 -17.51859 -16.69113 -16.53270 -16.29302 -16.09306 -15.79167 -15.56663 -15.22795 -15.14689 -14.97128 -14.52396 -14.33169 -14.15973 -13.99566 -13.83064 -13.57626 -13.48102 -13.33854 -13.27032 -13.18055 -13.03314 -12.73980 -12.72242 -12.52112 -12.32685 -12.20541 -12.13503 -11.83184 -11.80571 -11.67745 -11.60523 -11.34776 -11.31689 -11.22867 -11.03856 -10.91178 -10.75557 -10.39927 -9.58697 -9.05397 -7.95828 -5.26675 1.46389 1.50449 1.52376 1.56574 1.76353 2.54902 2.77723 3.35558 3.42653 3.64652 3.69059 3.70905 3.84060 3.84594 3.87073 4.01769 4.05440 4.16430 4.24079 4.25343 4.26038 4.29576 4.31921 4.38045 4.44906 4.51081 4.58143 4.68982 4.74730 4.77855 4.78772 4.85407 4.92526 4.99100 5.02691 5.04173 5.05652 5.10255 5.21014 5.23233 5.24229 5.27252 5.31894 5.32637 5.34198 5.36657 5.45145 5.51137 5.56315 5.69326 6.19442 6.25744 6.46719 7.16197 7.29561 8.05703 8.27532 9.27592 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.002021 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.716183 B =13853.981858 C =14093.363942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.113 0.887 4 O -0.386 6.386 5 C 0.090 3.910 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.112 4.112 11 C -0.111 4.111 12 C 0.497 3.503 13 O -0.586 6.586 14 N -0.595 5.595 15 C 0.057 3.943 16 C 0.127 3.873 17 C -0.159 4.159 18 C 0.153 3.847 19 N -0.725 5.725 20 C -0.243 4.243 21 H 0.086 0.914 22 C -0.082 4.082 23 N -0.974 5.974 24 Si 0.980 3.020 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.273 1.273 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.118 0.882 50 H 0.041 0.959 51 H 0.083 0.917 52 H 0.369 0.631 53 H 0.250 0.750 54 H 0.045 0.955 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 21.626 -24.600 34.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.019 3.981 3 H 0.130 0.870 4 O -0.306 6.306 5 C 0.033 3.967 6 C -0.181 4.181 7 C -0.149 4.149 8 C -0.157 4.157 9 C -0.159 4.159 10 C -0.150 4.150 11 C -0.149 4.149 12 C 0.286 3.714 13 O -0.465 6.465 14 N -0.327 5.327 15 C -0.084 4.084 16 C 0.023 3.977 17 C -0.200 4.200 18 C 0.043 3.957 19 N -0.363 5.363 20 C -0.374 4.374 21 H 0.104 0.896 22 C -0.274 4.274 23 N -0.625 5.625 24 Si 0.808 3.192 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.199 1.199 28 C -0.187 4.187 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.136 0.864 50 H 0.060 0.940 51 H 0.101 0.899 52 H 0.200 0.800 53 H 0.059 0.941 54 H 0.064 0.936 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.453 20.915 -24.477 33.850 hybrid contribution 0.820 -1.411 0.810 1.823 sum -9.632 19.503 -23.667 32.145 Atomic orbital electron populations 1.22507 0.91403 1.03441 1.05900 1.21965 0.96443 0.96238 0.83435 0.86970 1.88079 1.86600 1.36046 1.19831 1.22072 0.96409 0.92812 0.85357 1.21922 0.97352 0.98062 1.00741 1.21863 1.00706 0.94333 0.97973 1.21378 1.00447 0.98597 0.95229 1.21395 0.98288 0.96553 0.99659 1.20426 0.99033 0.98390 0.97107 1.20497 1.02227 0.98871 0.93305 1.21383 0.79734 0.84453 0.85857 1.90708 1.39942 1.28795 1.87092 1.47922 1.50976 1.29726 1.04117 1.22401 0.94858 0.85787 1.05304 1.22293 0.96976 0.95605 0.82853 1.24138 0.98230 1.01972 0.95658 1.21276 0.92343 0.88268 0.93830 1.42446 1.55116 1.27662 1.11033 1.19706 1.22468 1.06057 0.89204 0.89623 1.25708 1.00390 0.98833 1.02488 1.69856 1.36008 1.19666 1.36942 0.85121 0.77487 0.77040 0.79546 1.20158 1.22648 1.19895 1.23840 0.98659 1.00757 0.95474 0.88866 0.93416 0.87635 0.89441 0.93605 0.92495 0.91970 0.91329 0.91071 0.91207 0.92579 0.90613 0.91044 0.90774 0.92929 0.91920 0.90077 0.88887 0.88244 0.91786 0.86363 0.94007 0.89897 0.79984 0.94113 0.93592 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 9.16 71.98 0.66 -1.94 16 2 C 0.08 1.73 2.07 29.85 0.06 1.79 16 3 H 0.11 1.69 7.06 -2.39 -0.02 1.67 16 4 O -0.39 -10.27 9.07 -129.94 -1.18 -11.45 16 5 C 0.09 1.61 2.07 30.20 0.06 1.68 16 6 C -0.14 -2.60 5.04 30.14 0.15 -2.45 16 7 C -0.11 -1.33 5.85 31.31 0.18 -1.15 16 8 C -0.12 -1.06 5.32 30.14 0.16 -0.90 16 9 C -0.12 -1.20 5.61 30.20 0.17 -1.03 16 10 C -0.11 -1.20 5.26 28.74 0.15 -1.05 16 11 C -0.11 -1.83 4.93 28.74 0.14 -1.69 16 12 C 0.50 15.93 7.15 87.66 0.63 16.55 16 13 O -0.59 -26.52 15.97 16.01 0.26 -26.26 16 14 N -0.59 -15.96 3.08 -819.65 -2.53 -18.49 16 15 C 0.06 0.78 7.40 127.77 0.95 1.73 16 16 C 0.13 4.42 4.09 45.52 0.19 4.61 16 17 C -0.16 -5.23 7.34 31.18 0.23 -5.00 16 18 C 0.15 5.90 4.57 45.57 0.21 6.11 16 19 N -0.73 -37.82 5.31 -320.18 -1.70 -39.52 16 20 C -0.24 -13.64 9.97 84.03 0.84 -12.80 16 21 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 22 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 23 N -0.97 -62.46 13.06 21.65 0.28 -62.17 16 24 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 C -0.15 -4.80 7.36 31.12 0.23 -4.57 16 29 H 0.09 0.91 8.00 -2.38 -0.02 0.89 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.04 4.53 -2.39 -0.01 1.03 16 32 H 0.09 1.10 6.50 -2.39 -0.02 1.09 16 33 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 34 H 0.06 1.15 6.63 -2.39 -0.02 1.13 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.51 6.63 -2.39 -0.02 0.50 16 39 H 0.06 0.70 6.98 -2.38 -0.02 0.68 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.63 7.47 -2.39 -0.02 0.61 16 43 H 0.05 1.01 7.47 -2.39 -0.02 0.99 16 44 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 45 H 0.08 0.85 6.95 -2.39 -0.02 0.83 16 46 H 0.09 1.06 6.33 -2.39 -0.02 1.04 16 47 H 0.10 0.78 6.01 -2.39 -0.01 0.76 16 48 H 0.06 2.96 7.21 -2.39 -0.02 2.95 16 49 H 0.12 2.79 6.81 -2.39 -0.02 2.77 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.08 2.94 8.10 -2.38 -0.02 2.92 16 52 H 0.37 21.50 7.90 -92.71 -0.73 20.77 16 53 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 54 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 55 H 0.12 2.87 6.82 -2.39 -0.02 2.85 16 Total: -1.00 -81.49 410.77 2.77 -78.72 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.14 Total: 34.70 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.47 Total: -4.52 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.94 Total: -120.19 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.92 Total: -37.71 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -81.49 2.77 -78.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284789899.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.574 kcal (2) G-P(sol) polarization free energy of solvation -81.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds