Wall clock time and date at job start Tue Mar 31 2020 22:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47545 * 2 1 4 4 N 1.46507 * 109.47137 * 239.99758 * 2 1 3 5 5 C 1.36933 * 119.99834 * 74.72539 * 4 2 1 6 6 H 1.08003 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99908 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99967 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46984 * 90.00144 * 9 7 5 11 11 H 1.48495 * 109.47523 * 210.00405 * 9 7 5 12 12 H 1.48501 * 109.47402 * 330.00451 * 9 7 5 13 13 C 1.53001 * 109.46863 * 120.00286 * 2 1 3 14 14 H 1.09002 * 109.70530 * 73.65087 * 13 2 1 15 15 C 1.53193 * 109.58435 * 313.29388 * 13 2 1 16 16 C 1.53047 * 109.30901 * 185.58116 * 15 13 2 17 17 C 1.53037 * 109.53851 * 61.36669 * 16 15 13 18 18 C 1.53186 * 109.31137 * 298.63050 * 17 16 15 19 19 N 1.46927 * 108.77681 * 54.64120 * 18 17 16 20 20 C 1.34779 * 120.63488 * 126.41227 * 19 18 17 21 21 O 1.21274 * 120.00069 * 174.43722 * 20 19 18 22 22 C 1.50699 * 119.99791 * 354.42963 * 20 19 18 23 23 O 1.42894 * 109.46862 * 180.02562 * 22 20 19 24 24 C 1.42906 * 113.99805 * 180.02562 * 23 22 20 25 25 C 1.53002 * 109.46949 * 180.02562 * 24 23 22 26 26 C 1.54262 * 110.03296 * 292.90427 * 25 24 23 27 27 C 1.54963 * 104.15971 * 217.13685 * 26 25 24 28 28 C 1.54888 * 102.77759 * 37.88833 * 27 26 25 29 29 C 1.53877 * 110.02818 * 175.68816 * 25 24 23 30 30 H 1.09007 * 109.47124 * 59.99953 * 1 2 3 31 31 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47228 * 300.00443 * 1 2 3 33 33 H 0.96999 * 119.99576 * 254.73480 * 4 2 1 34 34 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.50047 * 65.63143 * 15 13 2 36 36 H 1.08998 * 109.49658 * 305.53047 * 15 13 2 37 37 H 1.09007 * 109.45330 * 181.38506 * 16 15 13 38 38 H 1.09005 * 109.46071 * 301.34233 * 16 15 13 39 39 H 1.09001 * 109.49866 * 58.58734 * 17 16 15 40 40 H 1.09006 * 109.49371 * 178.68244 * 17 16 15 41 41 H 1.09005 * 109.58483 * 174.42086 * 18 17 16 42 42 H 1.08994 * 109.59109 * 294.85037 * 18 17 16 43 43 H 1.08996 * 109.47518 * 300.00547 * 22 20 19 44 44 H 1.09007 * 109.47186 * 60.00278 * 22 20 19 45 45 H 1.09005 * 109.46768 * 299.99744 * 24 23 22 46 46 H 1.08995 * 109.47531 * 59.99600 * 24 23 22 47 47 H 1.09000 * 110.01322 * 54.29924 * 25 24 23 48 48 H 1.09002 * 110.48723 * 335.78294 * 26 25 24 49 49 H 1.09001 * 110.48620 * 98.42619 * 26 25 24 50 50 H 1.08997 * 110.72172 * 279.56987 * 27 26 25 51 51 H 1.09004 * 110.92227 * 156.29498 * 27 26 25 52 52 H 1.08997 * 110.48939 * 203.39829 * 28 27 26 53 53 H 1.09006 * 110.59841 * 80.81468 * 28 27 26 54 54 H 1.09006 * 110.03125 * 238.56794 * 29 25 24 55 55 H 1.08994 * 110.03367 * 359.94760 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.9520 -0.0748 -2.4174 6 1 1.5400 0.9203 -2.4987 7 6 2.4152 -0.7290 -3.5507 8 7 2.9177 -1.9414 -3.4516 9 14 2.3254 0.1114 -5.2165 10 1 3.5748 0.8786 -5.4519 11 1 2.1657 -0.9128 -6.2798 12 1 1.1641 1.0367 -5.2422 13 6 2.0399 -0.7213 1.2492 14 1 1.8901 -1.7955 1.1403 15 6 1.2779 -0.2186 2.4795 16 6 1.8855 -0.8393 3.7396 17 6 3.3483 -0.4084 3.8681 18 6 4.1337 -0.9132 2.6537 19 7 3.4704 -0.4395 1.4312 20 6 4.1610 0.2401 0.4944 21 8 3.6292 0.5379 -0.5540 22 6 5.5940 0.6303 0.7499 23 8 6.1043 1.3372 -0.3823 24 6 7.4639 1.7544 -0.2426 25 6 7.9017 2.4975 -1.5064 26 6 7.9494 1.5240 -2.7021 27 6 9.1792 1.9902 -3.5216 28 6 10.1941 2.3867 -2.4208 29 6 9.3282 3.0461 -1.3276 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.3885 -1.5843 -1.1230 34 1 3.2410 -2.3987 -4.2435 35 1 0.2297 -0.5069 2.4011 36 1 1.3539 0.8672 2.5358 37 1 1.3294 -0.5024 4.6146 38 1 1.8316 -1.9258 3.6715 39 1 3.4047 0.6793 3.9114 40 1 3.7737 -0.8317 4.7781 41 1 5.1520 -0.5259 2.6903 42 1 4.1546 -2.0029 2.6592 43 1 5.6449 1.2703 1.6306 44 1 6.1904 -0.2666 0.9177 45 1 7.5539 2.4174 0.6179 46 1 8.0989 0.8807 -0.0961 47 1 7.2112 3.3142 -1.7170 48 1 8.0883 0.5001 -2.3551 49 1 7.0400 1.6060 -3.2973 50 1 8.9261 2.8501 -4.1416 51 1 9.5705 1.1770 -4.1330 52 1 10.9223 3.0975 -2.8114 53 1 10.6977 1.5036 -2.0274 54 1 9.3302 4.1290 -1.4525 55 1 9.7082 2.7837 -0.3403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877594.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:52 Heat of formation + Delta-G solvation = -67.284690 kcal Electronic energy + Delta-G solvation = -31981.259978 eV Core-core repulsion = 28018.524609 eV Total energy + Delta-G solvation = -3962.735369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.46239 -39.78199 -38.44713 -37.55450 -36.80868 -34.23761 -33.62081 -31.56361 -31.43719 -29.64588 -29.44478 -28.73670 -26.18599 -25.63735 -25.11278 -24.12204 -21.86590 -21.58808 -21.40336 -20.70034 -20.09177 -18.80855 -18.06714 -17.47081 -17.22024 -16.76609 -16.61094 -16.29941 -16.06722 -15.67097 -15.46461 -15.28302 -15.01273 -14.82039 -14.60662 -14.24958 -14.16685 -14.11392 -13.87088 -13.58691 -13.44009 -13.15126 -12.96910 -12.81900 -12.72831 -12.55323 -12.37294 -12.14914 -12.12311 -12.01286 -11.96001 -11.92292 -11.72393 -11.67032 -11.58718 -11.54286 -11.37975 -11.33533 -11.14883 -10.78080 -10.57913 -9.75963 -9.32069 -8.56533 -7.76996 -4.93390 1.38459 1.44062 1.48950 1.94008 2.02630 2.64969 2.94048 3.56756 3.63276 3.67123 3.70623 3.85758 3.89568 3.95106 4.07300 4.14510 4.16492 4.26747 4.34114 4.36402 4.37887 4.38655 4.42654 4.48454 4.52317 4.62953 4.65980 4.72284 4.75384 4.77884 4.82349 4.87125 4.88544 4.96345 5.03996 5.05651 5.08399 5.10140 5.16900 5.20781 5.21053 5.29774 5.31555 5.42851 5.43288 5.44894 5.49636 5.57021 5.62289 5.93863 6.24771 6.44921 6.72703 7.50477 7.69471 8.30449 8.52727 9.48743 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.004665 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.253520 B = 6000.712805 C = 8981.723724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.179 3.821 3 H 0.031 0.969 4 N -0.696 5.696 5 C -0.161 4.161 6 H 0.050 0.950 7 C -0.092 4.092 8 N -0.979 5.979 9 Si 0.952 3.048 10 H -0.304 1.304 11 H -0.295 1.295 12 H -0.274 1.274 13 C 0.153 3.847 14 H 0.053 0.947 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.101 3.899 19 N -0.614 5.614 20 C 0.461 3.539 21 O -0.485 6.485 22 C 0.056 3.944 23 O -0.399 6.399 24 C 0.066 3.934 25 C -0.093 4.093 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.117 4.117 29 C -0.108 4.108 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.362 0.638 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.027 0.973 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.083 0.917 53 H 0.072 0.928 54 H 0.077 0.923 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 6.443 20.009 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.071 3.929 3 H 0.049 0.951 4 N -0.334 5.334 5 C -0.294 4.294 6 H 0.068 0.932 7 C -0.281 4.281 8 N -0.634 5.634 9 Si 0.784 3.216 10 H -0.233 1.233 11 H -0.222 1.222 12 H -0.200 1.200 13 C 0.049 3.951 14 H 0.071 0.929 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.020 4.020 19 N -0.352 5.352 20 C 0.246 3.754 21 O -0.355 6.355 22 C -0.024 4.024 23 O -0.319 6.319 24 C -0.010 4.010 25 C -0.111 4.111 26 C -0.158 4.158 27 C -0.164 4.164 28 C -0.154 4.154 29 C -0.145 4.145 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.193 0.807 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.101 0.899 53 H 0.091 0.909 54 H 0.096 0.904 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.926 6.832 19.128 23.063 hybrid contribution 0.007 -0.261 -1.519 1.541 sum 10.933 6.571 17.609 21.743 Atomic orbital electron populations 1.22436 0.97999 1.00855 1.00559 1.20495 0.91457 0.95450 0.85493 0.95142 1.42305 1.72357 1.16139 1.02591 1.19153 1.27648 0.96728 0.85915 0.93185 1.25144 1.04757 0.97928 1.00280 1.69783 1.51801 1.14230 1.27634 0.85391 0.77109 0.77231 0.81839 1.23307 1.22194 1.19976 1.21360 0.80302 0.98173 0.95279 0.92885 1.21976 0.99750 1.00762 0.93378 1.21530 0.96114 1.00739 0.96931 1.21902 0.95429 1.01585 0.97562 1.21979 0.97203 0.99674 0.83193 1.47990 1.09438 1.56966 1.20796 1.20992 0.89160 0.80974 0.84283 1.91237 1.68804 1.50957 1.24508 1.22286 0.92335 0.97775 0.89994 1.88082 1.28649 1.75112 1.40010 1.22877 0.81574 0.98284 0.98223 1.21787 0.98248 0.97308 0.93790 1.22344 0.97729 0.98847 0.96892 1.22547 0.95099 1.00837 0.97918 1.22345 0.97103 1.00982 0.95003 1.22103 0.91555 1.00585 1.00264 0.95379 0.93570 0.90437 0.80682 0.95195 0.89739 0.91955 0.89714 0.91616 0.91635 0.88095 0.88471 0.91269 0.88074 0.89787 0.90991 0.92276 0.92173 0.92691 0.95401 0.91669 0.91475 0.89875 0.90901 0.90428 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.09 8.60 71.98 0.62 -5.47 16 2 C 0.18 7.86 1.84 44.99 0.08 7.94 16 3 H 0.03 1.52 6.31 -2.39 -0.02 1.51 16 4 N -0.70 -38.93 3.29 -322.93 -1.06 -40.00 16 5 C -0.16 -10.14 8.28 84.03 0.70 -9.45 16 6 H 0.05 3.19 7.83 -2.91 -0.02 3.17 16 7 C -0.09 -5.95 5.50 84.86 0.47 -5.48 16 8 N -0.98 -66.53 13.06 21.65 0.28 -66.25 16 9 Si 0.95 53.16 29.55 68.60 2.03 55.19 16 10 H -0.30 -17.26 7.11 99.48 0.71 -16.56 16 11 H -0.30 -16.20 7.11 99.48 0.71 -15.50 16 12 H -0.27 -14.53 7.11 99.48 0.71 -13.83 16 13 C 0.15 5.11 2.64 44.97 0.12 5.23 16 14 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 15 C -0.12 -2.82 4.37 30.67 0.13 -2.69 16 16 C -0.12 -1.90 5.88 30.62 0.18 -1.72 16 17 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 18 C 0.10 1.99 6.35 86.36 0.55 2.54 16 19 N -0.61 -19.26 2.97 -795.03 -2.36 -21.62 16 20 C 0.46 18.18 7.50 87.66 0.66 18.83 16 21 O -0.48 -25.65 9.52 16.03 0.15 -25.50 16 22 C 0.06 1.67 4.77 71.24 0.34 2.01 16 23 O -0.40 -14.79 9.71 -129.94 -1.26 -16.05 16 24 C 0.07 1.71 4.98 71.98 0.36 2.07 16 25 C -0.09 -2.46 3.19 -10.07 -0.03 -2.50 16 26 C -0.12 -3.82 6.22 31.69 0.20 -3.62 16 27 C -0.13 -3.03 6.91 31.91 0.22 -2.81 16 28 C -0.12 -2.05 6.83 31.67 0.22 -1.84 16 29 C -0.11 -1.92 6.46 31.32 0.20 -1.72 16 30 H 0.03 1.19 8.02 -2.38 -0.02 1.17 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.32 6.45 -2.38 -0.02 2.31 16 33 H 0.36 21.93 7.68 -92.71 -0.71 21.22 16 34 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.08 1.85 6.71 -2.39 -0.02 1.83 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.10 1.49 5.93 -2.38 -0.01 1.47 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 2.21 7.92 -2.39 -0.02 2.19 16 44 H 0.08 2.14 7.72 -2.38 -0.02 2.12 16 45 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.06 1.35 8.02 -2.39 -0.02 1.33 16 47 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.82 7.77 -2.39 -0.02 1.80 16 49 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 54 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 55 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -85.88 412.36 3.10 -82.78 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.13 Total: 31.74 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.19 Total: -0.30 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -3.14 Total: -127.87 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.11 Total: -41.54 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 2.03 Total: 55.19 kcal Total: -85.88 3.10 -82.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877594.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.495 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds