Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47064 * 2 1 4 4 N 1.46498 * 109.47202 * 120.00875 * 2 1 3 5 5 C 1.36939 * 119.99439 * 274.99397 * 4 2 1 6 6 H 1.07998 * 120.00334 * 0.02562 * 5 4 2 7 7 C 1.38820 * 119.99780 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99872 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47088 * 89.99623 * 9 7 5 11 11 H 1.48503 * 109.46815 * 210.00026 * 9 7 5 12 12 H 1.48498 * 109.47005 * 329.99971 * 9 7 5 13 13 C 1.53001 * 109.46845 * 240.00529 * 2 1 3 14 14 H 1.09002 * 109.58569 * 53.85752 * 13 2 1 15 15 C 1.53198 * 109.58621 * 293.57493 * 13 2 1 16 16 C 1.53084 * 109.29166 * 185.71843 * 15 13 2 17 17 C 1.53037 * 109.65728 * 61.15359 * 16 15 13 18 18 C 1.53195 * 109.31423 * 298.69833 * 17 16 15 19 19 N 1.46919 * 108.77431 * 54.63494 * 18 17 16 20 20 C 1.34777 * 120.62814 * 126.37295 * 19 18 17 21 21 O 1.21281 * 119.99858 * 184.97498 * 20 19 18 22 22 C 1.50704 * 120.00341 * 4.97658 * 20 19 18 23 23 O 1.42896 * 109.47176 * 179.97438 * 22 20 19 24 24 C 1.42899 * 113.99927 * 179.97438 * 23 22 20 25 25 C 1.52997 * 109.47347 * 179.97438 * 24 23 22 26 26 C 1.54268 * 110.03278 * 292.91189 * 25 24 23 27 27 C 1.54967 * 104.15858 * 217.13426 * 26 25 24 28 28 C 1.54891 * 102.77841 * 37.88612 * 27 26 25 29 29 C 1.53870 * 110.03404 * 175.69080 * 25 24 23 30 30 H 1.09006 * 109.46915 * 185.67499 * 1 2 3 31 31 H 1.09000 * 109.46843 * 305.67146 * 1 2 3 32 32 H 1.08992 * 109.47675 * 65.67135 * 1 2 3 33 33 H 0.96996 * 120.00141 * 94.99981 * 4 2 1 34 34 H 0.97005 * 119.99634 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.49769 * 305.52444 * 15 13 2 36 36 H 1.09001 * 109.49425 * 65.62874 * 15 13 2 37 37 H 1.08990 * 109.34713 * 301.12557 * 16 15 13 38 38 H 1.09001 * 109.44628 * 181.24334 * 16 15 13 39 39 H 1.08993 * 109.49950 * 178.74410 * 17 16 15 40 40 H 1.09003 * 109.50122 * 58.64869 * 17 16 15 41 41 H 1.08997 * 109.58205 * 294.84748 * 18 17 16 42 42 H 1.09004 * 109.58512 * 174.42482 * 18 17 16 43 43 H 1.09001 * 109.46592 * 300.00008 * 22 20 19 44 44 H 1.08999 * 109.46762 * 59.99416 * 22 20 19 45 45 H 1.09000 * 109.47186 * 300.00165 * 24 23 22 46 46 H 1.09003 * 109.46853 * 59.99822 * 24 23 22 47 47 H 1.09008 * 110.01417 * 54.30181 * 25 24 23 48 48 H 1.08993 * 110.48609 * 335.77681 * 26 25 24 49 49 H 1.08993 * 110.48906 * 98.42478 * 26 25 24 50 50 H 1.09001 * 110.71776 * 279.57543 * 27 26 25 51 51 H 1.08993 * 110.92424 * 156.29613 * 27 26 25 52 52 H 1.08993 * 110.48909 * 203.40912 * 28 27 26 53 53 H 1.09000 * 110.59695 * 80.81613 * 28 27 26 54 54 H 1.09005 * 110.03277 * 238.57336 * 29 25 24 55 55 H 1.09000 * 110.03418 * 359.95424 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1492 -0.0077 2.3756 6 1 1.8920 1.0401 2.4243 7 6 2.6125 -0.6620 3.5089 8 7 2.7387 -0.0054 4.6425 9 14 3.0580 -2.4742 3.4245 10 1 4.4907 -2.6153 3.0605 11 1 2.8189 -3.1048 4.7476 12 1 2.2184 -3.1431 2.3984 13 6 2.0399 -0.7212 -1.2493 14 1 1.5907 -0.2760 -2.1371 15 6 1.6668 -2.2051 -1.1740 16 6 2.3013 -2.9466 -2.3534 17 6 3.8249 -2.8240 -2.2792 18 6 4.2193 -1.3464 -2.3687 19 7 3.5024 -0.6015 -1.3248 20 6 4.1736 0.1764 -0.4525 21 8 3.5823 0.7144 0.4596 22 6 5.6587 0.3778 -0.6106 23 8 6.1361 1.2360 0.4275 24 6 7.5407 1.4924 0.3695 25 6 7.9383 2.4174 1.5215 26 6 7.3131 3.8131 1.3185 27 6 8.4023 4.7933 1.8226 28 6 9.7140 4.1256 1.3402 29 6 9.4641 2.6159 1.5357 30 1 -0.3633 -1.0227 0.1016 31 1 -0.3633 0.5993 0.8349 32 1 -0.3634 0.4233 -0.9363 33 1 2.2490 -1.6319 1.1524 34 1 3.0621 -0.4628 5.4345 35 1 2.0379 -2.6265 -0.2398 36 1 0.5827 -2.3102 -1.2159 37 1 1.9469 -2.5101 -3.2871 38 1 2.0192 -3.9988 -2.3146 39 1 4.2748 -3.3714 -3.1074 40 1 4.1777 -3.2380 -1.3346 41 1 3.9478 -0.9546 -3.3489 42 1 5.2940 -1.2452 -2.2172 43 1 6.1647 -0.5856 -0.5476 44 1 5.8625 0.8325 -1.5800 45 1 8.0855 0.5521 0.4535 46 1 7.7840 1.9697 -0.5798 47 1 7.6079 1.9947 2.4705 48 1 7.1026 3.9869 0.2633 49 1 6.4041 3.9139 1.9114 50 1 8.3829 4.8653 2.9101 51 1 8.2804 5.7771 1.3696 52 1 10.5560 4.4548 1.9489 53 1 9.8940 4.3493 0.2887 54 1 9.8741 2.2903 2.4918 55 1 9.9215 2.0525 0.7224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877595.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = -63.957435 kcal Electronic energy + Delta-G solvation = -32257.898837 eV Core-core repulsion = 28295.307749 eV Total energy + Delta-G solvation = -3962.591088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.56052 -39.79094 -38.49102 -37.56276 -36.91882 -34.18140 -33.68911 -31.79919 -31.45125 -29.98160 -29.61214 -28.81016 -25.91632 -25.47387 -25.15321 -24.37730 -22.04121 -21.59259 -21.44397 -20.66047 -19.90737 -19.33513 -18.10306 -17.47172 -17.22883 -16.84212 -16.54014 -16.24581 -16.09464 -15.80917 -15.58602 -15.31346 -15.03342 -14.99489 -14.64539 -14.31516 -14.21476 -14.02757 -14.00027 -13.68548 -13.34486 -13.25317 -13.10775 -12.92741 -12.74099 -12.63737 -12.36396 -12.15216 -12.04239 -11.99528 -11.95198 -11.93054 -11.76455 -11.69120 -11.61430 -11.50997 -11.44711 -11.34955 -11.22975 -10.87798 -10.58764 -9.67933 -9.40093 -8.88676 -7.84691 -5.08426 1.24255 1.31324 1.37501 1.88127 2.00755 2.54566 2.93213 3.47141 3.60750 3.67619 3.72016 3.77607 3.87998 3.91006 3.99566 4.07288 4.13486 4.21475 4.26395 4.33759 4.35853 4.37950 4.39742 4.47736 4.53807 4.62557 4.64919 4.70344 4.73581 4.80297 4.83347 4.84180 4.90156 4.95620 4.99943 5.04477 5.05476 5.08110 5.12594 5.22580 5.23799 5.25827 5.33452 5.43355 5.44773 5.46675 5.51506 5.53239 5.89644 5.98531 6.23847 6.37586 6.68781 7.26525 7.65307 8.03993 8.23734 9.40868 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.004149 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.067571 B = 6746.948216 C = 8122.597686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.054 0.946 4 N -0.724 5.724 5 C -0.138 4.138 6 H 0.036 0.964 7 C -0.090 4.090 8 N -1.003 6.003 9 Si 0.946 3.054 10 H -0.295 1.295 11 H -0.300 1.300 12 H -0.256 1.256 13 C 0.150 3.850 14 H 0.100 0.900 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.104 3.896 19 N -0.614 5.614 20 C 0.470 3.530 21 O -0.493 6.493 22 C 0.051 3.949 23 O -0.399 6.399 24 C 0.068 3.932 25 C -0.099 4.099 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.115 4.115 29 C -0.111 4.111 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.356 0.644 34 H 0.246 0.754 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.032 0.968 50 H 0.058 0.942 51 H 0.077 0.923 52 H 0.078 0.922 53 H 0.080 0.920 54 H 0.066 0.934 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.017 -1.493 -23.218 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.072 0.928 4 N -0.368 5.368 5 C -0.271 4.271 6 H 0.054 0.946 7 C -0.278 4.278 8 N -0.659 5.659 9 Si 0.777 3.223 10 H -0.223 1.223 11 H -0.227 1.227 12 H -0.181 1.181 13 C 0.046 3.954 14 H 0.118 0.882 15 C -0.172 4.172 16 C -0.148 4.148 17 C -0.174 4.174 18 C -0.018 4.018 19 N -0.352 5.352 20 C 0.257 3.743 21 O -0.364 6.364 22 C -0.028 4.028 23 O -0.318 6.318 24 C -0.008 4.008 25 C -0.118 4.118 26 C -0.152 4.152 27 C -0.163 4.163 28 C -0.153 4.153 29 C -0.148 4.148 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.096 0.904 52 H 0.097 0.903 53 H 0.098 0.902 54 H 0.085 0.915 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.582 -0.945 -22.465 25.293 hybrid contribution 0.142 -1.104 1.176 1.620 sum 11.724 -2.049 -21.289 24.390 Atomic orbital electron populations 1.22400 0.97974 1.01083 1.00592 1.20737 0.91359 0.96775 0.85000 0.92784 1.42707 1.79031 1.08133 1.06907 1.18703 1.29194 0.92739 0.86434 0.94553 1.25246 1.05200 1.01524 0.95811 1.69897 1.58161 1.36782 1.01049 0.85496 0.77700 0.82689 0.76419 1.22291 1.22712 1.18123 1.21546 0.79691 0.96187 0.97929 0.88229 1.22012 1.01673 0.94631 0.98867 1.21498 0.94990 1.00538 0.97802 1.21951 0.96735 0.96117 1.02556 1.22008 0.97214 0.91425 0.91111 1.48014 1.06822 1.47370 1.32965 1.20917 0.89954 0.81201 0.82270 1.91089 1.68043 1.47334 1.29977 1.22344 0.92051 0.95765 0.92649 1.88106 1.24651 1.67998 1.51067 1.22855 0.80374 0.98582 0.99006 1.21807 0.97009 0.95536 0.97414 1.22321 0.97595 0.94315 1.01002 1.22545 0.94815 0.98491 1.00481 1.22340 0.97013 0.93767 1.02164 1.22112 0.92106 0.97839 1.02784 0.92882 0.95729 0.90636 0.80950 0.94544 0.94877 0.89837 0.89441 0.91061 0.87639 0.94041 0.88586 0.88879 0.89859 0.87637 0.92476 0.90750 0.93809 0.91161 0.94949 0.92368 0.90415 0.90302 0.90164 0.91523 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.14 71.98 0.66 -5.19 16 2 C 0.17 7.00 1.88 44.99 0.08 7.09 16 3 H 0.05 2.65 5.92 -6.12 -0.04 2.62 16 4 N -0.72 -37.16 3.42 -322.94 -1.10 -38.26 16 5 C -0.14 -8.86 8.46 84.03 0.71 -8.15 16 6 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 7 C -0.09 -6.00 5.50 84.87 0.47 -5.53 16 8 N -1.00 -72.25 13.97 21.65 0.30 -71.94 16 9 Si 0.95 51.81 27.74 68.60 1.90 53.71 16 10 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 11 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 12 H -0.26 -12.61 6.52 99.48 0.65 -11.96 16 13 C 0.15 4.43 2.71 44.98 0.12 4.56 16 14 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.13 -3.51 4.88 30.69 0.15 -3.36 16 16 C -0.11 -1.92 5.88 30.63 0.18 -1.74 16 17 C -0.14 -2.22 6.08 30.67 0.19 -2.03 16 18 C 0.10 1.77 6.33 86.36 0.55 2.31 16 19 N -0.61 -17.55 2.97 -795.02 -2.36 -19.91 16 20 C 0.47 17.70 7.46 87.66 0.65 18.35 16 21 O -0.49 -25.23 9.23 16.00 0.15 -25.08 16 22 C 0.05 1.51 4.82 71.24 0.34 1.85 16 23 O -0.40 -14.94 9.71 -129.94 -1.26 -16.21 16 24 C 0.07 1.81 4.98 71.98 0.36 2.16 16 25 C -0.10 -2.79 3.19 -10.07 -0.03 -2.83 16 26 C -0.11 -3.29 6.22 31.70 0.20 -3.09 16 27 C -0.13 -2.75 6.91 31.91 0.22 -2.53 16 28 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 29 C -0.11 -2.18 6.46 31.32 0.20 -1.98 16 30 H 0.05 1.82 7.03 -2.38 -0.02 1.81 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.36 17.81 3.48 -92.71 -0.32 17.49 16 34 H 0.25 16.98 8.31 -92.70 -0.77 16.21 16 35 H 0.03 1.12 6.04 -2.39 -0.01 1.11 16 36 H 0.08 2.03 7.04 -2.39 -0.02 2.01 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.29 5.96 -2.38 -0.01 1.27 16 43 H 0.08 2.08 7.48 -2.39 -0.02 2.06 16 44 H 0.11 2.17 8.11 -2.39 -0.02 2.15 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 47 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.07 1.87 7.77 -2.39 -0.02 1.85 16 49 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 55 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 Total: -1.00 -91.05 406.66 3.33 -87.72 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.44 Total: 31.81 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.27 Total: -1.83 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -3.16 Total: -130.12 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.11 Total: -41.29 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.90 Total: 53.71 kcal Total: -91.05 3.33 -87.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877595.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.761 kcal (2) G-P(sol) polarization free energy of solvation -91.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds