Wall clock time and date at job start Tue Mar 31 2020 23:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46726 * 2 1 4 4 O 1.42891 * 109.47428 * 239.99459 * 2 1 3 5 5 C 1.42907 * 113.99983 * 147.96725 * 4 2 1 6 6 C 1.52998 * 109.46950 * 275.36520 * 5 4 2 7 7 C 1.53001 * 109.46988 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47289 * 60.00088 * 7 6 5 9 9 C 1.53003 * 109.47165 * 300.00203 * 8 7 6 10 10 C 1.53001 * 109.47183 * 59.99732 * 9 8 7 11 11 C 1.50701 * 109.46653 * 119.99025 * 2 1 3 12 12 O 1.21286 * 119.99718 * 115.00698 * 11 2 1 13 13 N 1.34773 * 120.00688 * 295.00242 * 11 2 1 14 14 C 1.46498 * 120.00258 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.46968 * 179.97438 * 14 13 11 16 16 C 1.53346 * 109.42154 * 295.13057 * 15 14 13 17 17 C 1.53191 * 109.15000 * 178.67684 * 16 15 14 18 18 N 1.46923 * 108.89405 * 54.57272 * 17 16 15 19 19 C 1.36940 * 120.62931 * 126.29946 * 18 17 16 20 20 H 1.08001 * 119.99776 * 324.86707 * 19 18 17 21 21 C 1.38809 * 120.00046 * 144.86937 * 19 18 17 22 22 N 1.31621 * 119.99985 * 345.41083 * 21 19 18 23 23 Si 1.86798 * 120.00085 * 165.41160 * 21 19 18 24 24 H 1.48500 * 109.47195 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47069 * 119.99690 * 23 21 19 26 26 H 1.48499 * 109.47329 * 239.99593 * 23 21 19 27 27 C 1.46924 * 118.74089 * 306.32446 * 18 17 16 28 28 C 1.53042 * 109.45658 * 174.99942 * 15 14 13 29 29 H 1.09001 * 109.47166 * 184.83746 * 1 2 3 30 30 H 1.08994 * 109.47733 * 304.84653 * 1 2 3 31 31 H 1.09008 * 109.46692 * 64.84763 * 1 2 3 32 32 H 1.08995 * 109.47201 * 35.36335 * 5 4 2 33 33 H 1.09005 * 109.47498 * 300.00208 * 6 5 4 34 34 H 1.09000 * 109.47185 * 60.00062 * 6 5 4 35 35 H 1.08995 * 109.47234 * 299.99858 * 7 6 5 36 36 H 1.09008 * 109.47269 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47366 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.46700 * 60.00032 * 8 7 6 39 39 H 1.08995 * 109.46691 * 299.99821 * 9 8 7 40 40 H 1.09000 * 109.47317 * 179.97438 * 9 8 7 41 41 H 1.08995 * 109.46936 * 180.02562 * 10 9 8 42 42 H 1.09005 * 109.47223 * 59.99840 * 10 9 8 43 43 H 0.97006 * 119.99640 * 0.02562 * 13 11 2 44 44 H 1.09005 * 109.47058 * 60.00480 * 14 13 11 45 45 H 1.09000 * 109.47231 * 299.99930 * 14 13 11 46 46 H 1.09005 * 109.45834 * 55.03339 * 15 14 13 47 47 H 1.09001 * 109.68684 * 58.70670 * 16 15 14 48 48 H 1.09006 * 109.47320 * 298.50954 * 16 15 14 49 49 H 1.09004 * 109.58225 * 294.71564 * 17 16 15 50 50 H 1.08997 * 109.58947 * 174.43629 * 17 16 15 51 51 H 0.96997 * 119.99813 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.58467 * 173.39361 * 27 18 17 53 53 H 1.09000 * 109.58310 * 293.67535 * 27 18 17 54 54 H 1.08993 * 109.49999 * 61.43769 * 28 15 14 55 55 H 1.09003 * 109.49939 * 301.33648 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 3.2436 -0.1636 -1.6679 6 6 2.9697 1.0369 -2.5761 7 6 4.2943 1.5834 -3.1123 8 6 5.0102 0.4924 -3.9112 9 6 5.2841 -0.7081 -3.0030 10 6 3.9595 -1.2546 -2.4668 11 6 2.0322 -0.7102 1.2306 12 8 2.6530 -1.7465 1.1218 13 7 1.7918 -0.1939 2.4521 14 6 2.2805 -0.8841 3.6483 15 6 1.8761 -0.0935 4.8943 16 6 2.5854 1.2660 4.8879 17 6 2.1507 2.0653 6.1204 18 7 2.3997 1.2585 7.3228 19 6 3.1404 1.7611 8.3592 20 1 3.9746 2.4171 8.1584 21 6 2.8190 1.4275 9.6677 22 7 1.6553 0.8759 9.9393 23 14 4.0381 1.7614 11.0430 24 1 5.2633 2.3824 10.4786 25 1 3.4265 2.6835 12.0336 26 1 4.3939 0.4834 11.7104 27 6 1.8395 -0.0979 7.3919 28 6 2.2769 -0.8761 6.1469 29 1 -0.3633 -1.0240 0.0867 30 1 -0.3634 0.5871 0.8433 31 1 -0.3633 0.4368 -0.9303 32 1 3.8728 0.1478 -0.8341 33 1 2.3404 0.7256 -3.4100 34 1 2.4601 1.8143 -2.0069 35 1 4.9231 1.8949 -2.2783 36 1 4.0993 2.4390 -3.7591 37 1 5.9537 0.8819 -4.2935 38 1 4.3813 0.1811 -4.7453 39 1 5.9129 -0.3966 -2.1689 40 1 5.7937 -1.4855 -3.5722 41 1 4.1546 -2.1096 -1.8195 42 1 3.3306 -1.5660 -3.3009 43 1 1.2950 0.6347 2.5392 44 1 3.3669 -0.9619 3.6046 45 1 1.8463 -1.8828 3.6945 46 1 0.7970 0.0606 4.8922 47 1 2.3182 1.8154 3.9852 48 1 3.6643 1.1132 4.9154 49 1 1.0880 2.2971 6.0494 50 1 2.7236 2.9910 6.1763 51 1 1.4306 0.6431 10.8538 52 1 2.2090 -0.6008 8.2856 53 1 0.7515 -0.0425 7.4272 54 1 3.3586 -1.0089 6.1623 55 1 1.7902 -1.8514 6.1379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319071788.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:21 Heat of formation + Delta-G solvation = -118.890202 kcal Electronic energy + Delta-G solvation = -30290.042764 eV Core-core repulsion = 26325.069612 eV Total energy + Delta-G solvation = -3964.973152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.27228 -39.95382 -39.22732 -37.39851 -36.34960 -34.58864 -33.08535 -32.20591 -31.70013 -31.41190 -30.12419 -28.43032 -26.11092 -24.84465 -23.81605 -23.56092 -23.25403 -22.58160 -21.40366 -20.76496 -20.65008 -18.76293 -18.29761 -18.18950 -17.07957 -16.82369 -16.37052 -16.24082 -15.79064 -15.47043 -15.38796 -15.32238 -15.01946 -14.95671 -14.76457 -14.42858 -14.25213 -14.06206 -13.87158 -13.67362 -13.45095 -13.22521 -13.19285 -13.14298 -12.99791 -12.79414 -12.63320 -12.43487 -12.29658 -12.11526 -12.03827 -11.99899 -11.86992 -11.76977 -11.62596 -11.46176 -11.28271 -11.23284 -11.10414 -10.91667 -10.57613 -10.21262 -10.10023 -8.57960 -7.88512 -5.41325 1.43964 1.46367 1.56523 1.56618 2.04833 2.49465 2.65483 3.26282 3.66690 3.71892 3.73360 3.79734 3.84467 3.93540 3.96507 4.01406 4.06912 4.08943 4.25169 4.28468 4.34634 4.50602 4.53854 4.54720 4.55476 4.67223 4.68796 4.72156 4.72984 4.78524 4.85975 4.92516 4.94115 5.03209 5.04051 5.11754 5.13522 5.19562 5.21152 5.24104 5.28357 5.28868 5.30873 5.37092 5.38272 5.44545 5.49467 5.51133 5.66271 5.75636 6.12098 6.42743 6.56871 7.16468 7.22611 7.86210 8.40915 9.16826 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.001998 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.358942 B =14011.825572 C =14504.872799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.112 0.888 4 O -0.371 6.371 5 C 0.087 3.913 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.115 4.115 10 C -0.113 4.113 11 C 0.483 3.517 12 O -0.579 6.579 13 N -0.710 5.710 14 C 0.136 3.864 15 C -0.076 4.076 16 C -0.114 4.114 17 C 0.140 3.860 18 N -0.611 5.611 19 C -0.266 4.266 20 H 0.060 0.940 21 C -0.045 4.045 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.183 3.817 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.415 0.585 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.018 0.982 50 H 0.050 0.950 51 H 0.250 0.750 52 H 0.038 0.962 53 H 0.002 0.998 54 H 0.049 0.951 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 1.752 -28.735 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.130 0.870 4 O -0.289 6.289 5 C 0.029 3.971 6 C -0.174 4.174 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.151 4.151 11 C 0.270 3.730 12 O -0.458 6.458 13 N -0.364 5.364 14 C 0.012 3.988 15 C -0.095 4.095 16 C -0.152 4.152 17 C 0.015 3.985 18 N -0.335 5.335 19 C -0.396 4.396 20 H 0.077 0.923 21 C -0.241 4.241 22 N -0.577 5.577 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.057 3.943 28 C -0.163 4.163 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.252 0.748 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.056 0.944 53 H 0.020 0.980 54 H 0.068 0.932 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.687 0.831 -28.766 28.786 hybrid contribution 0.418 0.233 1.745 1.809 sum 1.105 1.064 -27.021 27.064 Atomic orbital electron populations 1.21875 0.89359 1.03408 1.05284 1.22210 0.97754 0.96183 0.82651 0.87026 1.88007 1.39200 1.60357 1.41346 1.22286 0.84546 0.94716 0.95504 1.22055 0.98767 0.96770 0.99820 1.21517 0.95471 0.98450 1.00063 1.21576 1.01091 0.95022 0.98042 1.21510 0.95602 0.98619 0.99538 1.21524 0.96973 0.97188 0.99388 1.22060 0.79215 0.85547 0.86182 1.90688 1.42184 1.25585 1.87316 1.45986 1.57285 1.28145 1.05021 1.21246 0.98606 0.95540 0.83385 1.21186 1.00661 0.95191 0.92485 1.21986 0.99585 0.95506 0.98167 1.21077 0.97184 0.93662 0.86597 1.44245 1.61322 1.11605 1.16321 1.19428 1.06951 1.27466 0.85798 0.92259 1.25966 0.97335 1.00976 0.99856 1.70160 1.21269 1.47363 1.18879 0.85271 0.79108 0.77136 0.79307 1.19097 1.21667 1.21722 1.20461 0.94117 0.84885 0.94852 1.21979 1.00571 0.98414 0.95286 0.92854 0.88261 0.89072 0.93634 0.90856 0.90835 0.92141 0.90164 0.90737 0.91359 0.92402 0.90650 0.93416 0.91043 0.74757 0.92941 0.92316 0.90225 0.89459 0.93317 0.96355 0.93126 0.94080 0.94367 0.98028 0.93208 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.52 71.98 0.68 -1.14 16 2 C 0.07 1.31 2.89 29.85 0.09 1.40 16 3 H 0.11 1.38 7.21 -2.38 -0.02 1.36 16 4 O -0.37 -8.31 9.19 -129.99 -1.19 -9.51 16 5 C 0.09 1.64 2.42 30.59 0.07 1.71 16 6 C -0.14 -1.77 5.44 30.59 0.17 -1.60 16 7 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 8 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 9 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 10 C -0.11 -2.12 5.57 30.60 0.17 -1.95 16 11 C 0.48 12.08 7.16 87.66 0.63 12.71 16 12 O -0.58 -20.33 16.51 15.94 0.26 -20.07 16 13 N -0.71 -15.08 5.23 -463.05 -2.42 -17.51 16 14 C 0.14 3.59 5.07 86.38 0.44 4.03 16 15 C -0.08 -2.19 2.19 -10.66 -0.02 -2.22 16 16 C -0.11 -3.35 5.27 30.77 0.16 -3.19 16 17 C 0.14 5.45 6.50 86.36 0.56 6.02 16 18 N -0.61 -30.15 2.95 -699.11 -2.06 -32.21 16 19 C -0.27 -14.60 9.51 84.03 0.80 -13.80 16 20 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 21 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 22 N -0.93 -55.18 11.59 21.65 0.25 -54.93 16 23 Si 0.96 44.88 29.58 68.60 2.03 46.91 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 C 0.18 8.62 5.26 86.36 0.45 9.07 16 28 C -0.12 -4.42 5.36 30.67 0.16 -4.25 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.82 8.04 -2.39 -0.02 0.80 16 31 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 0.96 7.90 -2.39 -0.02 0.94 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.80 7.57 -2.39 -0.02 0.78 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.41 6.21 7.55 -92.70 -0.70 5.51 16 44 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.09 1.90 7.16 -2.39 -0.02 1.88 16 48 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 52 H 0.04 2.06 6.54 -2.39 -0.02 2.05 16 53 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 54 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 55 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -72.15 422.02 2.32 -69.83 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.13 Total: 16.48 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.33 Total: 1.01 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -4.24 Total: -104.65 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.93 Total: -29.58 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.15 2.32 -69.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319071788.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.062 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds