Wall clock time and date at job start Wed Apr 1 2020 00:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47081 * 2 1 4 4 C 1.36932 * 120.00076 * 95.56010 * 3 2 1 5 5 H 1.08007 * 120.00206 * 161.84382 * 4 3 2 6 6 C 1.38809 * 120.00262 * 341.84002 * 4 3 2 7 7 N 1.31623 * 120.00011 * 314.45357 * 6 4 3 8 8 Si 1.86805 * 120.00113 * 134.44684 * 6 4 3 9 9 H 1.48494 * 109.46805 * 94.99534 * 8 6 4 10 10 H 1.48500 * 109.46969 * 214.99561 * 8 6 4 11 11 H 1.48505 * 109.46977 * 334.99448 * 8 6 4 12 12 C 1.46500 * 119.99847 * 275.55771 * 3 2 1 13 13 C 1.52995 * 109.47085 * 263.64576 * 12 3 2 14 14 C 1.53045 * 109.46051 * 177.60975 * 13 12 3 15 15 C 1.53194 * 109.31196 * 178.63014 * 14 13 12 16 16 N 1.46917 * 108.77831 * 54.63447 * 15 14 13 17 17 C 1.34780 * 120.63607 * 126.36841 * 16 15 14 18 18 O 1.21289 * 119.99588 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00442 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47438 * 176.99364 * 19 17 16 21 21 C 1.52997 * 115.54836 * 279.97403 * 20 19 17 22 22 O 1.42898 * 109.47316 * 295.89767 * 21 20 19 23 23 C 1.42895 * 114.00650 * 179.97438 * 22 21 20 24 24 C 1.52999 * 117.50301 * 134.26126 * 20 19 17 25 25 C 1.52999 * 117.50152 * 65.63661 * 20 19 17 26 26 C 1.46927 * 118.73813 * 306.64011 * 16 15 14 27 27 C 1.52769 * 109.00612 * 53.31366 * 26 16 15 28 28 H 1.09003 * 109.47129 * 187.66853 * 1 2 3 29 29 H 1.09003 * 109.47132 * 307.67045 * 1 2 3 30 30 H 1.09005 * 109.47146 * 67.66596 * 1 2 3 31 31 H 1.08996 * 109.47230 * 239.99722 * 2 1 3 32 32 H 1.09000 * 109.47133 * 119.99372 * 2 1 3 33 33 H 0.96997 * 119.99738 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47227 * 143.64543 * 12 3 2 35 35 H 1.09004 * 109.47235 * 23.64295 * 12 3 2 36 36 H 1.09002 * 109.46450 * 297.57941 * 13 12 3 37 37 H 1.08997 * 109.49625 * 58.67293 * 14 13 12 38 38 H 1.09005 * 109.49359 * 298.57441 * 14 13 12 39 39 H 1.09002 * 109.58505 * 294.83956 * 15 14 13 40 40 H 1.09003 * 109.69804 * 174.49204 * 15 14 13 41 41 H 1.09008 * 109.47138 * 296.99131 * 19 17 16 42 42 H 1.08999 * 109.47750 * 56.99167 * 19 17 16 43 43 H 1.09000 * 109.47458 * 55.89788 * 21 20 19 44 44 H 1.09007 * 109.47269 * 175.90015 * 21 20 19 45 45 H 1.09000 * 109.46896 * 60.00118 * 23 22 21 46 46 H 1.09002 * 109.47561 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47341 * 300.00246 * 23 22 21 48 48 H 1.08994 * 117.49996 * 359.97438 * 24 20 19 49 49 H 1.08998 * 117.49939 * 145.02034 * 24 20 19 50 50 H 1.08997 * 117.50330 * 214.98550 * 25 20 19 51 51 H 1.09003 * 117.49853 * 359.97438 * 25 20 19 52 52 H 1.09002 * 109.58604 * 173.14475 * 26 16 15 53 53 H 1.08993 * 109.59134 * 293.57060 * 26 16 15 54 54 H 1.09000 * 109.56089 * 185.55129 * 27 26 16 55 55 H 1.08993 * 109.36137 * 65.50135 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3549 1.9885 1.1803 5 1 2.9771 2.8713 1.1752 6 6 1.8963 1.4695 2.3833 7 7 0.6362 1.1100 2.5073 8 14 3.0677 1.2811 3.8262 9 1 2.9630 2.4718 4.7073 10 1 2.7120 0.0624 4.5966 11 1 4.4591 1.1594 3.3217 12 6 2.1466 2.1128 -1.2628 13 6 3.5899 2.0196 -1.7618 14 6 3.7102 2.7331 -3.1104 15 6 5.1635 2.6674 -3.5904 16 7 5.5917 1.2621 -3.6110 17 6 6.1177 0.7207 -4.7275 18 8 6.2418 1.3950 -5.7280 19 6 6.5517 -0.7224 -4.7329 20 6 7.0391 -1.1032 -6.1323 21 6 5.9414 -1.4239 -7.1487 22 8 5.2254 -2.5861 -6.7259 23 6 4.1717 -2.9733 -7.6100 24 6 8.3488 -1.8875 -6.2352 25 6 8.3035 -0.4159 -6.6514 26 6 5.4300 0.4565 -2.3929 27 6 3.9788 0.5484 -1.9246 28 1 -0.3633 -1.0185 0.1371 29 1 -0.3633 0.6280 0.8135 30 1 -0.3634 0.3905 -0.9506 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 0.3160 0.7470 3.3478 34 1 1.8835 3.1587 -1.1051 35 1 1.4769 1.6775 -2.0046 36 1 4.2551 2.4933 -1.0398 37 1 3.4107 3.7751 -2.9986 38 1 3.0638 2.2443 -3.8394 39 1 5.7992 3.2333 -2.9094 40 1 5.2384 3.0869 -4.5937 41 1 7.3611 -0.8611 -4.0160 42 1 5.7092 -1.3563 -4.4566 43 1 5.2549 -0.5803 -7.2204 44 1 6.3920 -1.6095 -8.1238 45 1 4.5852 -3.1909 -8.5948 46 1 3.6773 -3.8624 -7.2187 47 1 3.4485 -2.1618 -7.6909 48 1 8.8635 -2.1317 -5.3060 49 1 8.4286 -2.6322 -7.0270 50 1 8.3536 -0.1924 -7.7171 51 1 8.7880 0.3081 -5.9961 52 1 5.6783 -0.5831 -2.6068 53 1 6.0879 0.8382 -1.6123 54 1 3.8705 0.0355 -0.9690 55 1 3.3299 0.0803 -2.6648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328574106.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:03 Heat of formation + Delta-G solvation = -50.119503 kcal Electronic energy + Delta-G solvation = -31179.446391 eV Core-core repulsion = 27217.455361 eV Total energy + Delta-G solvation = -3961.991030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.39309 -39.77058 -38.80082 -37.60145 -37.16549 -34.58462 -33.09821 -32.16642 -31.11118 -30.32224 -28.93761 -27.96511 -26.40573 -25.55764 -24.46621 -23.86232 -23.25998 -22.15392 -21.51992 -20.49297 -19.50268 -18.47366 -17.97048 -17.39717 -17.00035 -16.86785 -16.79281 -16.46211 -16.03244 -15.73831 -15.70021 -15.26573 -15.21138 -14.87249 -14.77592 -14.39494 -14.17689 -14.08068 -13.83428 -13.59287 -13.38619 -13.27316 -13.06934 -12.89458 -12.62982 -12.52964 -12.51040 -12.46011 -12.32062 -12.17015 -12.07289 -11.97866 -11.82889 -11.72916 -11.41299 -11.31624 -11.18365 -11.02807 -11.00333 -10.66157 -10.42552 -10.19232 -9.59481 -8.81157 -7.88638 -5.01968 1.45716 1.55237 1.63400 1.68174 2.03568 2.58567 2.59475 3.10837 3.11870 3.63692 3.67550 3.69469 3.80414 3.90764 4.00201 4.07140 4.14050 4.21639 4.24260 4.38328 4.41529 4.47992 4.52358 4.55104 4.58112 4.60355 4.64756 4.73197 4.78479 4.82051 4.85229 4.85883 4.89437 4.91958 4.95384 5.04168 5.06974 5.08812 5.10892 5.15844 5.17908 5.22409 5.27343 5.31891 5.42504 5.50643 5.64672 5.69828 5.76308 6.19252 6.20712 6.37932 6.48366 7.22473 7.22928 7.97106 8.45005 9.08453 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002693 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.783920 B =10392.988840 C =10843.794887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.175 3.825 3 N -0.598 5.598 4 C -0.277 4.277 5 H 0.061 0.939 6 C -0.018 4.018 7 N -0.881 5.881 8 Si 0.911 3.089 9 H -0.294 1.294 10 H -0.295 1.295 11 H -0.275 1.275 12 C 0.156 3.844 13 C -0.093 4.093 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.610 5.610 17 C 0.513 3.487 18 O -0.573 6.573 19 C -0.097 4.097 20 C -0.126 4.126 21 C 0.104 3.896 22 O -0.404 6.404 23 C 0.026 3.974 24 C -0.150 4.150 25 C -0.149 4.149 26 C 0.111 3.889 27 C -0.114 4.114 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.249 0.751 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.098 0.902 47 H 0.038 0.962 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.103 0.897 53 H 0.073 0.927 54 H 0.071 0.929 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 -6.951 -18.824 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.049 3.951 3 N -0.319 5.319 4 C -0.406 4.406 5 H 0.079 0.921 6 C -0.218 4.218 7 N -0.523 5.523 8 Si 0.739 3.261 9 H -0.222 1.222 10 H -0.222 1.222 11 H -0.200 1.200 12 C 0.030 3.970 13 C -0.114 4.114 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.343 5.343 17 C 0.303 3.697 18 O -0.453 6.453 19 C -0.136 4.136 20 C -0.127 4.127 21 C 0.027 3.973 22 O -0.324 6.324 23 C -0.070 4.070 24 C -0.187 4.187 25 C -0.186 4.186 26 C -0.011 4.011 27 C -0.152 4.152 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.057 0.943 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.114 0.886 51 H 0.108 0.892 52 H 0.121 0.879 53 H 0.091 0.909 54 H 0.090 0.910 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.617 -6.751 -19.058 23.833 hybrid contribution -0.267 0.287 1.002 1.076 sum 12.350 -6.464 -18.057 22.811 Atomic orbital electron populations 1.22472 0.99548 1.00233 1.01247 1.20476 0.92518 0.84782 0.97335 1.44275 1.76012 1.09741 1.01899 1.19040 1.24649 1.12672 0.84209 0.92074 1.25029 0.95425 1.02808 0.98502 1.70367 1.12486 1.43995 1.25445 0.86137 0.82057 0.76816 0.81042 1.22184 1.22175 1.20049 1.20828 0.94341 0.94808 0.87048 1.21529 0.98552 0.95791 0.95530 1.21816 0.95912 1.01341 0.96419 1.21523 0.95082 0.81889 1.02130 1.48268 1.61345 1.12196 1.12456 1.21077 0.76497 0.90270 0.81903 1.90636 1.56838 1.64120 1.33734 1.21194 1.03739 0.91666 0.97028 1.20961 0.89640 1.06882 0.95182 1.21883 0.92621 0.86944 0.95809 1.87832 1.48507 1.45966 1.50081 1.22892 0.89379 1.00640 0.94112 1.23187 0.97163 0.94230 1.04143 1.22859 0.98342 0.95608 1.01815 1.21792 0.97032 0.96428 0.85870 1.21711 0.95502 0.96878 1.01119 0.94735 0.89987 0.95587 0.93718 0.95629 0.94095 0.95281 0.94114 0.92567 0.90272 0.92424 0.91093 0.90099 0.86845 0.87781 0.94429 0.92239 0.92919 0.88375 0.94313 0.87309 0.87774 0.88564 0.89152 0.87909 0.90872 0.91022 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.79 9.89 71.98 0.71 -7.07 16 2 C 0.17 7.67 4.70 86.38 0.41 8.07 16 3 N -0.60 -27.35 2.05 -702.02 -1.44 -28.79 16 4 C -0.28 -14.39 9.45 84.03 0.79 -13.59 16 5 H 0.06 3.22 8.06 -2.91 -0.02 3.19 16 6 C -0.02 -0.97 4.12 84.86 0.35 -0.62 16 7 N -0.88 -48.91 10.22 21.65 0.22 -48.69 16 8 Si 0.91 42.53 29.69 68.60 2.04 44.56 16 9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.16 5.94 5.22 86.38 0.45 6.39 16 13 C -0.09 -2.89 2.37 -10.77 -0.03 -2.92 16 14 C -0.12 -3.03 5.36 30.67 0.16 -2.87 16 15 C 0.12 2.89 6.43 86.37 0.56 3.45 16 16 N -0.61 -14.87 2.98 -819.73 -2.44 -17.32 16 17 C 0.51 12.93 7.60 87.65 0.67 13.59 16 18 O -0.57 -17.70 14.50 -3.06 -0.04 -17.74 16 19 C -0.10 -1.89 3.99 29.84 0.12 -1.77 16 20 C -0.13 -2.43 1.29 -52.18 -0.07 -2.50 16 21 C 0.10 2.12 5.74 71.98 0.41 2.54 16 22 O -0.40 -8.53 10.40 -148.98 -1.55 -10.08 16 23 C 0.03 0.40 11.01 113.37 1.25 1.65 16 24 C -0.15 -2.21 9.90 30.59 0.30 -1.90 16 25 C -0.15 -2.65 8.97 30.59 0.27 -2.37 16 26 C 0.11 2.51 6.32 86.22 0.54 3.05 16 27 C -0.11 -3.22 4.22 30.53 0.13 -3.09 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 4.28 5.42 -2.39 -0.01 4.27 16 30 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 32 H 0.03 1.23 7.11 -2.39 -0.02 1.22 16 33 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.03 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.04 1.49 8.02 -2.38 -0.02 1.48 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.13 7.00 -2.39 -0.02 2.12 16 41 H 0.11 1.74 7.87 -2.38 -0.02 1.72 16 42 H 0.10 2.05 7.25 -2.39 -0.02 2.04 16 43 H 0.04 0.91 7.91 -2.39 -0.02 0.89 16 44 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 48 H 0.11 1.32 8.08 -2.39 -0.02 1.30 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.10 1.86 5.91 -2.39 -0.01 1.85 16 53 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.07 2.34 6.29 -2.39 -0.02 2.33 16 55 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -62.18 421.78 4.65 -57.53 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.83 Total: 20.48 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 7.04 Total: 0.04 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.66 Total: -94.79 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.59 Total: -27.82 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.04 Total: 44.56 kcal Total: -62.18 4.65 -57.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328574106.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.414 kcal (2) G-P(sol) polarization free energy of solvation -62.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds