Wall clock time and date at job start Wed Apr 1 2020 00:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46491 * 109.47106 * 2 1 4 4 C 1.36936 * 120.00167 * 275.24043 * 3 2 1 5 5 H 1.07996 * 120.00330 * 37.69116 * 4 3 2 6 6 C 1.38814 * 120.00132 * 217.69612 * 4 3 2 7 7 N 1.31616 * 120.00184 * 21.67716 * 6 4 3 8 8 Si 1.86803 * 120.00171 * 201.68014 * 6 4 3 9 9 H 1.48502 * 109.46863 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47253 * 119.99962 * 8 6 4 11 11 H 1.48497 * 109.46917 * 240.00223 * 8 6 4 12 12 C 1.46505 * 120.00188 * 95.24261 * 3 2 1 13 13 C 1.53010 * 109.46650 * 269.99948 * 12 3 2 14 14 C 1.53041 * 109.45600 * 174.99755 * 13 12 3 15 15 C 1.53194 * 109.30982 * 181.38309 * 14 13 12 16 16 N 1.46929 * 108.77613 * 305.36477 * 15 14 13 17 17 C 1.34778 * 120.62996 * 233.58536 * 16 15 14 18 18 O 1.21278 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99737 * 180.02562 * 17 16 15 20 20 C 1.52993 * 109.46778 * 179.97438 * 19 17 16 21 21 H 1.09002 * 109.52456 * 304.99726 * 20 19 17 22 22 C 1.53180 * 109.57368 * 184.84050 * 20 19 17 23 23 C 1.53170 * 109.03763 * 183.08250 * 22 20 19 24 24 C 1.53097 * 109.16332 * 56.98229 * 23 22 20 25 25 O 1.42900 * 109.41355 * 302.38740 * 24 23 22 26 26 C 1.42901 * 114.09470 * 61.15927 * 25 24 23 27 27 C 1.46925 * 118.73756 * 53.86398 * 16 15 14 28 28 C 1.53034 * 109.45868 * 295.06519 * 13 12 3 29 29 H 1.09000 * 109.46754 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47213 * 299.99714 * 1 2 3 31 31 H 1.08994 * 109.47330 * 60.00019 * 1 2 3 32 32 H 1.08995 * 109.47021 * 239.99901 * 2 1 3 33 33 H 1.09000 * 109.46911 * 119.99948 * 2 1 3 34 34 H 0.96996 * 120.00410 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47601 * 150.00363 * 12 3 2 36 36 H 1.08995 * 109.47274 * 29.99405 * 12 3 2 37 37 H 1.08998 * 109.45855 * 55.02484 * 13 12 3 38 38 H 1.09007 * 109.49647 * 61.43420 * 14 13 12 39 39 H 1.08996 * 109.52560 * 301.35067 * 14 13 12 40 40 H 1.09005 * 109.58458 * 185.57962 * 15 14 13 41 41 H 1.09001 * 109.70064 * 65.22745 * 15 14 13 42 42 H 1.08994 * 109.47048 * 59.99826 * 19 17 16 43 43 H 1.08995 * 109.46893 * 299.99879 * 19 17 16 44 44 H 1.09000 * 109.54209 * 302.95154 * 22 20 19 45 45 H 1.09001 * 109.54318 * 63.21598 * 22 20 19 46 46 H 1.09000 * 109.52617 * 297.07523 * 23 22 20 47 47 H 1.09004 * 109.57631 * 176.91335 * 23 22 20 48 48 H 1.09009 * 109.48003 * 182.40851 * 24 23 22 49 49 H 1.08998 * 109.49010 * 62.38280 * 24 23 22 50 50 H 1.09005 * 109.48263 * 178.85756 * 26 25 24 51 51 H 1.08999 * 109.49172 * 58.83187 * 26 25 24 52 52 H 1.09005 * 109.58906 * 65.92018 * 27 16 15 53 53 H 1.08995 * 109.58851 * 186.35079 * 27 16 15 54 54 H 1.09005 * 109.50058 * 298.56534 * 28 13 12 55 55 H 1.09003 * 109.50231 * 58.63329 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1444 2.0628 -1.1809 5 1 1.4118 1.9284 -1.9629 6 6 3.2140 2.9265 -1.3730 7 7 4.3071 2.7908 -0.6525 8 14 3.1021 4.2815 -2.6540 9 1 1.7785 4.2206 -3.3245 10 1 3.2626 5.6017 -1.9934 11 1 4.1763 4.0988 -3.6629 12 6 2.3718 2.0332 1.2634 13 6 1.1404 2.7390 1.8350 14 6 1.4760 3.3137 3.2131 15 6 0.2313 3.9894 3.7971 16 7 -0.2638 4.9820 2.8336 17 6 -0.4682 6.2604 3.2085 18 8 -0.2426 6.6009 4.3504 19 6 -0.9769 7.2667 2.2086 20 6 -1.1211 8.6307 2.8863 21 1 -1.7561 8.5347 3.7670 22 6 -1.7512 9.6261 1.9072 23 6 -1.8189 11.0049 2.5709 24 6 -0.4111 11.4253 3.0012 25 8 0.1286 10.4415 3.8861 26 6 0.2597 9.1428 3.3045 27 6 -0.5378 4.5532 1.4553 28 6 0.7208 3.8723 0.8962 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0544 3.3945 -0.7865 35 1 3.1604 2.7646 1.0868 36 1 2.7232 1.2841 1.9730 37 1 0.3230 2.0240 1.9289 38 1 2.2766 4.0471 3.1163 39 1 1.7975 2.5094 3.8748 40 1 0.4899 4.4855 4.7326 41 1 -0.5404 3.2419 3.9810 42 1 -1.9473 6.9447 1.8308 43 1 -0.2722 7.3444 1.3808 44 1 -1.1423 9.6852 1.0050 45 1 -2.7573 9.2961 1.6486 46 1 -2.4680 10.9568 3.4452 47 1 -2.2155 11.7322 1.8624 48 1 -0.4592 12.3868 3.5125 49 1 0.2271 11.5127 2.1219 50 1 0.6949 8.4599 4.0342 51 1 0.9066 9.1999 2.4291 52 1 -1.3701 3.8493 1.4502 53 1 -0.7869 5.4213 0.8451 54 1 1.5284 4.6006 0.8212 55 1 0.5050 3.4654 -0.0918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328588655.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:36 Heat of formation + Delta-G solvation = -100.248956 kcal Electronic energy + Delta-G solvation = -31610.219763 eV Core-core repulsion = 27646.054956 eV Total energy + Delta-G solvation = -3964.164807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.46865 -40.17057 -38.97026 -37.25172 -35.44823 -34.16218 -33.71460 -33.05314 -31.91977 -30.55316 -29.06589 -27.82985 -25.97561 -25.85878 -24.37083 -23.93855 -23.20517 -21.98597 -21.31604 -20.91158 -19.78480 -18.51267 -18.10459 -17.36061 -17.04080 -16.87185 -16.76414 -16.32492 -15.80859 -15.60326 -15.54138 -15.34461 -15.18997 -14.90779 -14.62026 -14.41072 -14.09253 -14.01926 -13.73642 -13.60140 -13.54119 -13.40364 -13.11060 -12.97673 -12.92984 -12.66281 -12.63079 -12.25110 -12.18871 -12.12498 -12.05987 -11.96630 -11.86893 -11.73721 -11.62900 -11.50172 -11.27056 -11.13517 -10.98676 -10.64851 -10.40352 -10.38912 -9.58472 -8.45480 -7.73472 -5.35378 1.44251 1.49959 1.57418 1.62127 2.06206 2.54610 2.95174 3.30816 3.47403 3.71960 3.75212 3.79389 3.92431 3.97254 4.02705 4.12329 4.19572 4.24529 4.27165 4.33315 4.43848 4.50487 4.51801 4.54838 4.60121 4.66316 4.69414 4.73611 4.83205 4.84856 4.86755 4.89768 4.92874 4.95047 4.96089 5.06453 5.09524 5.14590 5.16762 5.24302 5.26660 5.36606 5.39693 5.41018 5.46701 5.54661 5.67018 5.74500 5.81722 5.96768 6.26091 6.46424 6.54782 7.18313 7.26543 7.96899 8.50517 9.20849 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.003206 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.257493 B = 8731.454171 C = 9866.286768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.243 4.243 5 H 0.056 0.944 6 C -0.028 4.028 7 N -0.920 5.920 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.291 1.291 11 H -0.300 1.300 12 C 0.156 3.844 13 C -0.087 4.087 14 C -0.120 4.120 15 C 0.118 3.882 16 N -0.608 5.608 17 C 0.506 3.494 18 O -0.582 6.582 19 C -0.131 4.131 20 C -0.098 4.098 21 H 0.069 0.931 22 C -0.116 4.116 23 C -0.151 4.151 24 C 0.046 3.954 25 O -0.407 6.407 26 C 0.061 3.939 27 C 0.110 3.890 28 C -0.108 4.108 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.246 0.754 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.047 0.953 52 H 0.086 0.914 53 H 0.101 0.899 54 H 0.027 0.973 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.136 10.050 4.560 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.374 4.374 5 H 0.073 0.927 6 C -0.226 4.226 7 N -0.565 5.565 8 Si 0.765 3.235 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.228 1.228 12 C 0.029 3.971 13 C -0.108 4.108 14 C -0.159 4.159 15 C -0.004 4.004 16 N -0.340 5.340 17 C 0.296 3.704 18 O -0.463 6.463 19 C -0.170 4.170 20 C -0.117 4.117 21 H 0.088 0.912 22 C -0.154 4.154 23 C -0.189 4.189 24 C -0.030 4.030 25 O -0.327 6.327 26 C -0.016 4.016 27 C -0.012 4.012 28 C -0.146 4.146 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.065 0.935 52 H 0.104 0.896 53 H 0.120 0.880 54 H 0.046 0.954 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.816 10.307 5.310 18.813 hybrid contribution 0.882 0.353 -0.856 1.279 sum -13.934 10.661 4.454 18.101 Atomic orbital electron populations 1.22149 0.97178 1.00539 1.00934 1.20960 0.93892 0.86004 0.98220 1.43981 1.76324 1.09286 1.02347 1.19058 1.03454 1.20371 0.94498 0.92671 1.25663 0.94080 1.03282 0.99529 1.70145 1.03784 1.38089 1.44434 0.85698 0.77979 0.80360 0.79503 1.18265 1.21814 1.22788 1.20833 0.95491 0.95466 0.85277 1.21569 0.99358 0.96723 0.93157 1.21845 0.96995 0.99670 0.97350 1.21532 0.95921 0.90861 0.92096 1.48308 1.64443 1.08934 1.12343 1.21239 0.76976 0.83012 0.89172 1.90635 1.54086 1.79194 1.22360 1.21771 1.04785 0.92749 0.97713 1.21450 0.97498 0.93662 0.99125 0.91246 1.21685 1.02168 0.93962 0.97547 1.22163 0.97290 0.97777 1.01653 1.22845 0.94126 0.91820 0.94182 1.87925 1.84404 1.19497 1.40839 1.22764 0.96394 0.83942 0.98451 1.22078 0.97716 1.00781 0.80593 1.21787 0.96011 0.96681 1.00166 0.92120 0.93033 0.94180 0.95534 0.94303 0.94449 0.92680 0.96545 0.91412 0.94265 0.90297 0.90577 0.90022 0.85692 0.87773 0.90822 0.89448 0.91592 0.88542 0.87828 0.92721 0.90000 0.93492 0.89629 0.88043 0.95402 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.21 71.98 0.73 -3.92 16 2 C 0.13 5.26 6.44 86.38 0.56 5.82 16 3 N -0.60 -27.20 2.31 -702.01 -1.62 -28.82 16 4 C -0.24 -12.15 7.35 84.03 0.62 -11.53 16 5 H 0.06 2.76 7.92 -2.91 -0.02 2.74 16 6 C -0.03 -1.48 4.94 84.86 0.42 -1.06 16 7 N -0.92 -52.12 11.50 21.65 0.25 -51.87 16 8 Si 0.94 42.01 29.61 68.60 2.03 44.04 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 12 C 0.16 6.77 4.84 86.38 0.42 7.19 16 13 C -0.09 -2.98 2.36 -10.77 -0.03 -3.01 16 14 C -0.12 -3.69 5.36 30.67 0.16 -3.53 16 15 C 0.12 3.24 6.43 86.36 0.56 3.79 16 16 N -0.61 -16.30 2.97 -818.03 -2.43 -18.73 16 17 C 0.51 14.00 7.43 87.66 0.65 14.65 16 18 O -0.58 -20.10 13.39 -3.02 -0.04 -20.14 16 19 C -0.13 -2.59 3.53 29.85 0.11 -2.49 16 20 C -0.10 -2.07 2.03 -10.70 -0.02 -2.09 16 21 H 0.07 1.71 7.96 -2.39 -0.02 1.69 16 22 C -0.12 -1.73 5.32 30.71 0.16 -1.57 16 23 C -0.15 -2.18 6.14 30.68 0.19 -1.99 16 24 C 0.05 0.84 6.84 72.01 0.49 1.33 16 25 O -0.41 -10.91 10.77 -148.98 -1.60 -12.52 16 26 C 0.06 1.60 5.84 72.01 0.42 2.02 16 27 C 0.11 2.68 6.37 86.51 0.55 3.23 16 28 C -0.11 -3.64 4.97 30.82 0.15 -3.49 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.53 6.47 -2.39 -0.02 1.52 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 34 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.06 2.86 5.54 -2.39 -0.01 2.85 16 36 H 0.02 0.70 7.86 -2.39 -0.02 0.68 16 37 H 0.07 2.18 6.47 -2.39 -0.02 2.16 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.25 7.01 -2.38 -0.02 2.24 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.13 1.77 7.93 -2.39 -0.02 1.75 16 43 H 0.10 1.94 7.70 -2.39 -0.02 1.92 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.08 2.64 6.02 -2.38 -0.01 2.62 16 51 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 53 H 0.10 1.98 5.93 -2.39 -0.01 1.97 16 54 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 55 H 0.08 3.01 6.26 -2.39 -0.01 2.99 16 Total: -1.00 -64.76 409.53 3.57 -61.18 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.84 Total: 23.49 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.14 Total: 3.36 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.80 Total: -99.42 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.64 Total: -32.66 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.76 3.57 -61.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328588655.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.064 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds