Wall clock time and date at job start Tue Mar 31 2020 23:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46718 * 2 1 4 4 O 1.42901 * 109.47222 * 119.99801 * 2 1 3 5 5 C 1.42898 * 114.00203 * 270.00358 * 4 2 1 6 6 C 1.53002 * 109.47086 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49577 * 243.61981 * 6 5 4 8 8 C 1.53005 * 117.49644 * 174.99792 * 6 5 4 9 9 C 1.50697 * 109.47285 * 240.00072 * 2 1 3 10 10 O 1.21277 * 120.00399 * 245.00092 * 9 2 1 11 11 N 1.34777 * 119.99979 * 65.00011 * 9 2 1 12 12 C 1.46934 * 120.62912 * 359.71716 * 11 9 2 13 13 C 1.53627 * 108.53951 * 126.37012 * 12 11 9 14 14 C 1.53052 * 109.23914 * 54.85864 * 13 12 11 15 15 C 1.52995 * 109.44341 * 178.49620 * 14 13 12 16 16 C 1.53002 * 109.47313 * 295.05983 * 15 14 13 17 17 N 1.46506 * 109.47240 * 180.02562 * 16 15 14 18 18 C 1.46500 * 119.99666 * 270.00049 * 17 16 15 19 19 C 1.36933 * 120.00109 * 90.00014 * 17 16 15 20 20 H 1.08008 * 120.00116 * 22.34181 * 19 17 16 21 21 C 1.38812 * 120.00125 * 202.34569 * 19 17 16 22 22 N 1.31623 * 119.99504 * 11.34237 * 21 19 17 23 23 Si 1.86797 * 120.00253 * 191.34392 * 21 19 17 24 24 H 1.48502 * 109.47091 * 60.00229 * 23 21 19 25 25 H 1.48503 * 109.47048 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47199 * 300.00165 * 23 21 19 27 27 C 1.53031 * 109.53739 * 298.50723 * 14 13 12 28 28 C 1.46926 * 120.63252 * 180.02562 * 11 9 2 29 29 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46691 * 300.00114 * 1 2 3 31 31 H 1.09002 * 109.46696 * 59.99810 * 1 2 3 32 32 H 1.09004 * 109.46830 * 299.99717 * 5 4 2 33 33 H 1.08994 * 109.47219 * 59.99419 * 5 4 2 34 34 H 1.09001 * 115.54908 * 29.32768 * 6 5 4 35 35 H 1.08998 * 117.50075 * 359.97438 * 7 6 5 36 36 H 1.09004 * 117.49455 * 145.02429 * 7 6 5 37 37 H 1.08999 * 117.49713 * 214.97592 * 8 6 5 38 38 H 1.08992 * 117.50084 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.58367 * 246.20280 * 12 11 9 40 40 H 1.08994 * 109.58656 * 6.63159 * 12 11 9 41 41 H 1.08992 * 109.63539 * 294.86860 * 13 12 11 42 42 H 1.08992 * 109.43089 * 174.72118 * 13 12 11 43 43 H 1.08999 * 109.45964 * 58.53065 * 14 13 12 44 44 H 1.09003 * 109.47786 * 55.05927 * 15 14 13 45 45 H 1.09006 * 109.46820 * 175.06377 * 15 14 13 46 46 H 1.09005 * 109.47196 * 300.00124 * 16 15 14 47 47 H 1.08998 * 109.47172 * 60.00387 * 16 15 14 48 48 H 1.08998 * 109.47285 * 94.20993 * 18 17 16 49 49 H 1.09000 * 109.46955 * 214.21341 * 18 17 16 50 50 H 1.09005 * 109.47092 * 334.20707 * 18 17 16 51 51 H 0.96998 * 119.99623 * 179.97438 * 22 21 19 52 52 H 1.09006 * 109.50052 * 301.41422 * 27 14 13 53 53 H 1.08995 * 109.49897 * 181.32027 * 27 14 13 54 54 H 1.08997 * 109.58476 * 353.36771 * 28 11 9 55 55 H 1.08993 * 109.59114 * 113.65395 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7091 -0.6406 3.4788 7 6 1.8138 -0.7258 4.7166 8 6 3.0911 0.1158 4.7528 9 6 2.0324 -0.7104 -1.2304 10 8 2.6530 -1.7466 -1.1215 11 7 1.7920 -0.1941 -2.4520 12 6 1.0362 1.0572 -2.6004 13 6 1.8683 2.0330 -3.4463 14 6 2.2392 1.3622 -4.7711 15 6 3.0362 2.3433 -5.6331 16 6 2.1459 3.5283 -6.0128 17 7 2.9089 4.4674 -6.8388 18 6 3.6639 5.5523 -6.2069 19 6 2.9165 4.3311 -8.2013 20 1 2.1170 3.7988 -8.6952 21 6 3.9517 4.8771 -8.9477 22 7 5.0317 5.3268 -8.3446 23 14 3.8120 4.9735 -10.8080 24 1 2.6324 5.7982 -11.1737 25 1 5.0409 5.5938 -11.3651 26 1 3.6514 3.6060 -11.3639 27 6 3.0885 0.1195 -4.4953 28 6 2.2748 -0.8754 -3.6609 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.9320 0.9514 2.0450 33 1 1.2539 0.6547 2.5588 34 1 3.2972 -1.5214 3.2210 35 1 0.8623 -0.1948 4.6870 36 1 1.8126 -1.6629 5.2733 37 1 3.9301 -0.2676 5.3334 38 1 2.9801 1.2001 4.7468 39 1 0.0880 0.8544 -3.0982 40 1 0.8502 1.4904 -1.6177 41 1 2.7769 2.3018 -2.9077 42 1 1.2831 2.9309 -3.6446 43 1 1.3303 1.0714 -5.2978 44 1 3.8989 2.7023 -5.0719 45 1 3.3755 1.8391 -6.5380 46 1 1.2832 3.1694 -6.5741 47 1 1.8066 4.0325 -5.1080 48 1 4.6953 5.2354 -6.0526 49 1 3.6463 6.4308 -6.8519 50 1 3.2116 5.7981 -5.2461 51 1 5.7553 5.7080 -8.8662 52 1 3.9858 0.4063 -3.9468 53 1 3.3719 -0.3445 -5.4400 54 1 2.9062 -1.7176 -3.3781 55 1 1.4254 -1.2343 -4.2420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482502587.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:46 Heat of formation + Delta-G solvation = -58.063390 kcal Electronic energy + Delta-G solvation = -30011.574164 eV Core-core repulsion = 26049.238661 eV Total energy + Delta-G solvation = -3962.335503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.53728 -39.60458 -38.80985 -37.54835 -37.36490 -35.30386 -33.49198 -32.72128 -31.47104 -30.10876 -28.08574 -27.90262 -26.81729 -25.11291 -24.30762 -23.53681 -23.23949 -22.02164 -21.73234 -21.20188 -20.10678 -18.72137 -18.52605 -17.76306 -17.24121 -16.81339 -16.50337 -16.27323 -15.99664 -15.65358 -15.56107 -15.35758 -15.15258 -15.01361 -14.78586 -14.43971 -14.29806 -14.09729 -13.80033 -13.58466 -13.52217 -13.31898 -12.97035 -12.85092 -12.75754 -12.59805 -12.55710 -12.40915 -12.38999 -12.19477 -12.11954 -12.02988 -11.99248 -11.68204 -11.55762 -11.41820 -11.33638 -11.27525 -11.06296 -10.73951 -10.59915 -10.40696 -9.69006 -8.73312 -7.80223 -5.26995 1.46759 1.48725 1.50748 1.55197 1.69983 2.53055 2.62354 2.95511 3.33385 3.39657 3.68295 3.75992 3.83957 3.91466 3.92207 3.96551 3.99221 4.04621 4.12874 4.13574 4.30886 4.34651 4.40906 4.45896 4.49280 4.59690 4.67233 4.69603 4.72447 4.77446 4.79474 4.81504 4.83321 4.90359 4.94501 4.98995 5.00615 5.08386 5.10820 5.20111 5.22297 5.23846 5.26309 5.32670 5.36134 5.49017 5.59293 5.62035 5.68719 5.77612 6.08866 6.37041 6.38112 7.10011 7.19062 7.93590 8.35807 9.23482 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.001901 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.360269 B =14723.781222 C =15278.758418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.387 6.387 5 C 0.089 3.911 6 C -0.178 4.178 7 C -0.172 4.172 8 C -0.163 4.163 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.603 5.603 12 C 0.099 3.901 13 C -0.128 4.128 14 C -0.075 4.075 15 C -0.117 4.117 16 C 0.150 3.850 17 N -0.624 5.624 18 C 0.179 3.821 19 C -0.257 4.257 20 H 0.072 0.928 21 C -0.059 4.059 22 N -0.943 5.943 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.122 4.122 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.065 0.935 48 H -0.003 1.003 49 H 0.015 0.985 50 H 0.032 0.968 51 H 0.246 0.754 52 H 0.046 0.954 53 H 0.073 0.927 54 H 0.070 0.930 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 -8.727 23.899 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.127 0.873 4 O -0.306 6.306 5 C 0.013 3.987 6 C -0.196 4.196 7 C -0.209 4.209 8 C -0.200 4.200 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.166 4.166 14 C -0.094 4.094 15 C -0.157 4.157 16 C 0.025 3.975 17 N -0.347 5.347 18 C 0.034 3.966 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.254 4.254 22 N -0.590 5.590 23 Si 0.795 3.205 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.202 1.202 27 C -0.161 4.161 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.015 0.985 49 H 0.033 0.967 50 H 0.050 0.950 51 H 0.055 0.945 52 H 0.065 0.935 53 H 0.091 0.909 54 H 0.088 0.912 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.175 -9.373 23.904 28.416 hybrid contribution 1.016 0.160 -1.421 1.754 sum -11.160 -9.213 22.483 26.737 Atomic orbital electron populations 1.22418 0.91205 1.03737 1.05513 1.22007 0.96748 0.96414 0.83729 0.87324 1.88008 1.86943 1.35810 1.19856 1.22276 1.00264 0.91747 0.84417 1.22122 1.05581 1.02673 0.89265 1.23165 0.95493 1.02531 0.99685 1.23076 0.99357 0.99546 0.98017 1.21042 0.78936 0.84997 0.85382 1.90673 1.42439 1.25963 1.86825 1.48183 1.54997 1.25570 1.04954 1.22386 0.94886 0.82364 1.02546 1.22096 1.00591 0.98899 0.95002 1.21057 0.98536 0.93831 0.95960 1.22028 0.98712 0.97219 0.97744 1.21090 0.93066 0.89473 0.93884 1.44276 1.57351 1.30266 1.02801 1.20503 0.93256 0.89849 0.93002 1.19529 1.03645 1.32022 0.83532 0.91056 1.25796 0.95143 1.02262 1.02153 1.70238 1.06770 1.46846 1.35159 0.85342 0.76494 0.77932 0.80703 1.20296 1.22360 1.20233 1.21899 0.98202 0.96249 0.99713 1.21576 0.99001 0.95011 0.84990 0.92577 0.89083 0.88176 0.92304 0.90726 0.88945 0.87475 0.88392 0.87898 0.87298 0.88374 0.86989 0.92635 0.88648 0.89776 0.95052 0.95159 0.93418 0.91702 0.98511 0.96663 0.94961 0.94524 0.93498 0.90880 0.91173 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.10 71.98 0.65 -1.30 16 2 C 0.07 1.28 2.30 29.85 0.07 1.35 16 3 H 0.11 1.39 7.09 -2.38 -0.02 1.37 16 4 O -0.39 -8.84 9.53 -129.99 -1.24 -10.07 16 5 C 0.09 1.37 6.03 71.98 0.43 1.81 16 6 C -0.18 -2.81 6.06 -10.79 -0.07 -2.87 16 7 C -0.17 -1.96 10.18 30.60 0.31 -1.65 16 8 C -0.16 -1.76 10.25 30.60 0.31 -1.45 16 9 C 0.51 12.82 7.12 87.66 0.62 13.44 16 10 O -0.58 -20.61 15.92 15.97 0.25 -20.35 16 11 N -0.60 -12.38 2.97 -817.99 -2.43 -14.80 16 12 C 0.10 1.33 5.00 86.51 0.43 1.77 16 13 C -0.13 -2.34 5.16 30.82 0.16 -2.18 16 14 C -0.07 -1.77 2.15 -10.77 -0.02 -1.80 16 15 C -0.12 -4.03 5.01 30.59 0.15 -3.87 16 16 C 0.15 5.55 5.47 86.38 0.47 6.02 16 17 N -0.62 -30.75 2.93 -726.90 -2.13 -32.88 16 18 C 0.18 8.83 9.01 127.77 1.15 9.98 16 19 C -0.26 -14.01 9.67 84.03 0.81 -13.20 16 20 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 21 C -0.06 -3.34 5.13 84.86 0.44 -2.90 16 22 N -0.94 -56.53 10.58 21.65 0.23 -56.30 16 23 Si 0.97 45.27 29.57 68.60 2.03 47.30 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 C -0.12 -2.99 5.36 30.68 0.16 -2.82 16 28 C 0.12 2.60 6.43 86.38 0.56 3.16 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.67 7.87 -2.39 -0.02 0.66 16 31 H 0.10 0.72 5.39 -2.39 -0.01 0.71 16 32 H 0.06 0.83 8.09 -2.38 -0.02 0.81 16 33 H 0.07 0.78 7.60 -2.39 -0.02 0.77 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 0.95 8.03 -2.39 -0.02 0.93 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.94 4.65 -2.39 -0.01 0.92 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.55 6.50 -2.39 -0.02 1.53 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.05 1.70 8.03 -2.38 -0.02 1.68 16 47 H 0.06 2.02 6.26 -2.39 -0.01 2.01 16 48 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 49 H 0.01 0.80 7.19 -2.39 -0.02 0.78 16 50 H 0.03 1.31 7.85 -2.38 -0.02 1.29 16 51 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 52 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 53 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 55 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.88 423.20 4.21 -71.67 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.84 Total: 11.96 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.65 Total: 3.48 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.32 Total: -103.98 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.98 Total: -30.43 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.88 4.21 -71.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482502587.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.603 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds