Wall clock time and date at job start Tue Mar 31 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99865 * 2 1 4 4 C 1.52998 * 109.46969 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47374 * 65.00041 * 4 3 2 6 6 C 1.36937 * 120.00142 * 270.00244 * 5 4 3 7 7 H 1.08004 * 120.00507 * 141.79471 * 6 5 4 8 8 C 1.38814 * 119.99919 * 321.79928 * 6 5 4 9 9 N 1.31620 * 119.99832 * 339.27347 * 8 6 5 10 10 Si 1.86801 * 120.00281 * 159.27959 * 8 6 5 11 11 H 1.48500 * 109.47033 * 89.99603 * 10 8 6 12 12 H 1.48497 * 109.46904 * 209.99768 * 10 8 6 13 13 H 1.48502 * 109.46831 * 329.99722 * 10 8 6 14 14 C 1.46496 * 120.00277 * 89.99703 * 5 4 3 15 15 C 1.53043 * 109.46228 * 124.70815 * 14 5 4 16 16 C 1.53195 * 109.31265 * 181.38680 * 15 14 5 17 17 N 1.46928 * 108.89318 * 305.29238 * 16 15 14 18 18 C 1.34774 * 120.62910 * 233.68079 * 17 16 15 19 19 O 1.21283 * 120.00134 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99927 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.47222 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.46838 * 305.00067 * 21 20 18 23 23 C 1.52996 * 109.46943 * 65.00201 * 21 20 18 24 24 C 1.52996 * 109.46972 * 185.00248 * 21 20 18 25 25 C 1.53001 * 117.49989 * 128.75054 * 24 21 20 26 26 C 1.52996 * 117.50385 * 60.09067 * 24 21 20 27 27 C 1.47195 * 118.55387 * 53.54557 * 17 16 15 28 28 C 1.53046 * 109.46412 * 244.77647 * 14 5 4 29 29 H 1.09002 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47370 * 300.00554 * 1 2 3 31 31 H 1.09000 * 109.47243 * 60.00253 * 1 2 3 32 32 H 1.09004 * 109.47046 * 59.99924 * 3 2 1 33 33 H 1.08999 * 109.47237 * 299.99393 * 3 2 1 34 34 H 1.09007 * 109.47375 * 304.99700 * 4 3 2 35 35 H 1.09003 * 109.47002 * 184.99997 * 4 3 2 36 36 H 0.96995 * 120.00079 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.46011 * 4.73794 * 14 5 4 38 38 H 1.09000 * 109.49682 * 61.43348 * 15 14 5 39 39 H 1.09004 * 109.52370 * 301.35745 * 15 14 5 40 40 H 1.08992 * 109.58418 * 65.15903 * 16 15 14 41 41 H 1.09000 * 109.58406 * 185.43519 * 16 15 14 42 42 H 1.08995 * 109.47500 * 300.00535 * 20 18 17 43 43 H 1.09004 * 109.47144 * 60.00431 * 20 18 17 44 44 H 1.08997 * 109.46872 * 179.97438 * 23 21 20 45 45 H 1.09004 * 109.47267 * 300.00092 * 23 21 20 46 46 H 1.09000 * 109.47463 * 60.00248 * 23 21 20 47 47 H 1.09001 * 115.54930 * 274.41931 * 24 21 20 48 48 H 1.09002 * 117.49764 * 359.97438 * 25 24 21 49 49 H 1.09000 * 117.50260 * 145.01650 * 25 24 21 50 50 H 1.08999 * 117.50269 * 214.98536 * 26 24 21 51 51 H 1.09004 * 117.49455 * 359.97438 * 26 24 21 52 52 H 1.09001 * 109.53563 * 186.67230 * 27 17 16 53 53 H 1.08994 * 109.68393 * 66.35924 * 27 17 16 54 54 H 1.08993 * 109.49693 * 298.56837 * 28 14 5 55 55 H 1.09003 * 109.49340 * 58.66334 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0978 -0.7974 -1.3344 7 1 3.8136 -1.3103 -2.2415 8 6 4.5857 -1.5185 -0.2532 9 7 5.3000 -0.9141 0.6724 10 14 4.2289 -3.3467 -0.1122 11 1 5.3031 -4.1146 -0.7915 12 1 4.1758 -3.7315 1.3211 13 1 2.9239 -3.6472 -0.7540 14 6 4.2883 1.3997 -2.4129 15 6 5.7095 1.0964 -2.8927 16 6 6.0443 1.9966 -4.0863 17 7 5.0123 1.8227 -5.1175 18 6 5.3521 1.5040 -6.3822 19 8 6.5192 1.3575 -6.6779 20 6 4.2820 1.3296 -7.4288 21 6 4.9313 0.9736 -8.7677 22 1 5.6717 1.7310 -9.0251 23 6 5.6146 -0.3907 -8.6563 24 6 3.8578 0.9190 -9.8565 25 6 4.1059 1.7232 -11.1342 26 6 3.0572 2.1951 -10.1240 27 6 3.6013 2.0012 -4.7381 28 6 3.2939 1.1010 -3.5373 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5685 0.8428 35 1 3.9784 2.1766 0.0902 36 1 5.6406 -1.4178 1.4281 37 1 4.2158 2.4510 -2.1341 38 1 5.7761 0.0514 -3.1953 39 1 6.4154 1.2868 -2.0842 40 1 6.0670 3.0375 -3.7638 41 1 7.0169 1.7186 -4.4921 42 1 3.6064 0.5289 -7.1278 43 1 3.7209 2.2583 -7.5330 44 1 6.0768 -0.6445 -9.6103 45 1 6.3794 -0.3518 -7.8806 46 1 4.8742 -1.1481 -8.3989 47 1 3.3353 -0.0326 -9.9542 48 1 5.0338 2.2915 -11.1990 49 1 3.7465 1.3008 -12.0726 50 1 2.0082 2.0830 -10.3980 51 1 3.2951 3.0734 -9.5240 52 1 2.9608 1.7246 -5.5755 53 1 3.4223 3.0423 -4.4695 54 1 3.3831 0.0559 -3.8337 55 1 2.2800 1.2950 -3.1872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483820074.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:57 Heat of formation + Delta-G solvation = -59.432134 kcal Electronic energy + Delta-G solvation = -31353.859505 eV Core-core repulsion = 27391.464649 eV Total energy + Delta-G solvation = -3962.394856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.28789 -39.41799 -38.68310 -38.12424 -36.48243 -34.16029 -33.70383 -32.38754 -31.86556 -29.89024 -28.73632 -27.12312 -26.33568 -24.89952 -24.42606 -23.68843 -23.11760 -22.33316 -21.55396 -20.66880 -19.79010 -18.41281 -17.89453 -17.25338 -16.94123 -16.66121 -16.50891 -16.41611 -16.19818 -15.67274 -15.55331 -15.41604 -15.17506 -14.98638 -14.72644 -14.41088 -14.00631 -13.89170 -13.65880 -13.40279 -13.29361 -13.19716 -12.94620 -12.83572 -12.71095 -12.51839 -12.37694 -12.32377 -12.22566 -12.20893 -12.13216 -11.99208 -11.78244 -11.71776 -11.52745 -11.43981 -11.07719 -11.03143 -10.80810 -10.56562 -10.37253 -10.26547 -9.54502 -8.40276 -7.69812 -5.28240 1.43746 1.47375 1.55763 1.70579 2.11244 2.58563 2.96200 3.25818 3.41129 3.53853 3.65087 3.83436 3.93796 4.06210 4.09161 4.20482 4.23699 4.28832 4.35080 4.41668 4.46617 4.50227 4.53370 4.58598 4.64947 4.66933 4.68448 4.73157 4.76841 4.83824 4.86087 4.86879 4.87942 4.92632 4.94884 4.96447 5.03760 5.06591 5.15533 5.17811 5.23079 5.27736 5.34318 5.41762 5.50259 5.54709 5.64693 5.72569 5.78198 5.89336 6.54248 6.54753 6.73019 7.26949 7.32252 8.01850 8.50514 9.26173 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.002943 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.860058 B = 9511.613125 C = 9943.367350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.216 4.216 7 H 0.040 0.960 8 C -0.029 4.029 9 N -0.920 5.920 10 Si 0.936 3.064 11 H -0.294 1.294 12 H -0.296 1.296 13 H -0.277 1.277 14 C 0.173 3.827 15 C -0.118 4.118 16 C 0.122 3.878 17 N -0.609 5.609 18 C 0.506 3.494 19 O -0.585 6.585 20 C -0.126 4.126 21 C -0.038 4.038 22 H 0.061 0.939 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.183 4.183 26 C -0.173 4.173 27 C 0.115 3.885 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.244 0.756 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.108 0.892 53 H 0.092 0.908 54 H 0.038 0.962 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 10.278 -16.401 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.347 4.347 7 H 0.058 0.942 8 C -0.225 4.225 9 N -0.566 5.566 10 Si 0.767 3.233 11 H -0.221 1.221 12 H -0.223 1.223 13 H -0.203 1.203 14 C 0.066 3.934 15 C -0.158 4.158 16 C -0.002 4.002 17 N -0.341 5.341 18 C 0.297 3.703 19 O -0.466 6.466 20 C -0.165 4.165 21 C -0.057 4.057 22 H 0.079 0.921 23 C -0.206 4.206 24 C -0.171 4.171 25 C -0.220 4.220 26 C -0.210 4.210 27 C -0.008 4.008 28 C -0.170 4.170 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.127 0.873 48 H 0.107 0.893 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.115 0.885 52 H 0.126 0.874 53 H 0.110 0.890 54 H 0.057 0.943 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.885 9.980 -16.389 21.146 hybrid contribution 0.139 -1.311 0.850 1.568 sum -8.746 8.669 -15.539 19.827 Atomic orbital electron populations 1.22799 0.81726 1.02393 1.00083 1.88153 1.19446 1.28875 1.95181 1.23240 0.96559 0.83886 0.98470 1.20968 0.89861 0.96184 0.91636 1.43890 1.75620 1.02076 1.08735 1.18661 1.33366 0.83339 0.99296 0.94209 1.25487 0.97526 0.99796 0.99725 1.70060 1.36493 1.36142 1.13861 0.85766 0.77800 0.83562 0.76174 1.22116 1.22307 1.20256 1.20541 0.91459 0.93765 0.87600 1.22049 0.99218 0.98405 0.96095 1.21481 0.91555 0.99652 0.87477 1.48355 1.08514 1.68660 1.08592 1.21347 0.90522 0.74989 0.83469 1.90623 1.22131 1.52794 1.81080 1.21783 0.96756 1.05360 0.92603 1.20360 0.95472 0.97747 0.92135 0.92067 1.21869 1.00578 0.96448 1.01678 1.22294 1.00865 0.96883 0.97065 1.23078 1.01012 1.03913 0.93975 1.23048 0.97511 0.97617 1.02796 1.21997 0.80036 1.00650 0.98085 1.22215 1.00003 0.99081 0.95662 0.90378 0.93707 0.93565 0.93859 0.93670 0.92000 0.92921 0.94643 0.91574 0.94998 0.93456 0.89965 0.91534 0.87757 0.86405 0.92378 0.93642 0.92679 0.87256 0.89325 0.87990 0.87556 0.88479 0.87415 0.89017 0.94340 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.41 10.18 -148.98 -1.52 -17.93 16 3 C 0.06 2.09 6.28 71.98 0.45 2.54 16 4 C 0.14 6.15 5.70 86.38 0.49 6.64 16 5 N -0.58 -26.74 2.34 -677.88 -1.59 -28.32 16 6 C -0.22 -11.47 7.60 84.03 0.64 -10.83 16 7 H 0.04 2.21 7.09 -2.91 -0.02 2.19 16 8 C -0.03 -1.64 4.97 84.86 0.42 -1.22 16 9 N -0.92 -53.90 11.47 21.65 0.25 -53.65 16 10 Si 0.94 46.75 29.60 68.60 2.03 48.78 16 11 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.17 6.35 2.60 45.02 0.12 6.47 16 15 C -0.12 -4.59 5.23 30.67 0.16 -4.43 16 16 C 0.12 3.85 6.42 86.36 0.55 4.40 16 17 N -0.61 -16.84 2.98 -818.22 -2.44 -19.28 16 18 C 0.51 14.44 7.42 87.66 0.65 15.09 16 19 O -0.59 -21.23 13.38 -3.04 -0.04 -21.27 16 20 C -0.13 -2.46 3.44 29.85 0.10 -2.36 16 21 C -0.04 -0.78 2.19 -10.80 -0.02 -0.80 16 22 H 0.06 1.44 7.71 -2.39 -0.02 1.42 16 23 C -0.15 -3.54 8.92 71.98 0.64 -2.90 16 24 C -0.15 -2.34 5.14 -10.80 -0.06 -2.40 16 25 C -0.18 -2.52 10.18 30.62 0.31 -2.21 16 26 C -0.17 -2.12 9.68 30.62 0.30 -1.82 16 27 C 0.11 2.49 6.35 86.31 0.55 3.04 16 28 C -0.13 -3.95 5.38 30.68 0.17 -3.79 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 3.29 5.54 -2.38 -0.01 3.28 16 35 H 0.05 2.10 7.88 -2.39 -0.02 2.08 16 36 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.07 2.18 7.77 -2.38 -0.02 2.16 16 38 H 0.03 1.46 7.62 -2.39 -0.02 1.44 16 39 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.34 7.00 -2.39 -0.02 2.33 16 42 H 0.10 1.88 7.69 -2.39 -0.02 1.86 16 43 H 0.12 1.67 6.94 -2.39 -0.02 1.65 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.39 5.95 -2.38 -0.01 1.37 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 48 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 49 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.10 1.14 7.59 -2.39 -0.02 1.12 16 52 H 0.11 1.73 5.97 -2.39 -0.01 1.71 16 53 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 54 H 0.04 1.40 7.24 -2.39 -0.02 1.39 16 55 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.39 422.09 4.25 -65.14 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.84 Total: 19.08 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 6.72 Total: 7.46 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -3.78 Total: -101.26 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.56 Total: -39.20 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -69.39 4.25 -65.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483820074.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.706 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds