Wall clock time and date at job start Tue Mar 31 2020 22:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46954 * 2 1 4 4 N 1.46499 * 109.46939 * 120.00311 * 2 1 3 5 5 C 1.36936 * 120.00084 * 275.00158 * 4 2 1 6 6 H 1.07998 * 120.00009 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00228 * 180.02562 * 5 4 2 8 8 N 1.31611 * 119.99767 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99758 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47219 * 120.00055 * 9 7 5 12 12 H 1.48505 * 109.47188 * 239.99479 * 9 7 5 13 13 C 1.53003 * 109.47219 * 240.00302 * 2 1 3 14 14 H 1.08996 * 109.51219 * 184.90179 * 13 2 1 15 15 C 1.52876 * 109.58276 * 64.88063 * 13 2 1 16 16 N 1.47153 * 108.60661 * 187.91968 * 15 13 2 17 17 C 1.34777 * 120.98485 * 230.50257 * 16 15 13 18 18 O 1.21273 * 119.99626 * 4.57527 * 17 16 15 19 19 C 1.50700 * 119.99911 * 184.58228 * 17 16 15 20 20 C 1.53001 * 115.55900 * 294.53403 * 19 17 16 21 21 C 1.53002 * 117.50417 * 80.22359 * 19 17 16 22 22 C 1.52997 * 117.49817 * 214.98219 * 21 19 17 23 23 C 1.53002 * 117.49384 * 0.02562 * 21 19 17 24 24 C 1.52993 * 117.50036 * 148.84723 * 19 17 16 25 25 C 1.53003 * 117.49830 * 359.97438 * 24 19 17 26 26 C 1.52997 * 117.50162 * 144.99274 * 24 19 17 27 27 C 1.47161 * 118.03212 * 50.23185 * 16 15 13 28 28 C 1.53297 * 108.38416 * 309.71137 * 27 16 15 29 29 O 1.42956 * 109.21903 * 52.30530 * 28 27 16 30 30 H 1.09002 * 109.46777 * 60.00204 * 1 2 3 31 31 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47376 * 299.99892 * 1 2 3 33 33 H 0.97004 * 120.00336 * 95.00029 * 4 2 1 34 34 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.61457 * 68.10343 * 15 13 2 36 36 H 1.08997 * 109.52525 * 307.68561 * 15 13 2 37 37 H 1.09003 * 109.47034 * 267.77469 * 20 19 17 38 38 H 1.08997 * 109.47457 * 27.77722 * 20 19 17 39 39 H 1.08998 * 109.47501 * 147.77725 * 20 19 17 40 40 H 1.08991 * 109.47652 * 67.90593 * 22 21 19 41 41 H 1.09009 * 109.46422 * 187.91065 * 22 21 19 42 42 H 1.09000 * 109.47154 * 307.90218 * 22 21 19 43 43 H 1.08991 * 109.47337 * 67.03162 * 23 21 19 44 44 H 1.08998 * 109.46642 * 187.03619 * 23 21 19 45 45 H 1.09006 * 109.47195 * 307.02734 * 23 21 19 46 46 H 1.09009 * 109.47173 * 70.48909 * 25 24 19 47 47 H 1.09001 * 109.47158 * 190.48877 * 25 24 19 48 48 H 1.09000 * 109.47241 * 310.49217 * 25 24 19 49 49 H 1.08996 * 109.47161 * 51.75878 * 26 24 19 50 50 H 1.09002 * 109.47760 * 171.76292 * 26 24 19 51 51 H 1.09007 * 109.47393 * 291.76176 * 26 24 19 52 52 H 1.08995 * 109.68106 * 69.43461 * 27 16 15 53 53 H 1.08997 * 109.67881 * 189.95383 * 27 16 15 54 54 H 1.08997 * 109.51016 * 172.22569 * 28 27 16 55 55 H 1.08993 * 109.51342 * 292.37975 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1490 -0.0076 2.3758 6 1 1.8926 1.0403 2.4242 7 6 2.6122 -0.6619 3.5091 8 7 2.9252 -1.9389 3.4499 9 14 2.7912 0.2701 5.1179 10 1 2.3772 1.6825 4.9206 11 1 1.9309 -0.3584 6.1525 12 1 4.2083 0.2272 5.5599 13 6 2.0400 -0.7212 -1.2493 14 1 3.1264 -0.7982 -1.2072 15 6 1.6344 0.0648 -2.4962 16 7 1.9649 -0.7371 -3.6849 17 6 2.6683 -0.2077 -4.7054 18 8 3.1099 0.9183 -4.6176 19 6 2.9059 -1.0150 -5.9556 20 6 3.7772 -2.2605 -5.7814 21 6 1.7698 -1.0851 -6.9780 22 6 1.5920 -2.3952 -7.7479 23 6 0.4796 -0.3295 -6.6531 24 6 3.0185 -0.2534 -7.2776 25 6 2.8807 1.2697 -7.2294 26 6 3.9942 -0.7950 -8.3242 27 6 1.5098 -2.1361 -3.7238 28 6 1.9262 -2.8165 -2.4147 29 8 1.4705 -2.0311 -1.3105 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 1.1526 34 1 3.2485 -2.3962 4.2418 35 1 2.1789 1.0086 -2.5271 36 1 0.5622 0.2596 -2.4712 37 1 4.8184 -2.0062 -5.9801 38 1 3.6821 -2.6308 -4.7607 39 1 3.4521 -3.0320 -6.4794 40 1 1.2605 -3.1765 -7.0640 41 1 0.8468 -2.2578 -8.5315 42 1 2.5422 -2.6846 -8.1969 43 1 0.6744 0.7428 -6.6618 44 1 -0.2783 -0.5673 -7.3995 45 1 0.1234 -0.6262 -5.6665 46 1 3.7599 1.6991 -6.7490 47 1 2.7944 1.6590 -8.2439 48 1 1.9896 1.5361 -6.6610 49 1 3.7961 -1.8536 -8.4922 50 1 3.8654 -0.2485 -9.2585 51 1 5.0165 -0.6689 -7.9676 52 1 0.4250 -2.1666 -3.8245 53 1 1.9714 -2.6489 -4.5676 54 1 1.4809 -3.8100 -2.3631 55 1 3.0122 -2.9011 -2.3777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506860813.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:08 Heat of formation + Delta-G solvation = -54.489397 kcal Electronic energy + Delta-G solvation = -32176.944661 eV Core-core repulsion = 28214.764138 eV Total energy + Delta-G solvation = -3962.180523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.26852 -40.53630 -38.83269 -37.15731 -35.78745 -34.37255 -32.30525 -31.97634 -31.42213 -30.02316 -29.92401 -28.42458 -26.96638 -26.62472 -26.45763 -24.96180 -24.04951 -22.05946 -21.09923 -19.51772 -19.22281 -18.81166 -17.71231 -17.45831 -17.03642 -16.86411 -16.54712 -16.19621 -16.13373 -15.75284 -15.45512 -15.19151 -15.03794 -14.92848 -14.66483 -14.21915 -14.08300 -14.01846 -13.69047 -13.62934 -13.43609 -13.26420 -13.06961 -12.95061 -12.88026 -12.81844 -12.68387 -12.64570 -12.55348 -12.49611 -12.46081 -12.34630 -12.14717 -11.83929 -11.66469 -11.54680 -11.37109 -11.17122 -10.95392 -10.86283 -10.44780 -10.15129 -9.58622 -9.02050 -7.93354 -5.22129 1.46347 1.47267 1.49769 1.57348 1.78262 2.53908 2.56103 2.76392 3.33919 3.40496 3.51735 3.56999 3.60502 3.84471 3.92141 3.96742 4.00810 4.11494 4.13974 4.16629 4.29784 4.34426 4.46119 4.47556 4.58209 4.60115 4.63872 4.69437 4.71810 4.75222 4.79283 4.81687 4.83867 4.87550 4.93940 4.94799 5.03018 5.04184 5.07237 5.10516 5.13973 5.18230 5.22241 5.30005 5.30955 5.39019 5.45101 5.50633 5.60031 5.67262 6.22668 6.28106 6.32811 7.10291 7.34498 8.09529 8.34879 9.30394 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002640 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.725692 B =10603.725518 C =10783.141635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.177 3.823 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.238 4.238 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.294 1.294 13 C 0.093 3.907 14 H 0.035 0.965 15 C 0.093 3.907 16 N -0.608 5.608 17 C 0.551 3.449 18 O -0.575 6.575 19 C -0.162 4.162 20 C -0.119 4.119 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.134 4.134 24 C -0.093 4.093 25 C -0.113 4.113 26 C -0.118 4.118 27 C 0.074 3.926 28 C 0.038 3.962 29 O -0.380 6.380 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.089 0.911 53 H 0.125 0.875 54 H 0.130 0.870 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -3.305 -29.833 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.068 3.932 3 H 0.073 0.927 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.222 1.222 13 C 0.034 3.966 14 H 0.053 0.947 15 C -0.030 4.030 16 N -0.341 5.341 17 C 0.341 3.659 18 O -0.455 6.455 19 C -0.165 4.165 20 C -0.176 4.176 21 C -0.081 4.081 22 C -0.180 4.180 23 C -0.191 4.191 24 C -0.093 4.093 25 C -0.170 4.170 26 C -0.174 4.174 27 C -0.048 4.048 28 C -0.039 4.039 29 O -0.299 6.299 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.107 0.893 53 H 0.143 0.857 54 H 0.148 0.852 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.775 -2.615 -29.537 29.892 hybrid contribution 0.656 0.443 1.574 1.762 sum -3.119 -2.173 -27.963 28.220 Atomic orbital electron populations 1.22196 0.96768 1.01225 1.00442 1.20411 0.93968 0.94340 0.84507 0.92689 1.42529 1.78308 1.10470 1.05960 1.19671 1.34868 0.94167 0.88304 0.90623 1.25557 1.03003 0.96925 1.01442 1.69842 1.52621 1.10227 1.29272 0.85086 0.76743 0.78192 0.79825 1.19046 1.22001 1.22169 1.22431 0.95746 0.83932 0.94536 0.94708 1.22101 1.02058 0.95111 0.83768 1.48182 1.54668 1.13535 1.17681 1.20172 0.75890 0.85998 0.83881 1.90658 1.51461 1.21570 1.81776 1.21731 1.05902 1.00502 0.88319 1.21546 0.98686 0.94230 1.03129 1.21948 0.89341 0.99024 0.97744 1.21602 1.03478 0.93168 0.99721 1.21614 0.95692 0.99685 1.02070 1.21874 0.99377 0.93859 0.94206 1.21372 1.01430 0.93035 1.01121 1.21478 0.97101 1.02240 0.96612 1.22768 1.01765 0.80425 0.99845 1.23213 0.99327 0.96013 0.85395 1.88051 1.67902 1.25535 1.48407 0.91256 0.93386 0.94381 0.79257 0.94112 0.89867 0.89079 0.91871 0.92086 0.87993 0.90640 0.90567 0.90115 0.92874 0.89841 0.92714 0.93668 0.91278 0.93216 0.89554 0.90984 0.92598 0.89279 0.85697 0.85238 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.06 71.98 0.65 -4.76 16 2 C 0.18 7.33 2.77 44.99 0.12 7.46 16 3 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 4 N -0.73 -38.67 5.10 -322.94 -1.65 -40.32 16 5 C -0.24 -13.64 9.93 84.03 0.83 -12.80 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 8 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 9 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 C 0.09 3.32 2.59 30.55 0.08 3.40 16 14 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 15 C 0.09 2.79 5.82 86.21 0.50 3.29 16 16 N -0.61 -15.48 2.86 -818.15 -2.34 -17.82 16 17 C 0.55 14.86 5.49 87.66 0.48 15.34 16 18 O -0.58 -20.13 13.74 -3.01 -0.04 -20.17 16 19 C -0.16 -3.01 1.49 -52.93 -0.08 -3.09 16 20 C -0.12 -1.70 7.59 71.98 0.55 -1.16 16 21 C -0.08 -1.12 2.70 -52.18 -0.14 -1.26 16 22 C -0.12 -0.93 8.12 71.98 0.58 -0.35 16 23 C -0.13 -2.09 8.84 71.98 0.64 -1.46 16 24 C -0.09 -1.58 2.69 -52.19 -0.14 -1.72 16 25 C -0.11 -2.40 7.78 71.98 0.56 -1.84 16 26 C -0.12 -1.40 8.59 71.98 0.62 -0.78 16 27 C 0.07 1.40 5.57 86.35 0.48 1.88 16 28 C 0.04 0.89 6.99 72.08 0.50 1.40 16 29 O -0.38 -12.95 9.24 -148.98 -1.38 -14.32 16 30 H 0.07 2.05 6.42 -2.39 -0.02 2.04 16 31 H 0.05 1.85 7.56 -2.39 -0.02 1.84 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.38 21.56 7.58 -92.70 -0.70 20.86 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.08 2.76 7.07 -2.39 -0.02 2.74 16 36 H 0.09 2.49 6.25 -2.39 -0.01 2.48 16 37 H 0.06 0.96 7.97 -2.39 -0.02 0.94 16 38 H 0.06 0.95 6.16 -2.39 -0.01 0.93 16 39 H 0.10 0.84 5.75 -2.39 -0.01 0.83 16 40 H 0.07 0.44 8.13 -2.39 -0.02 0.42 16 41 H 0.08 0.47 8.02 -2.38 -0.02 0.45 16 42 H 0.08 0.45 4.47 -2.39 -0.01 0.44 16 43 H 0.05 1.02 5.12 -2.39 -0.01 1.01 16 44 H 0.08 0.97 7.93 -2.39 -0.02 0.95 16 45 H 0.05 0.94 7.46 -2.38 -0.02 0.92 16 46 H 0.04 1.18 7.47 -2.38 -0.02 1.16 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.05 1.20 4.74 -2.39 -0.01 1.19 16 49 H 0.09 0.68 4.96 -2.39 -0.01 0.66 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 52 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.13 1.72 4.41 -2.39 -0.01 1.71 16 54 H 0.13 2.36 8.14 -2.39 -0.02 2.35 16 55 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.01 403.22 3.80 -70.21 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.19 Total: 34.20 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.71 Total: -0.54 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -3.71 Total: -118.76 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.42 Total: -34.49 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -74.01 3.80 -70.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506860813.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.718 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds