Wall clock time and date at job start Tue Mar 31 2020 22:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47165 * 2 1 4 4 N 1.46497 * 109.46939 * 240.00433 * 2 1 3 5 5 C 1.34770 * 120.00394 * 84.99668 * 4 2 1 6 6 O 1.21282 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00141 * 180.02562 * 5 4 2 8 8 O 1.42899 * 109.47245 * 180.02562 * 7 5 4 9 9 C 1.42897 * 113.99870 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47256 * 269.99541 * 9 8 7 11 11 C 1.53000 * 109.47643 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46902 * 60.00004 * 11 10 9 13 13 C 1.53006 * 109.47394 * 300.00464 * 12 11 10 14 14 C 1.53003 * 109.46839 * 150.00048 * 9 8 7 15 15 C 1.52993 * 109.47078 * 119.99959 * 2 1 3 16 16 H 1.09005 * 109.50100 * 179.97438 * 15 2 1 17 17 C 1.53040 * 109.50299 * 299.99670 * 15 2 1 18 18 C 1.53034 * 109.54065 * 181.31629 * 17 15 2 19 19 C 1.53196 * 109.31650 * 298.63694 * 18 17 15 20 20 N 1.46920 * 108.77191 * 54.63510 * 19 18 17 21 21 C 1.36938 * 120.63166 * 126.41535 * 20 19 18 22 22 H 1.08000 * 119.99591 * 332.53706 * 21 20 19 23 23 C 1.38810 * 120.00044 * 152.53155 * 21 20 19 24 24 N 1.31618 * 120.00040 * 159.33898 * 23 21 20 25 25 Si 1.86798 * 120.00301 * 339.33849 * 23 21 20 26 26 H 1.48504 * 109.47109 * 92.97475 * 25 23 21 27 27 H 1.48498 * 109.47536 * 212.97827 * 25 23 21 28 28 H 1.48504 * 109.46954 * 332.97815 * 25 23 21 29 29 C 1.46928 * 118.74056 * 306.39161 * 20 19 18 30 30 H 1.09000 * 109.47190 * 59.99816 * 1 2 3 31 31 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46909 * 300.00195 * 1 2 3 33 33 H 0.97005 * 119.99372 * 265.00063 * 4 2 1 34 34 H 1.08998 * 109.47329 * 59.99770 * 7 5 4 35 35 H 1.09000 * 109.46852 * 300.00234 * 7 5 4 36 36 H 1.09001 * 109.47310 * 29.99928 * 9 8 7 37 37 H 1.09001 * 109.47276 * 300.00407 * 10 9 8 38 38 H 1.09006 * 109.47314 * 60.00217 * 10 9 8 39 39 H 1.09001 * 109.47048 * 300.00463 * 11 10 9 40 40 H 1.08994 * 109.47345 * 180.02562 * 11 10 9 41 41 H 1.08995 * 109.47343 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46894 * 60.00365 * 12 11 10 43 43 H 1.09001 * 109.47019 * 299.99824 * 13 12 11 44 44 H 1.08993 * 109.47270 * 179.97438 * 13 12 11 45 45 H 1.08994 * 109.47215 * 299.99683 * 14 9 8 46 46 H 1.09001 * 109.47268 * 59.99854 * 14 9 8 47 47 H 1.09001 * 109.46282 * 301.34446 * 17 15 2 48 48 H 1.09005 * 109.45542 * 61.30692 * 17 15 2 49 49 H 1.09001 * 109.50139 * 58.59082 * 18 17 15 50 50 H 1.09009 * 109.49839 * 178.65571 * 18 17 15 51 51 H 1.08997 * 109.59002 * 174.42263 * 19 18 17 52 52 H 1.09007 * 109.58594 * 294.70770 * 19 18 17 53 53 H 0.96998 * 120.00272 * 179.97438 * 24 23 21 54 54 H 1.09006 * 109.58662 * 293.82205 * 29 20 19 55 55 H 1.08999 * 109.58868 * 173.40013 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0182 -2.3571 6 8 1.8589 1.1587 -2.4115 7 6 2.6487 -0.7287 -3.5878 8 8 2.6974 0.1896 -4.6815 9 6 3.1630 -0.3862 -5.9036 10 6 4.6840 -0.2438 -5.9875 11 6 5.1826 -0.8597 -7.2963 12 6 4.5366 -0.1357 -8.4793 13 6 3.0155 -0.2780 -8.3955 14 6 2.5171 0.3374 -7.0869 15 6 2.0400 -0.7212 1.2492 16 1 3.1300 -0.7219 1.2495 17 6 1.5303 -0.0003 2.4992 18 6 2.0668 -0.7016 3.7491 19 6 1.5535 -2.1447 3.7802 20 7 1.9150 -2.8024 2.5171 21 6 2.6007 -3.9877 2.5190 22 1 3.2532 -4.2327 3.3441 23 6 2.4571 -4.8743 1.4607 24 7 3.3763 -5.7901 1.2400 25 14 0.9593 -4.7678 0.3496 26 1 1.2709 -3.9078 -0.8203 27 1 0.5932 -6.1283 -0.1196 28 1 -0.1771 -4.1825 1.1055 29 6 1.5264 -2.1645 1.2519 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2489 -1.6317 -1.1526 34 1 1.9758 -1.5505 -3.8326 35 1 3.6478 -1.1213 -3.3987 36 1 2.8947 -1.4422 -5.9331 37 1 4.9523 0.8122 -5.9580 38 1 5.1443 -0.7593 -5.1445 39 1 4.9143 -1.9158 -7.3263 40 1 6.2662 -0.7587 -7.3558 41 1 4.8914 -0.5747 -9.4117 42 1 4.8049 0.9203 -8.4493 43 1 2.7472 -1.3341 -8.4254 44 1 2.5553 0.2382 -9.2379 45 1 1.4335 0.2360 -7.0272 46 1 2.7854 1.3935 -7.0574 47 1 1.8739 1.0341 2.4875 48 1 0.4405 -0.0206 2.5111 49 1 3.1565 -0.7036 3.7258 50 1 1.7229 -0.1735 4.6386 51 1 2.0111 -2.6775 4.6137 52 1 0.4697 -2.1446 3.8974 53 1 3.2758 -6.4099 0.5007 54 1 0.4402 -2.1660 1.1604 55 1 1.9661 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566963727.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:59 Heat of formation + Delta-G solvation = -105.690857 kcal Electronic energy + Delta-G solvation = -30922.353555 eV Core-core repulsion = 26957.952770 eV Total energy + Delta-G solvation = -3964.400785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.28701 -40.22143 -39.51051 -37.36350 -36.59580 -34.85691 -33.20884 -32.35853 -31.75460 -31.02089 -29.90699 -28.40393 -27.15461 -25.41885 -24.15995 -23.56164 -23.15867 -22.14905 -21.45679 -20.80073 -20.46761 -18.81917 -18.33146 -18.02675 -17.24412 -17.04859 -16.84454 -16.25429 -16.08204 -15.63998 -15.46523 -15.43322 -15.13560 -15.03017 -14.81110 -14.80091 -14.47473 -14.07360 -13.95931 -13.71104 -13.63237 -13.61578 -13.29016 -13.20360 -13.09251 -12.84333 -12.58611 -12.49638 -12.10140 -12.08318 -12.02361 -11.97097 -11.60826 -11.53615 -11.52936 -11.50869 -11.29458 -11.28790 -11.22521 -10.85773 -10.62782 -10.48441 -10.17373 -8.88464 -8.14575 -5.46140 1.23782 1.43348 1.48538 1.51045 1.75297 2.40986 2.87278 3.05672 3.33254 3.60044 3.74309 3.77158 3.82824 3.87165 3.96896 4.02959 4.08828 4.13226 4.24079 4.26018 4.28632 4.32793 4.33680 4.35867 4.51611 4.52737 4.54975 4.56566 4.64878 4.68914 4.76941 4.87389 4.91233 4.95837 5.00495 5.01070 5.09179 5.10540 5.14052 5.19469 5.20732 5.23356 5.27209 5.28534 5.35667 5.37350 5.45449 5.48499 5.60782 5.88894 6.07291 6.14903 6.41608 6.94062 7.10183 7.64490 8.05363 9.05463 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002829 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.471834 B = 9893.514734 C =11119.172504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.085 0.915 4 N -0.722 5.722 5 C 0.515 3.485 6 O -0.563 6.563 7 C 0.041 3.959 8 O -0.383 6.383 9 C 0.081 3.919 10 C -0.142 4.142 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.102 4.102 16 H 0.063 0.937 17 C -0.101 4.101 18 C -0.126 4.126 19 C 0.138 3.862 20 N -0.620 5.620 21 C -0.249 4.249 22 H 0.048 0.952 23 C -0.034 4.034 24 N -0.956 5.956 25 Si 0.941 3.059 26 H -0.259 1.259 27 H -0.315 1.315 28 H -0.266 1.266 29 C 0.130 3.870 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.050 0.950 52 H 0.036 0.964 53 H 0.262 0.738 54 H 0.039 0.961 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 12.463 -14.967 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.103 0.897 4 N -0.375 5.375 5 C 0.302 3.698 6 O -0.442 6.442 7 C -0.038 4.038 8 O -0.302 6.302 9 C 0.024 3.976 10 C -0.180 4.180 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.123 4.123 16 H 0.082 0.918 17 C -0.138 4.138 18 C -0.165 4.165 19 C 0.014 3.986 20 N -0.344 5.344 21 C -0.378 4.378 22 H 0.066 0.934 23 C -0.228 4.228 24 N -0.602 5.602 25 Si 0.769 3.231 26 H -0.185 1.185 27 H -0.244 1.244 28 H -0.191 1.191 29 C 0.005 3.995 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.069 0.931 52 H 0.054 0.946 53 H 0.071 0.929 54 H 0.056 0.944 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.271 13.379 -15.052 20.267 hybrid contribution -0.092 -1.346 -0.206 1.365 sum -2.363 12.033 -15.259 19.576 Atomic orbital electron populations 1.22246 0.94504 1.02220 1.02982 1.20991 0.94798 0.96539 0.82813 0.89656 1.46223 1.67036 1.14592 1.09648 1.20665 0.77252 0.87035 0.84881 1.90668 1.50887 1.17252 1.85379 1.22332 1.03042 0.92469 0.85963 1.87999 1.87196 1.36526 1.18471 1.22424 0.93989 0.97719 0.83441 1.22046 0.95162 1.01770 0.99004 1.21501 1.00592 0.99967 0.93198 1.21590 0.95035 1.00846 0.98444 1.21498 0.96050 1.01493 0.95916 1.21583 1.00230 1.00161 0.93271 1.21806 1.00380 0.95533 0.94573 0.91830 1.21481 1.01196 0.98790 0.92378 1.21902 1.00268 0.95794 0.98512 1.21160 0.97351 0.92877 0.87226 1.44464 1.66133 1.22132 1.01683 1.18868 1.17838 0.94486 1.06645 0.93392 1.25885 1.00199 0.96322 1.00427 1.69973 1.34799 1.23024 1.32427 0.86016 0.82052 0.75419 0.79577 1.18493 1.24411 1.19124 1.21469 0.97213 0.92441 0.88361 0.93015 0.92681 0.89213 0.75968 0.88297 0.88549 0.90884 0.92101 0.92051 0.91280 0.90957 0.90410 0.92095 0.91156 0.90301 0.91662 0.92048 0.90287 0.90599 0.93329 0.89272 0.93103 0.94645 0.92943 0.94361 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 8.79 71.98 0.63 -3.63 16 2 C 0.15 4.41 2.41 44.99 0.11 4.52 16 3 H 0.09 2.52 7.58 -2.39 -0.02 2.51 16 4 N -0.72 -21.36 5.00 -442.55 -2.21 -23.58 16 5 C 0.51 15.89 7.87 87.66 0.69 16.58 16 6 O -0.56 -21.37 16.16 16.00 0.26 -21.11 16 7 C 0.04 1.02 6.23 71.24 0.44 1.47 16 8 O -0.38 -10.43 9.52 -129.94 -1.24 -11.67 16 9 C 0.08 1.63 2.61 30.59 0.08 1.71 16 10 C -0.14 -2.58 5.54 30.59 0.17 -2.41 16 11 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 12 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 13 C -0.11 -1.42 5.92 30.58 0.18 -1.23 16 14 C -0.11 -2.03 5.57 30.58 0.17 -1.86 16 15 C -0.10 -3.19 2.33 -10.72 -0.02 -3.22 16 16 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 17 C -0.10 -2.62 4.78 30.62 0.15 -2.47 16 18 C -0.13 -3.59 6.08 30.67 0.19 -3.40 16 19 C 0.14 5.04 6.52 86.36 0.56 5.60 16 20 N -0.62 -27.68 2.77 -699.09 -1.94 -29.61 16 21 C -0.25 -13.66 10.03 84.03 0.84 -12.82 16 22 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 23 C -0.03 -1.89 5.23 84.86 0.44 -1.44 16 24 N -0.96 -58.01 13.97 21.65 0.30 -57.71 16 25 Si 0.94 43.62 24.35 68.60 1.67 45.29 16 26 H -0.26 -10.48 6.62 99.48 0.66 -9.82 16 27 H -0.31 -15.16 7.11 99.48 0.71 -14.46 16 28 H -0.27 -12.06 6.64 99.48 0.66 -11.40 16 29 C 0.13 5.01 2.98 86.36 0.26 5.27 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.53 6.32 -2.39 -0.02 1.51 16 32 H 0.09 1.99 6.46 -2.39 -0.02 1.97 16 33 H 0.40 11.95 6.98 -92.70 -0.65 11.30 16 34 H 0.10 2.02 8.09 -2.39 -0.02 2.01 16 35 H 0.10 2.04 7.87 -2.39 -0.02 2.02 16 36 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.14 7.87 -2.38 -0.02 1.12 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 1.81 6.50 -2.38 -0.02 1.79 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 51 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 52 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 54 H 0.04 1.45 5.11 -2.38 -0.01 1.44 16 55 H 0.05 2.06 3.10 -2.39 -0.01 2.05 16 Total: -1.00 -69.91 406.94 2.21 -67.70 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.12 Total: 30.72 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.25 Total: -0.03 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.84 Total: -110.89 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.98 Total: -32.78 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.67 Total: 45.29 kcal Total: -69.91 2.21 -67.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566963727.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.996 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds