Wall clock time and date at job start Tue Mar 31 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 N 1.46501 * 109.47174 * 240.00267 * 2 1 3 5 5 C 1.34778 * 120.00159 * 84.99822 * 4 2 1 6 6 O 1.21280 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00245 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47385 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47045 * 179.97438 * 8 7 5 10 10 C 1.53172 * 109.54568 * 294.55775 * 9 8 7 11 11 C 1.53098 * 109.16399 * 183.15421 * 10 9 8 12 12 O 1.42903 * 109.41487 * 57.60927 * 11 10 9 13 13 C 1.42908 * 114.09770 * 298.84275 * 12 11 10 14 14 C 1.53090 * 109.41457 * 61.15949 * 13 12 11 15 15 C 1.53000 * 109.47530 * 119.99897 * 2 1 3 16 16 H 1.09002 * 109.49463 * 59.94117 * 15 2 1 17 17 C 1.53042 * 109.49466 * 299.83995 * 15 2 1 18 18 C 1.53040 * 109.53399 * 178.68321 * 17 15 2 19 19 C 1.52757 * 109.38837 * 61.23930 * 18 17 15 20 20 N 1.46933 * 109.00863 * 305.59166 * 19 18 17 21 21 C 1.36935 * 120.62781 * 233.58305 * 20 19 18 22 22 H 1.07995 * 119.99873 * 152.09995 * 21 20 19 23 23 C 1.38811 * 119.99806 * 332.09376 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46923 * 118.73785 * 53.30252 * 20 19 18 30 30 H 1.08997 * 109.47311 * 299.99306 * 1 2 3 31 31 H 1.08994 * 109.47288 * 60.00314 * 1 2 3 32 32 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99853 * 264.99643 * 4 2 1 34 34 H 1.09005 * 109.46949 * 300.00004 * 7 5 4 35 35 H 1.09007 * 109.46731 * 59.99353 * 7 5 4 36 36 H 1.08996 * 109.47156 * 299.99907 * 8 7 5 37 37 H 1.09008 * 109.47012 * 59.99788 * 8 7 5 38 38 H 1.08996 * 109.54138 * 54.82797 * 9 8 7 39 39 H 1.09002 * 109.52060 * 303.05881 * 10 9 8 40 40 H 1.08998 * 109.52584 * 63.24836 * 10 9 8 41 41 H 1.09000 * 109.47802 * 297.62403 * 11 10 9 42 42 H 1.08998 * 109.48204 * 177.59384 * 11 10 9 43 43 H 1.09002 * 109.48149 * 301.17976 * 13 12 11 44 44 H 1.09000 * 109.48992 * 181.14755 * 13 12 11 45 45 H 1.09006 * 109.52537 * 182.49015 * 14 13 12 46 46 H 1.08992 * 109.57959 * 62.32685 * 14 13 12 47 47 H 1.08990 * 109.46013 * 298.70087 * 17 15 2 48 48 H 1.09000 * 109.45871 * 58.66279 * 17 15 2 49 49 H 1.09003 * 109.50007 * 181.32125 * 18 17 15 50 50 H 1.09008 * 109.49676 * 301.38120 * 18 17 15 51 51 H 1.08994 * 109.51278 * 185.70471 * 19 18 17 52 52 H 1.09000 * 109.43033 * 65.42089 * 19 18 17 53 53 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 54 54 H 1.09006 * 109.58528 * 66.43409 * 29 20 19 55 55 H 1.09001 * 109.58720 * 186.85700 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1584 -2.4118 7 6 2.6488 -0.7287 -3.5878 8 6 2.6998 0.2543 -4.7591 9 6 3.2098 -0.4669 -6.0083 10 6 4.6632 -0.8997 -5.7926 11 6 5.1896 -1.5498 -7.0749 12 8 5.0711 -0.6262 -8.1589 13 6 3.7288 -0.2226 -8.4375 14 6 3.1438 0.4808 -7.2100 15 6 2.0401 -0.7212 1.2492 16 1 1.6761 -1.7487 1.2502 17 6 1.5336 0.0022 2.4992 18 6 2.0160 -0.7374 3.7492 19 6 3.5433 -0.7416 3.7781 20 7 4.0443 -1.3003 2.5149 21 6 4.9302 -2.3445 2.5166 22 1 4.9568 -3.0315 1.6838 23 6 5.7941 -2.5200 3.5889 24 7 6.1264 -1.4925 4.3414 25 14 6.4788 -4.2159 3.9688 26 1 7.2513 -4.7108 2.8011 27 1 7.3696 -4.1360 5.1543 28 1 5.3595 -5.1494 4.2534 29 6 3.5720 -0.7215 1.2498 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.6480 -1.1212 -3.3987 35 1 1.9759 -1.5505 -3.8326 36 1 1.7005 0.6464 -4.9481 37 1 3.3725 1.0765 -4.5145 38 1 2.5916 -1.3437 -6.2011 39 1 5.2708 -0.0278 -5.5504 40 1 4.7119 -1.6176 -4.9739 41 1 4.6071 -2.4446 -7.2944 42 1 6.2367 -1.8213 -6.9415 43 1 3.1272 -1.1000 -8.6747 44 1 3.7235 0.4620 -9.2857 45 1 2.1057 0.7503 -7.4048 46 1 3.7197 1.3811 -6.9959 47 1 1.9182 1.0219 2.5095 48 1 0.4439 0.0253 2.4888 49 1 1.6355 -0.2352 4.6386 50 1 1.6518 -1.7646 3.7275 51 1 3.8900 -1.3530 4.6111 52 1 3.9066 0.2794 3.8955 53 1 5.8390 -0.5989 4.0964 54 1 3.9376 0.3012 1.1568 55 1 3.9376 -1.3197 0.4152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566966087.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:41 Heat of formation + Delta-G solvation = -121.275482 kcal Electronic energy + Delta-G solvation = -30402.277544 eV Core-core repulsion = 26437.200959 eV Total energy + Delta-G solvation = -3965.076585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.16296 -40.32783 -39.55679 -37.02119 -36.27723 -34.83003 -32.87348 -32.32195 -32.03963 -31.54428 -29.85045 -27.25681 -26.81443 -24.86576 -24.46570 -23.82062 -23.16012 -21.81976 -21.40753 -20.91684 -20.56218 -19.37927 -18.08512 -17.21352 -17.00345 -16.90834 -16.58940 -16.24974 -16.12786 -15.72984 -15.50697 -15.45148 -15.29652 -15.06884 -14.94830 -14.67696 -14.30572 -14.10648 -13.94793 -13.79745 -13.46800 -13.20921 -13.14811 -12.94055 -12.86349 -12.65208 -12.59430 -12.33293 -12.26191 -12.14473 -11.94119 -11.89139 -11.75648 -11.72250 -11.64702 -11.40514 -11.26251 -11.16777 -11.11551 -10.77979 -10.46811 -10.42004 -10.04561 -8.94040 -8.24312 -5.40629 1.58513 1.66175 1.68571 1.84594 2.24387 2.65843 3.00677 3.20748 3.44468 3.65825 3.70576 3.78260 3.81586 3.92974 3.96072 4.04098 4.09527 4.21028 4.24839 4.28491 4.36323 4.38966 4.42676 4.51167 4.51550 4.61135 4.64035 4.68783 4.73065 4.78423 4.79925 4.82402 4.85403 4.89357 4.93670 4.94740 5.00893 5.06522 5.12134 5.15846 5.17710 5.19846 5.22159 5.25679 5.30470 5.37945 5.48417 5.52120 5.59742 5.82730 6.30161 6.37756 6.59359 7.04968 7.29474 7.77596 8.22992 8.99825 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.002500 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.068810 B =11198.786651 C =13255.508427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 H 0.059 0.941 4 N -0.717 5.717 5 C 0.508 3.492 6 O -0.589 6.589 7 C -0.136 4.136 8 C -0.090 4.090 9 C -0.084 4.084 10 C -0.155 4.155 11 C 0.057 3.943 12 O -0.410 6.410 13 C 0.058 3.942 14 C -0.151 4.151 15 C -0.093 4.093 16 H 0.078 0.922 17 C -0.099 4.099 18 C -0.125 4.125 19 C 0.152 3.848 20 N -0.616 5.616 21 C -0.352 4.352 22 H 0.056 0.944 23 C -0.079 4.079 24 N -0.945 5.945 25 Si 1.115 2.885 26 H -0.274 1.274 27 H -0.296 1.296 28 H -0.277 1.277 29 C 0.159 3.841 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.057 0.943 51 H 0.043 0.957 52 H -0.005 1.005 53 H 0.252 0.748 54 H -0.007 1.007 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -1.721 -21.091 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.077 0.923 4 N -0.368 5.368 5 C 0.296 3.704 6 O -0.469 6.469 7 C -0.175 4.175 8 C -0.128 4.128 9 C -0.102 4.102 10 C -0.192 4.192 11 C -0.020 4.020 12 O -0.329 6.329 13 C -0.019 4.019 14 C -0.189 4.189 15 C -0.113 4.113 16 H 0.097 0.903 17 C -0.137 4.137 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.341 5.341 21 C -0.482 4.482 22 H 0.074 0.926 23 C -0.275 4.275 24 N -0.587 5.587 25 Si 0.939 3.061 26 H -0.200 1.200 27 H -0.222 1.222 28 H -0.204 1.204 29 C 0.033 3.967 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.061 0.939 52 H 0.013 0.987 53 H 0.061 0.939 54 H 0.011 0.989 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.187 -1.705 -20.175 23.132 hybrid contribution -0.458 0.986 -0.465 1.182 sum -11.645 -0.719 -20.640 23.709 Atomic orbital electron populations 1.22106 0.93641 1.02867 1.02328 1.20812 0.94904 0.95885 0.83501 0.92294 1.46127 1.66765 1.14638 1.09318 1.21353 0.76474 0.86977 0.85589 1.90665 1.52273 1.18074 1.85902 1.21778 1.04323 1.00116 0.91291 1.21261 1.01476 0.97088 0.92947 1.21198 0.96251 0.98814 0.93926 1.22326 0.96316 1.01632 0.98966 1.22704 1.02385 0.91338 0.85526 1.87904 1.28337 1.64255 1.52453 1.22709 0.82768 0.99181 0.97218 1.22235 1.02297 0.98896 0.95433 1.21724 0.95729 0.99971 0.93901 0.90331 1.21456 1.01154 0.98038 0.93031 1.21846 0.95574 1.00550 0.98448 1.20767 0.93153 0.94521 0.88967 1.44362 1.50167 1.38625 1.00917 1.20240 1.14428 1.04380 1.09144 0.92632 1.27232 0.95810 1.07211 0.97261 1.70905 1.44758 0.99355 1.43692 0.82860 0.75837 0.71260 0.76109 1.19968 1.22193 1.20356 1.20939 0.93057 0.94462 0.88230 0.90387 0.93303 0.91136 0.75317 0.87593 0.86055 0.91854 0.93537 0.89166 0.92628 0.89402 0.91748 0.88567 0.91862 0.88205 0.89672 0.92489 0.93226 0.89152 0.90800 0.92384 0.93855 0.98675 0.93865 0.98884 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.14 71.98 0.66 -2.67 16 2 C 0.15 4.14 2.16 44.99 0.10 4.24 16 3 H 0.06 1.91 7.58 -2.38 -0.02 1.90 16 4 N -0.72 -17.03 4.48 -442.53 -1.98 -19.01 16 5 C 0.51 12.79 7.79 87.66 0.68 13.48 16 6 O -0.59 -19.81 15.65 -3.03 -0.05 -19.86 16 7 C -0.14 -2.25 5.46 29.85 0.16 -2.08 16 8 C -0.09 -1.61 3.98 30.59 0.12 -1.48 16 9 C -0.08 -1.14 2.27 -10.67 -0.02 -1.16 16 10 C -0.15 -2.26 5.10 30.68 0.16 -2.11 16 11 C 0.06 0.81 6.84 72.01 0.49 1.31 16 12 O -0.41 -7.61 10.77 -148.98 -1.60 -9.21 16 13 C 0.06 0.77 6.84 72.01 0.49 1.26 16 14 C -0.15 -2.10 5.42 30.69 0.17 -1.93 16 15 C -0.09 -2.84 1.97 -10.72 -0.02 -2.86 16 16 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.10 -2.96 4.86 30.62 0.15 -2.81 16 18 C -0.13 -4.43 6.06 30.53 0.19 -4.24 16 19 C 0.15 7.18 4.66 86.22 0.40 7.58 16 20 N -0.62 -30.55 2.86 -699.93 -2.00 -32.55 16 21 C -0.35 -19.34 9.49 84.03 0.80 -18.54 16 22 H 0.06 2.98 7.94 -2.91 -0.02 2.96 16 23 C -0.08 -4.48 4.69 84.86 0.40 -4.08 16 24 N -0.94 -58.09 12.40 21.65 0.27 -57.82 16 25 Si 1.11 50.12 29.99 68.60 2.06 52.17 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 28 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 29 C 0.16 6.45 5.56 86.36 0.48 6.93 16 30 H 0.08 1.55 6.40 -2.39 -0.02 1.54 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.41 8.10 8.42 -92.71 -0.78 7.32 16 34 H 0.11 1.57 6.66 -2.38 -0.02 1.55 16 35 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.08 6.75 -2.39 -0.02 1.06 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.09 2.12 6.36 -2.39 -0.02 2.10 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 51 H 0.04 2.33 6.30 -2.39 -0.02 2.32 16 52 H 0.00 -0.24 7.87 -2.39 -0.02 -0.26 16 53 H 0.25 15.91 6.71 -92.70 -0.62 15.29 16 54 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 55 H 0.05 2.11 7.44 -2.39 -0.02 2.10 16 Total: -1.00 -73.03 414.66 2.31 -70.73 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.21 Total: 24.73 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.40 Total: -9.18 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.71 Total: -109.38 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.65 Total: -29.07 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.06 Total: 52.17 kcal Total: -73.03 2.31 -70.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566966087.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.549 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds