Wall clock time and date at job start Tue Mar 31 2020 23:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46894 * 2 1 4 4 O 1.42897 * 109.47180 * 239.99998 * 2 1 3 5 5 C 1.42903 * 114.00023 * 89.99674 * 4 2 1 6 6 C 1.50474 * 109.62774 * 90.38769 * 5 4 2 7 7 C 1.54268 * 112.38918 * 213.74135 * 6 5 4 8 8 C 1.54064 * 112.94777 * 318.57817 * 7 6 5 9 9 C 1.50478 * 112.49713 * 318.16992 * 8 7 6 10 10 C 1.54245 * 108.52168 * 94.14776 * 9 8 7 11 11 C 1.45532 * 112.40824 * 280.01392 * 10 9 8 12 12 C 1.50699 * 109.47190 * 119.99626 * 2 1 3 13 13 O 1.21280 * 119.99511 * 120.00217 * 12 2 1 14 14 N 1.34774 * 120.00305 * 299.99982 * 12 2 1 15 15 C 1.46498 * 120.00101 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.46929 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.64281 * 54.30150 * 16 15 14 18 18 C 1.55159 * 110.71870 * 177.43889 * 16 15 14 19 19 C 1.55117 * 101.48575 * 153.73433 * 18 16 15 20 20 N 1.47426 * 104.94304 * 323.22454 * 19 18 16 21 21 C 1.36936 * 125.64664 * 203.97008 * 20 19 18 22 22 H 1.07999 * 119.99709 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00143 * 0.03768 * 21 20 19 24 24 N 1.31615 * 120.00016 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47471 * 59.99965 * 25 23 21 27 27 H 1.48501 * 109.47118 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47232 * 299.99608 * 25 23 21 29 29 C 1.47019 * 108.70355 * 24.00117 * 20 19 18 30 30 H 1.09003 * 109.47095 * 60.00246 * 1 2 3 31 31 H 1.09001 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47153 * 300.00039 * 1 2 3 33 33 H 1.09002 * 109.62705 * 330.00047 * 5 4 2 34 34 H 1.08996 * 108.87961 * 334.83716 * 6 5 4 35 35 H 1.08995 * 108.87705 * 93.27688 * 6 5 4 36 36 H 1.09001 * 108.83427 * 197.61629 * 7 6 5 37 37 H 1.08996 * 108.65089 * 79.41336 * 7 6 5 38 38 H 1.08991 * 108.87873 * 197.39374 * 8 7 6 39 39 H 1.09003 * 108.87804 * 78.94713 * 8 7 6 40 40 H 1.08992 * 109.63039 * 334.43975 * 9 8 7 41 41 H 1.09000 * 109.62697 * 213.85998 * 9 8 7 42 42 H 1.09002 * 108.89218 * 159.25671 * 10 9 8 43 43 H 1.09000 * 108.89510 * 40.77574 * 10 9 8 44 44 H 1.09005 * 108.89581 * 301.18197 * 11 10 9 45 45 H 1.09004 * 108.89612 * 182.69517 * 11 10 9 46 46 H 0.97005 * 119.99906 * 0.02562 * 14 12 2 47 47 H 1.09003 * 109.46714 * 299.99843 * 15 14 12 48 48 H 1.08993 * 109.47256 * 60.00332 * 15 14 12 49 49 H 1.09004 * 111.00136 * 271.94103 * 18 16 15 50 50 H 1.09001 * 111.00229 * 35.78718 * 18 16 15 51 51 H 1.08998 * 110.41958 * 204.29619 * 19 18 16 52 52 H 1.09002 * 110.30350 * 82.09078 * 19 18 16 53 53 H 0.96999 * 119.99937 * 180.02562 * 24 23 21 54 54 H 1.09001 * 109.88412 * 239.52181 * 29 20 19 55 55 H 1.09001 * 110.01262 * 118.43260 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2000 0.1829 -2.2941 6 6 3.6077 0.7147 -2.2889 7 6 3.6961 2.1488 -2.8504 8 6 2.8131 2.3622 -4.0948 9 6 2.8726 1.2003 -5.0491 10 6 1.7012 0.2474 -4.7344 11 6 1.9781 -0.6149 -3.5953 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.1957 -0.9401 3.6507 16 6 1.6850 -0.2192 4.9000 17 1 0.5999 -0.1203 4.8700 18 6 2.1331 -0.9640 6.1852 19 6 2.1496 0.1903 7.2213 20 7 2.6353 1.3648 6.4742 21 6 3.2455 2.4620 7.0210 22 1 3.5660 3.2743 6.3855 23 6 3.4522 2.5301 8.3920 24 7 3.0622 1.5399 9.1663 25 14 4.2839 4.0272 9.1378 26 1 3.4831 5.2406 8.8350 27 1 4.3857 3.8552 10.6093 28 1 5.6446 4.1758 8.5621 29 6 2.3555 1.1632 5.0450 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4949 1.0129 -2.2487 34 1 3.9840 0.7067 -1.2660 35 1 4.2334 0.0622 -2.8978 36 1 4.7324 2.3602 -3.1143 37 1 3.3839 2.8471 -2.0739 38 1 3.1456 3.2615 -4.6131 39 1 1.7808 2.5033 -3.7747 40 1 3.8178 0.6721 -4.9245 41 1 2.7847 1.5628 -6.0733 42 1 1.5071 -0.3740 -5.6087 43 1 0.8117 0.8401 -4.5206 44 1 2.8720 -1.2021 -3.8061 45 1 1.1373 -1.2940 -3.4539 46 1 1.1488 0.5386 2.5436 47 1 1.8327 -1.9679 3.6509 48 1 3.2856 -0.9396 3.6506 49 1 1.4114 -1.7321 6.4633 50 1 3.1282 -1.3914 6.0623 51 1 2.8278 -0.0446 8.0416 52 1 1.1442 0.3718 7.6014 53 1 3.2063 1.5876 10.1243 54 1 3.2863 1.1851 4.4783 55 1 1.6831 1.9411 4.6832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567409664.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:46 Heat of formation + Delta-G solvation = -100.447746 kcal Electronic energy + Delta-G solvation = -30208.210293 eV Core-core repulsion = 26244.036866 eV Total energy + Delta-G solvation = -3964.173427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.24839 -40.22715 -39.24178 -37.70902 -36.06704 -34.41933 -33.42935 -33.07217 -31.71056 -31.07478 -29.71404 -27.38008 -26.08330 -25.58946 -25.26152 -24.10823 -22.20275 -21.69552 -21.36667 -20.92624 -20.29073 -18.91306 -18.35558 -18.19214 -17.12175 -16.93383 -16.65172 -16.36760 -15.91686 -15.83201 -15.61285 -15.36292 -15.12400 -14.83513 -14.50254 -14.27354 -14.17837 -14.04071 -13.80534 -13.54379 -13.44923 -13.32744 -13.25236 -13.11375 -13.00160 -12.82075 -12.64652 -12.48723 -12.13992 -12.05788 -11.88339 -11.85828 -11.81892 -11.60320 -11.57790 -11.36435 -11.34421 -11.31637 -11.03671 -10.84734 -10.72914 -10.43280 -10.12242 -8.87538 -7.77031 -5.21173 1.46358 1.49458 1.55777 1.56109 1.84772 2.49789 2.85133 3.32283 3.57851 3.65404 3.70519 3.74137 3.82134 3.93393 3.98991 4.03119 4.05991 4.07143 4.17244 4.24134 4.27762 4.38648 4.45366 4.46179 4.51912 4.62766 4.65419 4.69475 4.77294 4.82801 4.87685 4.91443 4.99358 5.03539 5.05437 5.06189 5.13273 5.19545 5.23197 5.27692 5.32525 5.33448 5.34281 5.36881 5.42149 5.45647 5.48309 5.56119 5.66521 5.83504 6.19348 6.32541 6.55134 7.11562 7.20674 7.79738 8.43152 9.24614 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002078 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.948309 B =13473.874980 C =14659.712565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.380 6.380 5 C 0.090 3.910 6 C -0.142 4.142 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.113 4.113 11 C -0.109 4.109 12 C 0.508 3.492 13 O -0.575 6.575 14 N -0.711 5.711 15 C 0.145 3.855 16 C -0.092 4.092 17 H 0.100 0.900 18 C -0.124 4.124 19 C 0.152 3.848 20 N -0.628 5.628 21 C -0.239 4.239 22 H 0.080 0.920 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.980 3.020 26 H -0.276 1.276 27 H -0.294 1.294 28 H -0.279 1.279 29 C 0.137 3.863 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.415 0.585 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.070 0.930 52 H -0.008 1.008 53 H 0.247 0.753 54 H 0.018 0.982 55 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -0.357 -28.765 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.299 6.299 5 C 0.033 3.967 6 C -0.180 4.180 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.158 4.158 10 C -0.150 4.150 11 C -0.147 4.147 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.365 5.365 15 C 0.021 3.979 16 C -0.111 4.111 17 H 0.118 0.882 18 C -0.163 4.163 19 C 0.027 3.973 20 N -0.354 5.354 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.598 5.598 25 Si 0.808 3.192 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.205 1.205 29 C 0.012 3.988 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.252 0.748 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.010 0.990 53 H 0.056 0.944 54 H 0.036 0.964 55 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.551 -1.173 -28.671 29.433 hybrid contribution 0.533 1.117 1.111 1.663 sum -6.018 -0.055 -27.560 28.209 Atomic orbital electron populations 1.22252 0.91322 1.03634 1.04985 1.21994 0.96475 0.96387 0.83959 0.87674 1.88051 1.86564 1.35683 1.19592 1.22072 0.96298 0.92788 0.85592 1.21948 0.97525 0.97735 1.00820 1.21903 1.00689 0.94710 0.97822 1.21378 1.00301 0.98754 0.95290 1.21393 0.98539 0.96395 0.99492 1.20430 0.98883 0.98383 0.97352 1.20470 1.02531 0.98759 0.92922 1.21032 0.79658 0.84433 0.85375 1.90693 1.39231 1.28159 1.87283 1.45879 1.53497 1.32446 1.04667 1.21194 0.98298 0.96042 0.82408 1.22282 1.00893 0.94430 0.93526 0.88182 1.22890 1.01193 0.97625 0.94575 1.21764 0.96211 0.84865 0.94472 1.44809 1.69120 1.18942 1.02577 1.19410 1.30203 0.95977 0.91259 0.90215 1.25645 1.02626 1.01304 0.96587 1.70046 1.53402 1.32781 1.03613 0.85128 0.78437 0.78848 0.76774 1.20238 1.22003 1.20504 1.21507 0.96596 0.95328 0.85332 0.89345 0.92264 0.89022 0.90018 0.93422 0.92054 0.91934 0.91926 0.91332 0.91468 0.92275 0.90701 0.90819 0.91091 0.92515 0.91567 0.74818 0.90823 0.93222 0.89150 0.92167 0.91210 0.99013 0.94356 0.96352 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.42 71.98 0.68 -1.54 16 2 C 0.07 1.44 2.85 29.85 0.09 1.52 16 3 H 0.11 1.63 7.80 -2.38 -0.02 1.61 16 4 O -0.38 -9.00 9.07 -129.94 -1.18 -10.18 16 5 C 0.09 1.50 2.06 30.20 0.06 1.56 16 6 C -0.14 -2.49 5.07 30.21 0.15 -2.34 16 7 C -0.11 -1.47 5.85 31.38 0.18 -1.29 16 8 C -0.12 -1.17 5.31 30.14 0.16 -1.01 16 9 C -0.12 -1.17 5.61 30.20 0.17 -1.00 16 10 C -0.11 -1.12 5.26 28.74 0.15 -0.97 16 11 C -0.11 -1.60 4.94 28.73 0.14 -1.45 16 12 C 0.51 13.85 7.23 87.66 0.63 14.49 16 13 O -0.57 -21.55 16.50 16.01 0.26 -21.28 16 14 N -0.71 -16.76 5.32 -463.07 -2.46 -19.23 16 15 C 0.14 4.05 5.00 86.38 0.43 4.48 16 16 C -0.09 -2.83 2.98 -9.60 -0.03 -2.86 16 17 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 18 C -0.12 -4.43 6.55 32.06 0.21 -4.22 16 19 C 0.15 7.39 5.89 86.93 0.51 7.90 16 20 N -0.63 -32.00 3.40 -691.58 -2.35 -34.35 16 21 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 23 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 24 N -0.95 -56.60 10.09 21.65 0.22 -56.38 16 25 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 C 0.14 5.34 6.64 86.73 0.58 5.91 16 30 H 0.09 0.86 7.97 -2.39 -0.02 0.84 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.89 7.56 -2.39 -0.02 0.87 16 33 H 0.08 1.05 6.48 -2.39 -0.02 1.04 16 34 H 0.05 1.04 7.89 -2.39 -0.02 1.02 16 35 H 0.06 1.13 6.65 -2.39 -0.02 1.12 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.59 6.63 -2.39 -0.02 0.57 16 40 H 0.06 0.69 6.99 -2.39 -0.02 0.67 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.59 7.47 -2.39 -0.02 0.58 16 44 H 0.06 0.94 7.48 -2.38 -0.02 0.92 16 45 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 46 H 0.41 7.38 7.82 -92.70 -0.72 6.65 16 47 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 48 H 0.05 1.62 8.01 -2.39 -0.02 1.60 16 49 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 50 H 0.06 2.19 8.05 -2.39 -0.02 2.18 16 51 H 0.07 3.93 5.87 -2.39 -0.01 3.91 16 52 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 53 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 54 H 0.02 0.74 7.73 -2.39 -0.02 0.72 16 55 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.86 415.91 2.09 -71.77 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.12 Total: 18.82 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.45 Total: 3.20 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.60 Total: -109.96 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.92 Total: -31.46 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.86 2.09 -71.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567409664.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.679 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds