Wall clock time and date at job start Tue Mar 31 2020 22:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00199 * 2 1 4 4 C 1.52997 * 109.47519 * 179.97438 * 3 2 1 5 5 C 1.50702 * 110.43170 * 300.69989 * 4 3 2 6 6 O 1.21282 * 119.99504 * 239.29846 * 5 4 3 7 7 N 1.34772 * 120.00182 * 59.29518 * 5 4 3 8 8 C 1.46501 * 119.99741 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47523 * 35.00641 * 8 7 5 10 10 C 1.52995 * 109.47424 * 275.00092 * 8 7 5 11 11 C 1.53007 * 109.47023 * 155.00609 * 8 7 5 12 12 H 1.09008 * 109.49242 * 304.93889 * 11 8 7 13 13 C 1.53036 * 109.49894 * 184.84148 * 11 8 7 14 14 C 1.53042 * 109.53655 * 178.67957 * 13 11 8 15 15 C 1.53190 * 109.31210 * 61.36647 * 14 13 11 16 16 N 1.46926 * 108.77597 * 305.36202 * 15 14 13 17 17 C 1.36938 * 120.63233 * 233.59245 * 16 15 14 18 18 H 1.07998 * 120.00157 * 151.84783 * 17 16 15 19 19 C 1.38819 * 119.99739 * 331.83818 * 17 16 15 20 20 N 1.31610 * 120.00165 * 343.07641 * 19 17 16 21 21 Si 1.86803 * 119.99583 * 163.06951 * 19 17 16 22 22 H 1.48500 * 109.46933 * 90.00679 * 21 19 17 23 23 H 1.48497 * 109.46969 * 210.00268 * 21 19 17 24 24 H 1.48501 * 109.47405 * 330.00468 * 21 19 17 25 25 C 1.46930 * 118.73914 * 53.60566 * 16 15 14 26 26 C 1.54889 * 110.48721 * 63.23545 * 4 3 2 27 27 C 1.55241 * 102.58757 * 156.67786 * 26 4 3 28 28 C 1.54273 * 104.23105 * 322.08739 * 27 26 4 29 29 C 1.53879 * 106.59592 * 23.60734 * 28 27 26 30 30 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47567 * 300.00594 * 1 2 3 32 32 H 1.09004 * 109.47141 * 60.00384 * 1 2 3 33 33 H 1.09000 * 109.47348 * 59.99262 * 3 2 1 34 34 H 1.09006 * 109.46723 * 299.99653 * 3 2 1 35 35 H 0.97001 * 120.00240 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.47559 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.47311 * 300.00187 * 10 8 7 38 38 H 1.08995 * 109.47043 * 60.00263 * 10 8 7 39 39 H 1.09003 * 109.45645 * 298.69922 * 13 11 8 40 40 H 1.08997 * 109.46330 * 58.65764 * 13 11 8 41 41 H 1.08996 * 109.50065 * 301.40992 * 14 13 11 42 42 H 1.09008 * 109.52067 * 181.32835 * 14 13 11 43 43 H 1.08997 * 109.58796 * 185.57784 * 15 14 13 44 44 H 1.09005 * 109.59290 * 65.14711 * 15 14 13 45 45 H 0.96995 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.58460 * 186.60388 * 25 16 15 47 47 H 1.09005 * 109.58350 * 66.18478 * 25 16 15 48 48 H 1.08997 * 110.75803 * 275.06965 * 26 4 3 49 49 H 1.09005 * 110.75621 * 38.44327 * 26 4 3 50 50 H 1.09003 * 110.46890 * 203.39665 * 27 26 4 51 51 H 1.09000 * 110.58360 * 80.83020 * 27 26 4 52 52 H 1.08994 * 110.02977 * 264.32456 * 28 27 26 53 53 H 1.08993 * 110.07013 * 142.91486 * 28 27 26 54 54 H 1.09002 * 110.03122 * 240.71031 * 29 28 27 55 55 H 1.09002 * 110.06646 * 119.30613 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0025 0.4247 1.2153 6 8 4.7601 0.9487 2.0042 7 7 3.5782 -0.8372 1.4249 8 6 4.0328 -1.5762 2.6054 9 1 4.1420 -0.8891 3.4444 10 6 5.3809 -2.2351 2.3069 11 6 3.0058 -2.6538 2.9591 12 1 2.0255 -2.1944 3.0861 13 6 3.4188 -3.3456 4.2602 14 6 2.3750 -4.4012 4.6323 15 6 2.3050 -5.4570 3.5245 16 7 2.0514 -4.7827 2.2440 17 6 1.0042 -5.1658 1.4491 18 1 0.5375 -4.4501 0.7886 19 6 0.5426 -6.4743 1.4922 20 7 1.2902 -7.4187 2.0225 21 14 -1.1399 -6.8945 0.7977 22 1 -1.0077 -7.2510 -0.6378 23 1 -1.7097 -8.0454 1.5431 24 1 -2.0395 -5.7210 0.9355 25 6 2.9428 -3.6897 1.8323 26 6 4.0248 0.4904 -1.2945 27 6 5.4904 0.9884 -1.4123 28 6 5.4307 2.4571 -0.9442 29 6 4.1876 2.5819 -0.0458 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 2.9726 -1.2565 0.7938 36 1 5.7189 -2.7853 3.1850 37 1 5.2717 -2.9222 1.4679 38 1 6.1126 -1.4674 2.0549 39 1 4.3881 -3.8254 4.1245 40 1 3.4883 -2.6065 5.0583 41 1 1.4006 -3.9258 4.7439 42 1 2.6573 -4.8774 5.5713 43 1 1.4956 -6.1556 3.7361 44 1 3.2513 -5.9956 3.4726 45 1 0.9675 -8.3329 2.0530 46 1 2.5542 -3.2224 0.9275 47 1 3.9411 -4.0842 1.6424 48 1 3.9899 -0.5939 -1.1884 49 1 3.4363 0.8147 -2.1528 50 1 5.8306 0.9310 -2.4463 51 1 6.1458 0.4075 -0.7633 52 1 5.3376 3.1197 -1.8046 53 1 6.3277 2.7057 -0.3771 54 1 3.4913 3.3052 -0.4703 55 1 4.4808 2.8906 0.9576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661989433.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:28 Heat of formation + Delta-G solvation = -100.999306 kcal Electronic energy + Delta-G solvation = -32439.139294 eV Core-core repulsion = 28474.941950 eV Total energy + Delta-G solvation = -3964.197344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.67714 -39.91189 -38.71394 -37.76959 -36.52475 -34.63515 -32.71785 -32.26210 -31.42198 -29.64872 -29.37106 -27.56192 -27.20253 -25.62863 -25.12222 -23.96180 -23.39380 -21.85455 -21.25472 -20.44974 -19.85497 -18.64890 -18.03901 -17.32353 -17.11336 -16.82213 -16.58945 -16.39296 -16.00778 -15.97645 -15.61762 -15.30084 -15.13897 -15.01714 -14.68691 -14.26717 -14.19294 -13.97343 -13.92994 -13.61719 -13.34073 -13.25416 -13.03510 -12.76195 -12.67426 -12.49130 -12.35904 -12.27972 -12.20408 -12.04010 -12.00386 -11.96776 -11.92916 -11.70473 -11.63877 -11.49488 -11.32713 -11.21958 -11.06230 -10.73274 -10.49561 -10.47332 -9.93641 -8.62081 -7.83640 -5.28498 1.47510 1.49269 1.58402 1.69362 2.28428 2.53357 2.75175 3.31145 3.54071 3.59519 3.62203 3.80884 3.92292 4.01403 4.04231 4.08721 4.26221 4.28934 4.34738 4.41829 4.48308 4.52094 4.53857 4.55792 4.56866 4.61789 4.67855 4.70122 4.76712 4.80465 4.86157 4.90995 4.95608 4.97337 4.97612 5.05185 5.08151 5.12447 5.15514 5.23334 5.27940 5.29746 5.31560 5.35616 5.48090 5.49525 5.58246 5.66855 5.71500 5.80293 6.19118 6.42419 6.71682 7.18494 7.36180 7.90121 8.42519 9.22617 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003643 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.820457 B = 7684.403671 C = 8822.490689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.408 6.408 3 C 0.076 3.924 4 C -0.083 4.083 5 C 0.527 3.473 6 O -0.583 6.583 7 N -0.706 5.706 8 C 0.156 3.844 9 H 0.074 0.926 10 C -0.156 4.156 11 C -0.093 4.093 12 H 0.061 0.939 13 C -0.098 4.098 14 C -0.131 4.131 15 C 0.176 3.824 16 N -0.608 5.608 17 C -0.258 4.258 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.269 1.269 25 C 0.156 3.844 26 C -0.101 4.101 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.103 4.103 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.051 0.949 44 H -0.005 1.005 45 H 0.248 0.752 46 H 0.047 0.953 47 H 0.020 0.980 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.043 0.957 52 H 0.088 0.912 53 H 0.055 0.945 54 H 0.096 0.904 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 20.339 -5.314 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.328 6.328 3 C 0.000 4.000 4 C -0.086 4.086 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.358 5.358 8 C 0.051 3.949 9 H 0.092 0.908 10 C -0.214 4.214 11 C -0.114 4.114 12 H 0.079 0.921 13 C -0.136 4.136 14 C -0.170 4.170 15 C 0.050 3.950 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.791 3.209 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.030 3.970 26 C -0.139 4.139 27 C -0.165 4.165 28 C -0.154 4.154 29 C -0.141 4.141 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.013 0.987 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.118 0.882 50 H 0.104 0.896 51 H 0.061 0.939 52 H 0.106 0.894 53 H 0.074 0.926 54 H 0.114 0.886 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.065 20.358 -4.753 21.297 hybrid contribution -1.244 -0.971 -0.297 1.606 sum 2.821 19.387 -5.050 20.231 Atomic orbital electron populations 1.22817 0.79401 1.03206 1.00910 1.87740 1.21304 1.28183 1.95556 1.22588 0.90220 0.85158 1.02073 1.21772 0.95195 0.97628 0.94021 1.20684 0.79483 0.81584 0.86864 1.90615 1.37771 1.69414 1.48575 1.46267 1.48857 1.14168 1.26524 1.20829 0.93667 0.92277 0.88166 0.90761 1.22175 0.96243 1.00338 1.02670 1.21676 0.97731 0.94933 0.97050 0.92094 1.21417 0.98541 0.97538 0.96057 1.22014 0.98727 0.97683 0.98547 1.20599 0.97538 0.92671 0.84190 1.44269 1.31567 1.38414 1.18803 1.19481 1.07275 0.92889 1.19194 0.91583 1.25753 1.01999 0.95395 1.01359 1.70186 1.36902 1.00186 1.50853 0.85347 0.80601 0.77332 0.77603 1.21157 1.22167 1.19398 1.21038 0.92677 0.88374 0.94875 1.22593 0.96448 0.99616 0.95241 1.22452 0.96018 0.96215 1.01809 1.22068 0.97317 0.96642 0.99362 1.22075 0.97510 0.93199 1.01273 0.90135 0.93762 0.91930 0.93160 0.89296 0.75054 0.90744 0.92422 0.93208 0.91859 0.90958 0.93337 0.91219 0.93045 0.98670 0.94260 0.93426 0.96238 0.92103 0.88213 0.89587 0.93856 0.89370 0.92574 0.88573 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -9.22 8.01 -148.98 -1.19 -10.41 16 3 C 0.08 1.40 4.70 71.98 0.34 1.74 16 4 C -0.08 -1.74 0.60 -51.86 -0.03 -1.78 16 5 C 0.53 15.12 6.27 87.66 0.55 15.67 16 6 O -0.58 -20.21 15.09 -3.04 -0.05 -20.26 16 7 N -0.71 -20.65 4.47 -442.53 -1.98 -22.63 16 8 C 0.16 4.76 2.35 44.99 0.11 4.86 16 9 H 0.07 2.37 7.58 -2.39 -0.02 2.36 16 10 C -0.16 -4.57 8.76 71.98 0.63 -3.94 16 11 C -0.09 -3.17 2.27 -10.72 -0.02 -3.19 16 12 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 13 C -0.10 -3.17 4.89 30.62 0.15 -3.02 16 14 C -0.13 -4.92 6.08 30.67 0.19 -4.73 16 15 C 0.18 8.51 5.30 86.36 0.46 8.97 16 16 N -0.61 -30.26 2.99 -699.09 -2.09 -32.36 16 17 C -0.26 -14.04 9.58 84.03 0.81 -13.24 16 18 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 19 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 20 N -0.93 -55.28 11.20 21.65 0.24 -55.03 16 21 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C 0.16 6.36 5.26 86.36 0.45 6.81 16 26 C -0.10 -1.91 5.60 32.01 0.18 -1.73 16 27 C -0.13 -2.32 6.62 31.79 0.21 -2.11 16 28 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 29 C -0.10 -1.86 5.75 31.32 0.18 -1.68 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.41 12.14 5.00 -92.71 -0.46 11.68 16 36 H 0.07 2.03 6.59 -2.39 -0.02 2.02 16 37 H 0.06 1.76 6.23 -2.39 -0.01 1.75 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.05 2.83 6.06 -2.39 -0.01 2.81 16 44 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.05 1.93 6.75 -2.39 -0.02 1.91 16 47 H 0.02 0.83 6.06 -2.38 -0.01 0.81 16 48 H 0.06 1.35 7.63 -2.39 -0.02 1.33 16 49 H 0.10 1.46 8.06 -2.38 -0.02 1.44 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.10 1.20 7.84 -2.39 -0.02 1.18 16 55 H 0.06 1.47 6.86 -2.39 -0.02 1.46 16 Total: -1.00 -66.76 409.05 3.42 -63.34 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.39 Total: 30.46 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.07 Total: 0.47 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.83 Total: -110.02 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.24 Total: -30.67 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.76 3.42 -63.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661989433.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds