Wall clock time and date at job start Tue Mar 31 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00189 * 2 1 4 4 C 1.53006 * 109.46995 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46800 * 175.34623 * 4 3 2 6 6 C 1.50700 * 112.84758 * 295.21950 * 5 4 3 7 7 O 1.21280 * 119.99422 * 112.13398 * 6 5 4 8 8 N 1.34774 * 120.00384 * 292.12648 * 6 5 4 9 9 C 1.46498 * 120.00175 * 175.24785 * 8 6 5 10 10 H 1.09004 * 109.46896 * 324.72317 * 9 8 6 11 11 C 1.53005 * 109.47256 * 84.72014 * 9 8 6 12 12 C 1.52998 * 109.46966 * 204.72594 * 9 8 6 13 13 H 1.08997 * 109.49981 * 60.00125 * 12 9 8 14 14 C 1.53040 * 109.49519 * 180.02562 * 12 9 8 15 15 C 1.53043 * 109.53940 * 181.31374 * 14 12 9 16 16 C 1.53185 * 109.31145 * 298.63564 * 15 14 12 17 17 N 1.46933 * 108.77743 * 54.63329 * 16 15 14 18 18 C 1.36937 * 120.63019 * 126.43224 * 17 16 15 19 19 H 1.07995 * 119.99982 * 208.17841 * 18 17 16 20 20 C 1.38815 * 120.00092 * 28.17995 * 18 17 16 21 21 N 1.31613 * 120.00119 * 16.70935 * 20 18 17 22 22 Si 1.86796 * 119.99812 * 196.71551 * 20 18 17 23 23 H 1.48497 * 109.47528 * 59.99764 * 22 20 18 24 24 H 1.48498 * 109.47113 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46815 * 299.99525 * 22 20 18 26 26 C 1.46932 * 118.76448 * 306.41300 * 17 16 15 27 27 C 1.53777 * 113.68923 * 66.49294 * 5 4 3 28 28 C 1.53783 * 87.08357 * 89.12351 * 27 5 4 29 29 C 1.53777 * 113.61041 * 164.02689 * 5 4 3 30 30 H 1.09001 * 109.47112 * 300.00205 * 1 2 3 31 31 H 1.09004 * 109.46820 * 59.99512 * 1 2 3 32 32 H 1.08993 * 109.47428 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46854 * 60.00417 * 3 2 1 34 34 H 1.08993 * 109.47450 * 299.99888 * 3 2 1 35 35 H 1.08997 * 109.46666 * 55.34947 * 4 3 2 36 36 H 1.09000 * 109.47154 * 295.34857 * 4 3 2 37 37 H 0.97002 * 119.99766 * 354.96475 * 8 6 5 38 38 H 1.08997 * 109.46554 * 60.00340 * 11 9 8 39 39 H 1.08994 * 109.46876 * 179.97438 * 11 9 8 40 40 H 1.08995 * 109.47324 * 300.00431 * 11 9 8 41 41 H 1.09001 * 109.45924 * 301.33463 * 14 12 9 42 42 H 1.09004 * 109.46074 * 61.30752 * 14 12 9 43 43 H 1.09003 * 109.49268 * 58.58412 * 15 14 12 44 44 H 1.08997 * 109.49875 * 178.64986 * 15 14 12 45 45 H 1.09002 * 109.58797 * 174.41978 * 16 15 14 46 46 H 1.08999 * 109.59180 * 294.84450 * 16 15 14 47 47 H 0.96994 * 120.00497 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.56054 * 293.78496 * 26 17 16 49 49 H 1.08995 * 109.61694 * 173.35708 * 26 17 16 50 50 H 1.08998 * 113.61251 * 203.67450 * 27 5 4 51 51 H 1.08998 * 113.61668 * 334.57589 * 27 5 4 52 52 H 1.09000 * 113.61536 * 270.88284 * 28 27 5 53 53 H 1.08999 * 113.61336 * 139.97674 * 28 27 5 54 54 H 1.09001 * 113.61524 * 25.34762 * 29 5 4 55 55 H 1.08997 * 113.61643 * 156.25128 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1575 2.5775 -0.1164 6 6 3.8473 3.2484 -1.4296 7 8 3.1296 4.2258 -1.4565 8 7 4.3673 2.7625 -2.5741 9 6 3.9836 3.3496 -3.8603 10 1 2.9376 3.6540 -3.8232 11 6 4.8603 4.5708 -4.1454 12 6 4.1744 2.3143 -4.9706 13 1 3.5499 1.4442 -4.7679 14 6 3.7743 2.9272 -6.3146 15 6 3.9336 1.8823 -7.4214 16 6 5.4014 1.4517 -7.5041 17 7 5.8361 0.9958 -6.1766 18 6 6.4092 -0.2374 -6.0156 19 1 6.3155 -0.7575 -5.0738 20 6 7.1107 -0.8189 -7.0628 21 7 7.5099 -0.0814 -8.0772 22 14 7.4879 -2.6481 -7.0323 23 1 6.2172 -3.4149 -6.9822 24 1 8.2421 -3.0184 -8.2567 25 1 8.3050 -2.9651 -5.8335 26 6 5.6447 1.8880 -5.0250 27 6 3.9033 3.4725 1.1080 28 6 5.1944 2.8881 1.7050 29 6 5.6479 2.6202 0.2602 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8518 0.5732 -0.8445 36 1 3.8626 0.7174 0.9296 37 1 4.9988 2.0268 -2.5459 38 1 5.9062 4.2663 -4.1826 39 1 4.5751 5.0072 -5.1026 40 1 4.7244 5.3082 -3.3544 41 1 2.7352 3.2535 -6.2701 42 1 4.4147 3.7829 -6.5286 43 1 3.3124 1.0156 -7.1955 44 1 3.6258 2.3120 -8.3746 45 1 5.5035 0.6374 -8.2216 46 1 6.0132 2.2972 -7.8185 47 1 8.0004 -0.4876 -8.8088 48 1 6.2767 2.7690 -5.1370 49 1 5.9069 1.3620 -4.1071 50 1 3.9666 4.5387 0.8901 51 1 3.0050 3.2059 1.6648 52 1 5.0343 1.9809 2.2877 53 1 5.8069 3.6242 2.2256 54 1 6.1580 1.6654 0.1326 55 1 6.1882 3.4533 -0.1894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662010661.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:05 Heat of formation + Delta-G solvation = -77.284534 kcal Electronic energy + Delta-G solvation = -31633.721353 eV Core-core repulsion = 27670.552358 eV Total energy + Delta-G solvation = -3963.168994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86097 -40.09396 -38.90670 -38.41383 -36.61132 -34.66968 -32.81366 -32.33003 -32.06289 -29.56891 -27.94473 -27.20376 -26.85492 -26.33905 -25.07963 -23.93902 -23.64421 -22.42186 -21.54182 -20.20223 -19.52571 -18.65420 -18.10753 -17.46297 -17.24622 -16.90294 -16.80445 -16.19561 -16.06631 -15.83486 -15.77443 -15.44053 -15.35559 -15.05481 -14.68943 -14.30333 -14.12791 -13.98900 -13.75540 -13.56305 -13.43065 -13.34038 -13.20662 -13.03530 -12.72395 -12.70045 -12.54960 -12.37002 -12.30914 -12.16124 -12.07583 -12.05028 -11.94189 -11.69324 -11.50842 -11.40875 -11.27786 -11.16867 -11.07407 -10.66779 -10.50090 -10.47508 -10.04354 -8.63733 -7.84977 -5.30316 1.47778 1.50354 1.56541 1.63192 2.22854 2.52481 2.67966 3.29850 3.38749 3.57582 3.59216 3.79759 3.88681 3.90853 3.97940 4.00069 4.05724 4.08947 4.23431 4.33485 4.37885 4.42472 4.46841 4.47696 4.51434 4.62367 4.65811 4.69110 4.76614 4.80814 4.82084 4.84403 4.89422 4.92981 4.96566 5.00414 5.05056 5.09323 5.13258 5.15751 5.21151 5.24684 5.28593 5.34139 5.47558 5.49453 5.55933 5.60184 5.68932 5.79609 6.15008 6.41052 6.58078 7.17215 7.25171 7.88834 8.40558 9.20928 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.003272 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.170419 B = 8554.194685 C = 9148.611357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.064 3.936 4 C -0.085 4.085 5 C -0.104 4.104 6 C 0.527 3.473 7 O -0.579 6.579 8 N -0.715 5.715 9 C 0.159 3.841 10 H 0.074 0.926 11 C -0.157 4.157 12 C -0.097 4.097 13 H 0.061 0.939 14 C -0.098 4.098 15 C -0.132 4.132 16 C 0.175 3.825 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.154 3.846 27 C -0.115 4.115 28 C -0.127 4.127 29 C -0.124 4.124 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.050 0.950 46 H -0.004 1.004 47 H 0.249 0.751 48 H 0.022 0.978 49 H 0.052 0.948 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.100 0.900 53 H 0.081 0.919 54 H 0.090 0.910 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 5.775 18.387 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.013 4.013 4 C -0.122 4.122 5 C -0.108 4.108 6 C 0.315 3.685 7 O -0.459 6.459 8 N -0.366 5.366 9 C 0.054 3.946 10 H 0.092 0.908 11 C -0.215 4.215 12 C -0.117 4.117 13 H 0.080 0.920 14 C -0.136 4.136 15 C -0.171 4.171 16 C 0.050 3.950 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.199 1.199 26 C 0.028 3.972 27 C -0.152 4.152 28 C -0.164 4.164 29 C -0.162 4.162 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.243 0.757 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.058 0.942 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.118 0.882 53 H 0.100 0.900 54 H 0.108 0.892 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.057 6.231 18.217 21.722 hybrid contribution 0.440 -0.953 -0.795 1.316 sum -9.617 5.278 17.422 20.588 Atomic orbital electron populations 1.22917 0.79674 1.03875 1.00596 1.87821 1.21341 1.28360 1.95539 1.22497 0.94329 0.84303 1.00140 1.21203 0.92669 0.93435 1.04942 1.22150 1.00175 0.96561 0.91872 1.20859 0.78464 0.83291 0.85904 1.90643 1.39630 1.27950 1.87630 1.46213 1.47052 1.37605 1.05720 1.20815 0.98925 0.92959 0.81868 0.90752 1.22179 1.00192 0.97172 1.01968 1.21719 0.98380 0.97166 0.94469 0.92016 1.21426 1.01238 0.97676 0.93219 1.22020 0.97882 0.98465 0.98711 1.20598 0.90680 0.96390 0.87354 1.44261 1.69694 1.15485 1.03712 1.19468 1.26073 0.93846 0.99842 0.91501 1.25739 0.98047 1.02001 0.98553 1.70171 1.40964 1.35336 1.11535 0.85417 0.77692 0.80993 0.76814 1.20673 1.22214 1.19926 1.21055 0.93291 0.92656 0.90167 1.22858 0.99663 0.98754 0.93973 1.22824 0.96029 1.02070 0.95473 1.22991 0.92123 1.03551 0.97514 0.92685 0.94312 0.88225 0.91835 0.95329 0.90884 0.87871 0.75734 0.92288 0.90718 0.93112 0.90939 0.91681 0.93447 0.91262 0.93148 0.98560 0.94208 0.96043 0.92945 0.90567 0.90299 0.88190 0.89993 0.89166 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.50 10.70 -148.98 -1.59 -11.09 16 3 C 0.06 1.36 5.65 71.98 0.41 1.76 16 4 C -0.08 -1.60 4.95 30.60 0.15 -1.45 16 5 C -0.10 -2.03 0.78 -52.40 -0.04 -2.07 16 6 C 0.53 13.84 5.79 87.66 0.51 14.35 16 7 O -0.58 -18.93 15.86 -3.03 -0.05 -18.98 16 8 N -0.72 -18.61 5.00 -442.53 -2.21 -20.83 16 9 C 0.16 4.47 2.37 44.99 0.11 4.58 16 10 H 0.07 2.21 7.66 -2.38 -0.02 2.19 16 11 C -0.16 -4.24 8.79 71.98 0.63 -3.61 16 12 C -0.10 -3.10 2.33 -10.72 -0.02 -3.12 16 13 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.10 -3.04 4.77 30.62 0.15 -2.90 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.68 16 16 C 0.18 8.37 5.30 86.36 0.46 8.83 16 17 N -0.61 -29.69 2.99 -699.08 -2.09 -31.78 16 18 C -0.26 -14.09 9.58 84.03 0.81 -13.29 16 19 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 20 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 21 N -0.93 -54.81 11.18 21.65 0.24 -54.57 16 22 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.15 5.95 5.30 86.36 0.46 6.40 16 27 C -0.11 -1.98 6.73 31.12 0.21 -1.77 16 28 C -0.13 -1.62 7.73 31.12 0.24 -1.37 16 29 C -0.12 -1.97 7.22 31.12 0.22 -1.74 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.17 6.96 -2.39 -0.02 1.15 16 34 H 0.03 0.72 7.41 -2.39 -0.02 0.70 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.56 7.31 -2.39 -0.02 1.54 16 37 H 0.41 10.02 6.98 -92.71 -0.65 9.37 16 38 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 39 H 0.07 1.89 6.46 -2.39 -0.02 1.88 16 40 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.99 6.50 -2.38 -0.02 1.98 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 2.75 6.06 -2.39 -0.01 2.73 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.02 0.86 6.18 -2.38 -0.01 0.84 16 49 H 0.05 1.93 6.52 -2.39 -0.02 1.92 16 50 H 0.08 1.57 7.76 -2.39 -0.02 1.55 16 51 H 0.08 1.24 6.88 -2.39 -0.02 1.22 16 52 H 0.10 1.00 7.61 -2.39 -0.02 0.98 16 53 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.09 1.26 8.10 -2.39 -0.02 1.25 16 55 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 Total: -1.00 -66.93 414.44 2.67 -64.26 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.21 Total: 27.21 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 6.13 Total: -0.61 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.06 Total: -107.17 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.64 Total: -30.07 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.93 2.67 -64.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662010661.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds