Wall clock time and date at job start Tue Mar 31 2020 22:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47527 * 239.99875 * 2 1 3 5 5 C 1.53007 * 109.46938 * 292.53957 * 4 2 1 6 6 C 1.50695 * 112.84588 * 295.07500 * 5 4 2 7 7 O 1.21283 * 119.99979 * 109.30044 * 6 5 4 8 8 N 1.34773 * 120.00343 * 289.29761 * 6 5 4 9 9 C 1.47158 * 120.97890 * 4.05870 * 8 6 5 10 10 C 1.53716 * 108.16027 * 129.43220 * 9 8 6 11 11 O 1.42966 * 109.14577 * 52.53615 * 10 9 8 12 12 C 1.42960 * 114.16914 * 297.29127 * 11 10 9 13 13 H 1.09000 * 109.51070 * 302.65619 * 12 11 10 14 14 C 1.52998 * 109.51196 * 182.50536 * 12 11 10 15 15 H 1.08996 * 109.47309 * 180.25401 * 14 12 11 16 16 C 1.53009 * 109.47339 * 60.25183 * 14 12 11 17 17 N 1.46500 * 109.46967 * 300.25375 * 14 12 11 18 18 C 1.36940 * 119.99788 * 205.00314 * 17 14 12 19 19 H 1.08005 * 119.99967 * 359.97438 * 18 17 14 20 20 C 1.38807 * 119.99954 * 179.97438 * 18 17 14 21 21 N 1.31619 * 119.99901 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00050 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46924 * 90.00274 * 22 20 18 24 24 H 1.48496 * 109.47402 * 209.99895 * 22 20 18 25 25 H 1.48500 * 109.47244 * 330.00326 * 22 20 18 26 26 C 1.47153 * 120.98661 * 184.34226 * 8 6 5 27 27 C 1.53778 * 113.61375 * 163.76904 * 5 4 2 28 28 C 1.53781 * 87.07934 * 220.01702 * 27 5 4 29 29 C 1.53776 * 87.08319 * 25.43677 * 28 27 5 30 30 H 1.09005 * 109.46986 * 69.48627 * 1 2 3 31 31 H 1.08996 * 109.47074 * 189.48569 * 1 2 3 32 32 H 1.08997 * 109.47289 * 309.48912 * 1 2 3 33 33 H 1.08999 * 109.47150 * 119.99341 * 2 1 3 34 34 H 1.08999 * 109.46562 * 299.99702 * 3 2 1 35 35 H 1.08998 * 109.47060 * 59.99462 * 3 2 1 36 36 H 1.08993 * 109.46992 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.46962 * 52.53467 * 4 2 1 38 38 H 1.08995 * 109.47494 * 172.53665 * 4 2 1 39 39 H 1.08998 * 109.68166 * 249.21269 * 9 8 6 40 40 H 1.08995 * 109.67810 * 9.76657 * 9 8 6 41 41 H 1.08998 * 109.65849 * 292.57371 * 10 9 8 42 42 H 1.08995 * 109.44232 * 172.37460 * 10 9 8 43 43 H 1.09002 * 109.46510 * 299.99979 * 16 14 12 44 44 H 1.08995 * 109.46916 * 59.99944 * 16 14 12 45 45 H 1.08991 * 109.47069 * 180.02562 * 16 14 12 46 46 H 0.96993 * 120.00562 * 24.99945 * 17 14 12 47 47 H 0.97008 * 119.99519 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.67928 * 350.23805 * 26 8 6 49 49 H 1.08997 * 109.67896 * 110.75222 * 26 8 6 50 50 H 1.09000 * 113.61919 * 334.56435 * 27 5 4 51 51 H 1.08994 * 113.61354 * 105.47200 * 27 5 4 52 52 H 1.08998 * 113.61727 * 270.88156 * 28 27 5 53 53 H 1.09003 * 113.61264 * 139.98459 * 28 27 5 54 54 H 1.09006 * 113.61538 * 220.02349 * 29 28 27 55 55 H 1.08991 * 113.69893 * 89.12532 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6888 -2.2077 -1.1590 6 6 2.3939 -2.9078 -0.0260 7 8 1.7664 -3.2723 0.9458 8 7 3.7216 -3.1292 -0.0927 9 6 4.5189 -2.6189 -1.2194 10 6 5.7308 -1.8663 -0.6467 11 8 6.4131 -2.7133 0.2812 12 6 5.6318 -3.0834 1.4197 13 1 5.2949 -2.1853 1.9375 14 6 6.4805 -3.9331 2.3676 15 1 5.8828 -4.2186 3.2332 16 6 7.6938 -3.1237 2.8301 17 7 6.9348 -5.1380 1.6689 18 6 7.2499 -6.2645 2.3809 19 1 7.1639 -6.2645 3.4575 20 6 7.6798 -7.4063 1.7189 21 7 7.9832 -8.4888 2.4033 22 14 7.8278 -7.4064 -0.1432 23 1 9.1927 -6.9684 -0.5313 24 1 7.5825 -8.7770 -0.6592 25 1 6.8261 -6.4738 -0.7195 26 6 4.4159 -3.8934 0.9558 27 6 1.7926 -2.9478 -2.5029 28 6 0.5122 -3.6978 -2.0992 29 6 0.1776 -2.4878 -1.2111 30 1 -0.3633 0.3601 -0.9625 31 1 -0.3633 -1.0136 0.1694 32 1 -0.3634 0.6535 0.7931 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.5719 -0.2903 -2.1341 38 1 3.1218 -0.6071 -1.3184 39 1 4.8580 -3.4514 -1.8359 40 1 3.9136 -1.9397 -1.8195 41 1 5.3943 -0.9639 -0.1364 42 1 6.4066 -1.5962 -1.4581 43 1 8.2914 -2.8383 1.9644 44 1 7.3558 -2.2273 3.3499 45 1 8.2986 -3.7292 3.5050 46 1 7.0123 -5.1379 0.7021 47 1 8.2833 -9.2869 1.9405 48 1 3.7422 -4.0585 1.7967 49 1 4.7442 -4.8522 0.5547 50 1 1.6640 -2.2995 -3.3696 51 1 2.6691 -3.5910 -2.5806 52 1 0.7007 -4.6128 -1.5377 53 1 -0.1874 -3.8418 -2.9226 54 1 -0.2496 -2.7595 -0.2457 55 1 -0.3927 -1.7129 -1.7232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675606300.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:25 Heat of formation + Delta-G solvation = -67.000774 kcal Electronic energy + Delta-G solvation = -32602.741237 eV Core-core repulsion = 28640.018180 eV Total energy + Delta-G solvation = -3962.723057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.35275 -40.41177 -38.59595 -37.27831 -36.38405 -35.84225 -34.25197 -32.14119 -30.70460 -29.95834 -28.81194 -28.42270 -26.29416 -25.88842 -25.04058 -24.66660 -23.67567 -21.95617 -21.27564 -20.75069 -19.95456 -19.45064 -17.81765 -17.59161 -17.23856 -17.05334 -16.56032 -16.32823 -16.12363 -15.74043 -15.58114 -15.48986 -15.13129 -14.79630 -14.73655 -14.56765 -14.35747 -14.10200 -13.75039 -13.61173 -13.39897 -13.27186 -13.21732 -12.94763 -12.87476 -12.82628 -12.66349 -12.58602 -12.53852 -12.26795 -12.13691 -11.94688 -11.82617 -11.75400 -11.63063 -11.55396 -11.43998 -11.21278 -11.08741 -11.01916 -10.80155 -10.63072 -9.65683 -9.27943 -8.01615 -5.33452 1.35665 1.39005 1.46039 1.52313 1.78183 2.48235 2.71194 3.30548 3.31429 3.37688 3.53316 3.60683 3.73033 3.79504 3.86648 3.89902 3.98088 4.00678 4.12481 4.15786 4.20808 4.27140 4.35004 4.46589 4.52924 4.58113 4.67679 4.75403 4.76347 4.78304 4.80777 4.81211 4.83264 4.87783 4.92376 4.97180 5.00386 5.02663 5.05629 5.07723 5.11861 5.17487 5.27191 5.29287 5.35083 5.45544 5.49224 5.52024 5.54507 5.77727 6.16584 6.24865 6.31859 7.06947 7.09248 7.85137 8.06365 9.20201 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003585 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.813328 B = 7807.483520 C = 8547.108815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.095 4.095 5 C -0.103 4.103 6 C 0.535 3.465 7 O -0.584 6.584 8 N -0.610 5.610 9 C 0.061 3.939 10 C 0.041 3.959 11 O -0.383 6.383 12 C 0.095 3.905 13 H 0.078 0.922 14 C 0.178 3.822 15 H 0.056 0.944 16 C -0.149 4.149 17 N -0.742 5.742 18 C -0.224 4.224 19 H 0.058 0.942 20 C -0.063 4.063 21 N -0.985 5.985 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.257 1.257 26 C 0.090 3.910 27 C -0.119 4.119 28 C -0.153 4.153 29 C -0.110 4.110 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.134 0.866 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.368 0.632 47 H 0.256 0.744 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.130 0.870 51 H 0.064 0.936 52 H 0.046 0.954 53 H 0.092 0.908 54 H 0.053 0.947 55 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 24.461 -15.717 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.132 4.132 5 C -0.107 4.107 6 C 0.326 3.674 7 O -0.464 6.464 8 N -0.343 5.343 9 C -0.061 4.061 10 C -0.036 4.036 11 O -0.302 6.302 12 C 0.035 3.965 13 H 0.096 0.904 14 C 0.069 3.931 15 H 0.074 0.926 16 C -0.208 4.208 17 N -0.386 5.386 18 C -0.355 4.355 19 H 0.076 0.924 20 C -0.254 4.254 21 N -0.636 5.636 22 Si 0.781 3.219 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.181 1.181 26 C -0.034 4.034 27 C -0.156 4.156 28 C -0.190 4.190 29 C -0.147 4.147 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.202 0.798 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.148 0.852 51 H 0.082 0.918 52 H 0.065 0.935 53 H 0.111 0.889 54 H 0.072 0.928 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.989 24.087 -15.050 32.115 hybrid contribution 0.200 -1.175 -0.037 1.193 sum -14.789 22.912 -15.087 31.166 Atomic orbital electron populations 1.22159 0.94756 1.02052 1.02324 1.21052 0.96749 0.96623 0.97195 1.21807 1.00958 0.94829 1.02355 1.21833 1.02174 0.89744 0.99439 1.21973 0.97861 0.97007 0.93809 1.20767 0.81108 0.77814 0.87756 1.90659 1.66186 1.53894 1.35624 1.48212 1.07527 1.54256 1.24283 1.23067 0.94107 1.00319 0.88605 1.23349 0.94437 0.92214 0.93617 1.88018 1.39740 1.68884 1.33518 1.22561 0.89949 0.96570 0.87378 0.90428 1.20456 0.94092 0.85552 0.92976 0.92562 1.22144 0.98762 0.99131 1.00798 1.42659 1.81042 1.09732 1.05189 1.19047 1.34925 0.89722 0.91801 0.92394 1.25413 1.02278 0.95567 1.02184 1.69883 1.53899 1.03488 1.36304 0.85440 0.78577 0.76471 0.81460 1.20434 1.22524 1.18143 1.22070 0.94193 0.95023 0.92069 1.23182 0.98144 0.98814 0.95495 1.22892 0.98975 0.96894 1.00268 1.23057 0.93318 0.98429 0.99898 0.90594 0.92546 0.93531 0.94969 0.90880 0.93260 0.92617 0.87354 0.90252 0.90787 0.84889 0.91426 0.84865 0.92583 0.91229 0.94593 0.79785 0.93478 0.90519 0.92209 0.85206 0.91752 0.93532 0.88937 0.92782 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 7.80 71.98 0.56 -1.67 16 2 C -0.10 -1.49 2.84 -10.79 -0.03 -1.52 16 3 C -0.14 -1.66 9.17 71.98 0.66 -1.00 16 4 C -0.09 -1.10 3.84 30.60 0.12 -0.99 16 5 C -0.10 -1.79 0.28 -52.40 -0.01 -1.80 16 6 C 0.54 14.86 5.46 87.66 0.48 15.34 16 7 O -0.58 -21.69 15.48 -3.04 -0.05 -21.74 16 8 N -0.61 -16.46 3.01 -816.55 -2.46 -18.92 16 9 C 0.06 1.14 4.73 86.50 0.41 1.54 16 10 C 0.04 0.75 7.00 72.22 0.51 1.26 16 11 O -0.38 -11.11 9.22 -148.98 -1.37 -12.48 16 12 C 0.09 3.00 2.53 30.69 0.08 3.08 16 13 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.18 6.89 2.73 44.99 0.12 7.01 16 15 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 16 C -0.15 -5.20 9.35 71.99 0.67 -4.53 16 17 N -0.74 -35.28 4.09 -322.93 -1.32 -36.61 16 18 C -0.22 -12.97 10.41 84.03 0.87 -12.10 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 20 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 22 Si 0.95 47.06 27.73 68.60 1.90 48.96 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 26 C 0.09 3.09 5.87 86.35 0.51 3.60 16 27 C -0.12 -1.59 6.11 31.12 0.19 -1.40 16 28 C -0.15 -2.62 7.80 31.12 0.24 -2.37 16 29 C -0.11 -1.86 4.63 31.12 0.14 -1.72 16 30 H 0.08 0.72 7.82 -2.38 -0.02 0.70 16 31 H 0.06 1.00 4.87 -2.39 -0.01 0.99 16 32 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 33 H 0.03 0.74 7.34 -2.39 -0.02 0.72 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.65 8.01 -2.39 -0.02 0.63 16 38 H 0.08 0.80 5.74 -2.39 -0.01 0.78 16 39 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.13 1.55 3.68 -2.39 -0.01 1.54 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.37 17.26 5.07 -92.71 -0.47 16.79 16 47 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 48 H 0.08 2.94 7.07 -2.39 -0.02 2.93 16 49 H 0.06 2.40 7.28 -2.39 -0.02 2.38 16 50 H 0.13 0.82 8.05 -2.39 -0.02 0.80 16 51 H 0.06 1.02 6.76 -2.39 -0.02 1.00 16 52 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.05 1.27 6.46 -2.38 -0.02 1.25 16 55 H 0.12 1.30 6.97 -2.39 -0.02 1.29 16 Total: -1.00 -77.46 405.19 3.32 -74.13 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.34 Total: 31.43 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.99 Total: -0.62 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -3.48 Total: -119.69 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.42 Total: -34.22 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.96 kcal Total: -77.46 3.32 -74.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675606300.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.132 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds