Wall clock time and date at job start Tue Mar 31 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46989 * 2 1 4 4 N 1.46498 * 109.46865 * 119.99704 * 2 1 3 5 5 C 1.36940 * 120.00447 * 285.87471 * 4 2 1 6 6 H 1.07996 * 119.99569 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00372 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47131 * 60.00137 * 9 7 5 11 11 H 1.48493 * 109.47545 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47072 * 300.00550 * 9 7 5 13 13 C 1.53000 * 109.47430 * 239.99952 * 2 1 3 14 14 H 1.09003 * 109.69859 * 292.95022 * 13 2 1 15 15 C 1.53186 * 109.58950 * 53.30106 * 13 2 1 16 16 C 1.53041 * 109.31718 * 174.42181 * 15 13 2 17 17 C 1.53041 * 109.53760 * 298.64157 * 16 15 13 18 18 C 1.52761 * 109.38578 * 61.23453 * 17 16 15 19 19 N 1.46924 * 109.00913 * 305.58935 * 18 17 16 20 20 C 1.34774 * 120.62842 * 233.58446 * 19 18 17 21 21 O 1.21286 * 119.99694 * 174.03987 * 20 19 18 22 22 C 1.50701 * 120.00282 * 354.03749 * 20 19 18 23 23 O 1.42899 * 109.47086 * 180.02562 * 22 20 19 24 24 C 1.42897 * 114.00029 * 180.02562 * 23 22 20 25 25 C 1.52996 * 109.47340 * 89.99478 * 24 23 22 26 26 C 1.53000 * 109.47188 * 180.02562 * 25 24 23 27 27 C 1.53005 * 109.47302 * 300.00139 * 26 25 24 28 28 C 1.53005 * 109.46726 * 59.99898 * 27 26 25 29 29 C 1.52998 * 109.47153 * 210.00185 * 24 23 22 30 30 H 1.09005 * 109.46754 * 60.00307 * 1 2 3 31 31 H 1.09004 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47421 * 299.99963 * 1 2 3 33 33 H 0.97006 * 119.99891 * 105.87670 * 4 2 1 34 34 H 0.97005 * 119.99823 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.49936 * 294.38102 * 15 13 2 36 36 H 1.09003 * 109.49820 * 54.47250 * 15 13 2 37 37 H 1.09005 * 109.45632 * 58.65370 * 16 15 13 38 38 H 1.08999 * 109.46207 * 178.61743 * 16 15 13 39 39 H 1.08995 * 109.49609 * 181.31667 * 17 16 15 40 40 H 1.09002 * 109.49340 * 301.37619 * 17 16 15 41 41 H 1.08996 * 109.50813 * 185.70556 * 18 17 16 42 42 H 1.09003 * 109.43142 * 65.42652 * 18 17 16 43 43 H 1.08995 * 109.46507 * 60.00515 * 22 20 19 44 44 H 1.08994 * 109.47017 * 300.00271 * 22 20 19 45 45 H 1.09006 * 109.46585 * 329.99845 * 24 23 22 46 46 H 1.09001 * 109.47627 * 299.99909 * 25 24 23 47 47 H 1.08996 * 109.47001 * 60.00572 * 25 24 23 48 48 H 1.08998 * 109.47589 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47406 * 59.99915 * 26 25 24 50 50 H 1.08997 * 109.47210 * 300.00361 * 27 26 25 51 51 H 1.08996 * 109.47370 * 179.97438 * 27 26 25 52 52 H 1.09004 * 109.46834 * 180.02562 * 28 27 26 53 53 H 1.08996 * 109.47262 * 59.99869 * 28 27 26 54 54 H 1.09006 * 109.47098 * 299.99346 * 29 24 23 55 55 H 1.08991 * 109.47410 * 59.99531 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.9406 -0.0795 2.4193 6 1 1.5191 0.9113 2.5020 7 6 2.4028 -0.7340 3.5527 8 7 2.9161 -1.9418 3.4519 9 14 2.2963 0.0992 5.2212 10 1 0.8761 0.3999 5.5346 11 1 2.8529 -0.8026 6.2614 12 1 3.0754 1.3631 5.1939 13 6 2.0400 -0.7212 -1.2492 14 1 1.7853 -1.7795 -1.1922 15 6 1.3981 -0.1050 -2.4961 16 6 2.0151 -0.7350 -3.7470 17 6 3.5166 -0.4405 -3.7809 18 6 4.1818 -1.0555 -2.5509 19 7 3.4984 -0.5701 -1.3442 20 6 4.1954 0.0079 -0.3460 21 8 3.6108 0.5013 0.5952 22 6 5.7011 0.0411 -0.3992 23 8 6.2044 0.7011 0.7641 24 6 7.6299 0.7874 0.8124 25 6 8.0858 2.0816 0.1355 26 6 9.6121 2.1737 0.1867 27 6 10.0747 2.1706 1.6452 28 6 9.6188 0.8763 2.3219 29 6 8.0919 0.7845 2.2709 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.3966 -1.5807 1.1219 34 1 3.2387 -2.3994 4.2441 35 1 0.3249 -0.2951 -2.4846 36 1 1.5775 0.9701 -2.5041 37 1 1.8570 -1.8133 -3.7262 38 1 1.5427 -0.3159 -4.6354 39 1 3.9511 -0.8694 -4.6838 40 1 3.6759 0.6378 -3.7773 41 1 5.2311 -0.7622 -2.5197 42 1 4.1053 -2.1417 -2.6023 43 1 6.0213 0.5805 -1.2905 44 1 6.0860 -0.9781 -0.4333 45 1 8.0634 -0.0668 0.2922 46 1 7.7567 2.0837 -0.9036 47 1 7.6523 2.9358 0.6557 48 1 9.9369 3.0959 -0.2951 49 1 10.0453 1.3195 -0.3336 50 1 9.6415 3.0247 2.1655 51 1 11.1621 2.2357 1.6816 52 1 9.9480 0.8742 3.3611 53 1 10.0519 0.0221 1.8015 54 1 7.6584 1.6387 2.7911 55 1 7.7672 -0.1375 2.7531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689903133.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:26 Heat of formation + Delta-G solvation = -68.111094 kcal Electronic energy + Delta-G solvation = -32340.858230 eV Core-core repulsion = 28378.087025 eV Total energy + Delta-G solvation = -3962.771204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.47704 -40.08762 -38.22499 -37.28404 -36.66167 -34.21254 -33.62049 -31.74964 -31.51172 -30.94777 -29.46888 -28.61492 -26.13042 -25.57207 -24.10547 -23.54286 -23.12684 -21.87382 -21.40805 -20.84932 -20.13674 -18.79772 -18.05609 -17.41490 -16.88900 -16.73260 -16.56113 -16.19799 -15.66777 -15.47728 -15.39492 -15.27816 -14.90121 -14.84150 -14.62146 -14.40920 -14.21774 -13.94425 -13.68072 -13.59047 -13.51989 -13.29524 -13.15221 -12.99853 -12.98728 -12.76864 -12.53837 -12.41295 -12.16559 -12.09679 -12.00288 -11.86996 -11.68503 -11.60191 -11.50839 -11.45693 -11.34951 -11.26267 -11.15145 -10.76007 -10.36943 -9.67251 -9.36544 -8.48547 -7.76445 -4.92774 1.39239 1.44962 1.49108 1.94632 2.09607 2.65564 2.93854 3.57734 3.64657 3.76438 3.79170 3.87347 3.93923 4.04997 4.08659 4.12159 4.16686 4.24662 4.25437 4.33008 4.34797 4.39023 4.40038 4.43467 4.52913 4.55897 4.65031 4.66483 4.75093 4.78733 4.89709 4.92367 4.95741 5.03608 5.07875 5.09138 5.11234 5.17324 5.19783 5.21908 5.22194 5.27389 5.29860 5.36730 5.43510 5.49040 5.50282 5.58728 5.63765 5.95706 6.30816 6.45298 6.75693 7.51045 7.72619 8.29306 8.51881 9.48841 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.005034 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.581001 B = 5561.241829 C = 8583.782473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.179 3.821 3 H 0.032 0.968 4 N -0.695 5.695 5 C -0.164 4.164 6 H 0.050 0.950 7 C -0.088 4.088 8 N -0.977 5.977 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.297 1.297 13 C 0.153 3.847 14 H 0.057 0.943 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.102 3.898 19 N -0.615 5.615 20 C 0.461 3.539 21 O -0.479 6.479 22 C 0.058 3.942 23 O -0.394 6.394 24 C 0.086 3.914 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.121 4.121 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.362 0.638 34 H 0.240 0.760 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.053 0.947 51 H 0.085 0.915 52 H 0.070 0.930 53 H 0.076 0.924 54 H 0.046 0.954 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 3.962 -20.066 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.050 0.950 4 N -0.333 5.333 5 C -0.298 4.298 6 H 0.068 0.932 7 C -0.278 4.278 8 N -0.632 5.632 9 Si 0.785 3.215 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.225 1.225 13 C 0.049 3.951 14 H 0.075 0.925 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.020 4.020 19 N -0.354 5.354 20 C 0.246 3.754 21 O -0.349 6.349 22 C -0.021 4.021 23 O -0.313 6.313 24 C 0.029 3.971 25 C -0.173 4.173 26 C -0.147 4.147 27 C -0.159 4.159 28 C -0.146 4.146 29 C -0.159 4.159 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.194 0.806 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.072 0.928 51 H 0.103 0.897 52 H 0.089 0.911 53 H 0.095 0.905 54 H 0.065 0.935 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.617 4.484 -19.240 22.919 hybrid contribution -0.031 -0.131 1.588 1.594 sum 11.586 4.353 -17.652 21.559 Atomic orbital electron populations 1.22420 0.98075 1.00813 1.00564 1.20522 0.91385 0.95622 0.85389 0.94982 1.42351 1.71843 1.16584 1.02554 1.19088 1.27784 0.97096 0.85792 0.93231 1.25127 1.04538 0.97946 1.00203 1.69774 1.51330 1.14463 1.27676 0.85474 0.77380 0.76977 0.81702 1.20701 1.22261 1.22482 1.21360 0.79659 0.98651 0.95404 0.92459 1.21960 1.00557 1.00040 0.93387 1.21513 0.95559 1.01142 0.96961 1.21828 0.95879 1.01267 0.97578 1.21863 0.97143 0.99313 0.83636 1.47898 1.06853 1.61783 1.18868 1.20791 0.89874 0.81958 0.82793 1.91153 1.69311 1.41681 1.32745 1.22282 0.91935 0.98117 0.89786 1.88118 1.22187 1.78556 1.42418 1.22325 0.79607 0.98319 0.96897 1.22006 0.97656 0.97005 1.00669 1.21486 0.93025 1.03253 0.96906 1.21596 1.01563 0.96945 0.95772 1.21494 0.92132 0.99243 1.01686 1.21625 0.97632 1.01191 0.95451 0.90522 0.93643 0.95320 0.80637 0.95169 0.89663 0.92337 0.91352 0.89798 0.88012 0.92058 0.88803 0.91045 0.88402 0.90514 0.90741 0.90983 0.93161 0.90242 0.90454 0.92793 0.89685 0.91119 0.90516 0.93465 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 8.82 71.98 0.63 -5.48 16 2 C 0.18 7.84 1.78 44.99 0.08 7.92 16 3 H 0.03 1.61 6.47 -2.39 -0.02 1.59 16 4 N -0.70 -38.56 3.05 -322.96 -0.99 -39.54 16 5 C -0.16 -10.30 8.18 84.03 0.69 -9.61 16 6 H 0.05 3.15 7.83 -2.91 -0.02 3.13 16 7 C -0.09 -5.70 5.50 84.86 0.47 -5.24 16 8 N -0.98 -65.74 13.06 21.65 0.28 -65.46 16 9 Si 0.95 52.88 29.55 68.60 2.03 54.91 16 10 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 11 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 12 H -0.30 -16.60 7.11 99.48 0.71 -15.89 16 13 C 0.15 5.11 2.57 44.97 0.12 5.22 16 14 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 15 C -0.12 -2.88 4.62 30.67 0.14 -2.74 16 16 C -0.11 -1.90 5.89 30.62 0.18 -1.72 16 17 C -0.13 -1.94 6.06 30.53 0.19 -1.75 16 18 C 0.10 2.07 6.30 86.22 0.54 2.61 16 19 N -0.62 -19.64 2.98 -795.86 -2.37 -22.01 16 20 C 0.46 18.69 7.43 87.66 0.65 19.34 16 21 O -0.48 -25.48 9.33 15.99 0.15 -25.34 16 22 C 0.06 1.90 4.65 71.24 0.33 2.23 16 23 O -0.39 -15.61 9.52 -129.94 -1.24 -16.85 16 24 C 0.09 2.47 2.61 30.59 0.08 2.55 16 25 C -0.14 -3.11 5.54 30.59 0.17 -2.94 16 26 C -0.11 -1.78 5.92 30.60 0.18 -1.60 16 27 C -0.12 -2.09 5.92 30.60 0.18 -1.91 16 28 C -0.11 -2.24 5.92 30.61 0.18 -2.06 16 29 C -0.12 -3.66 5.58 30.61 0.17 -3.49 16 30 H 0.08 2.31 6.47 -2.38 -0.02 2.29 16 31 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.03 1.22 8.01 -2.39 -0.02 1.20 16 33 H 0.36 21.70 7.70 -92.70 -0.71 20.99 16 34 H 0.24 15.81 8.31 -92.70 -0.77 15.04 16 35 H 0.08 1.86 6.70 -2.38 -0.02 1.84 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.54 5.97 -2.39 -0.01 1.52 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 2.34 7.17 -2.39 -0.02 2.33 16 44 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 45 H 0.07 1.81 7.79 -2.38 -0.02 1.79 16 46 H 0.07 1.46 7.87 -2.39 -0.02 1.44 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 53 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 54 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 55 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -84.17 408.85 2.98 -81.20 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.13 Total: 31.75 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.98 Total: 1.35 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -3.07 Total: -127.01 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.09 Total: -42.19 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.03 Total: 54.91 kcal Total: -84.17 2.98 -81.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689903133.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.085 kcal (2) G-P(sol) polarization free energy of solvation -84.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds