Wall clock time and date at job start Wed Apr 1 2020 00:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47455 * 2 1 4 4 O 1.42898 * 109.47764 * 239.99676 * 2 1 3 5 5 C 1.42904 * 114.00308 * 149.95230 * 4 2 1 6 6 C 1.54236 * 108.89463 * 274.06988 * 5 4 2 7 7 C 1.50557 * 108.48455 * 159.17608 * 6 5 4 8 8 C 1.54068 * 112.41560 * 94.26598 * 7 6 5 9 9 C 1.54072 * 112.81568 * 318.28473 * 8 7 6 10 10 C 1.50476 * 112.49678 * 318.28503 * 9 8 7 11 11 C 1.45545 * 108.89331 * 151.28172 * 5 4 2 12 12 C 1.50708 * 109.47038 * 120.00026 * 2 1 3 13 13 O 1.21273 * 120.00239 * 115.00285 * 12 2 1 14 14 N 1.34781 * 119.99557 * 294.99904 * 12 2 1 15 15 C 1.46492 * 119.99737 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47301 * 180.02562 * 15 14 12 17 17 H 1.08997 * 112.84627 * 316.19837 * 16 15 14 18 18 C 1.53782 * 113.68592 * 87.46831 * 16 15 14 19 19 C 1.53782 * 87.07860 * 139.99560 * 18 16 15 20 20 H 1.09000 * 113.60943 * 220.01531 * 19 18 16 21 21 N 1.46498 * 113.69170 * 89.12554 * 19 18 16 22 22 C 1.36931 * 120.00195 * 105.93490 * 21 19 18 23 23 H 1.08006 * 120.00036 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00503 * 179.97438 * 22 21 19 25 25 N 1.31610 * 120.00445 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99591 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46911 * 89.99866 * 26 24 22 28 28 H 1.48496 * 109.47097 * 209.99801 * 26 24 22 29 29 H 1.48497 * 109.47223 * 330.00093 * 26 24 22 30 30 C 1.53774 * 87.08169 * 334.56387 * 19 18 16 31 31 H 1.08994 * 109.47586 * 296.31951 * 1 2 3 32 32 H 1.09005 * 109.46811 * 56.32726 * 1 2 3 33 33 H 1.09002 * 109.46996 * 176.31533 * 1 2 3 34 34 H 1.08994 * 108.86663 * 32.67678 * 5 4 2 35 35 H 1.08996 * 109.63199 * 278.97529 * 6 5 4 36 36 H 1.09005 * 109.63206 * 39.55819 * 6 5 4 37 37 H 1.09004 * 108.92169 * 333.51378 * 7 6 5 38 38 H 1.08993 * 108.92290 * 215.02631 * 7 6 5 39 39 H 1.08993 * 108.81694 * 197.42257 * 8 7 6 40 40 H 1.09001 * 108.72353 * 79.08067 * 8 7 6 41 41 H 1.08997 * 108.87725 * 197.50165 * 9 8 7 42 42 H 1.09006 * 108.79643 * 79.00091 * 9 8 7 43 43 H 1.08999 * 109.62343 * 334.44341 * 10 9 8 44 44 H 1.09000 * 109.62704 * 213.86658 * 10 9 8 45 45 H 1.08996 * 108.89408 * 303.44341 * 11 5 4 46 46 H 1.08996 * 108.89530 * 61.93647 * 11 5 4 47 47 H 0.96994 * 120.00004 * 0.02562 * 14 12 2 48 48 H 1.09007 * 109.47445 * 60.00116 * 15 14 12 49 49 H 1.08996 * 109.47666 * 300.00271 * 15 14 12 50 50 H 1.08996 * 113.62009 * 25.43994 * 18 16 15 51 51 H 1.09006 * 113.60778 * 254.53848 * 18 16 15 52 52 H 0.96998 * 119.99645 * 285.93028 * 21 19 18 53 53 H 0.97003 * 120.00151 * 180.02562 * 25 24 22 54 54 H 1.09003 * 113.61503 * 139.98194 * 30 19 18 55 55 H 1.08996 * 113.61726 * 270.88726 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.2656 -0.1932 -1.6418 6 6 3.0214 1.0132 -2.5712 7 6 4.2920 1.8167 -2.6543 8 6 5.1571 1.4240 -3.8672 9 6 5.2142 -0.0991 -4.0923 10 6 5.3632 -0.8660 -2.8063 11 6 3.9602 -1.2795 -2.3170 12 6 2.0323 -0.7105 1.2305 13 8 2.6529 -1.7466 1.1216 14 7 1.7918 -0.1941 2.4521 15 6 2.2796 -0.8850 3.6482 16 6 1.8744 -0.0950 4.8944 17 1 2.0325 0.9779 4.7853 18 6 0.4808 -0.4610 5.4317 19 6 1.0827 -0.3522 6.8426 20 1 0.7310 -1.1235 7.5279 21 7 1.0048 0.9946 7.4136 22 6 0.0992 1.2672 8.4038 23 1 -0.5575 0.4892 8.7642 24 6 0.0257 2.5433 8.9453 25 7 -0.8451 2.8054 9.8966 26 14 1.1630 3.8885 8.3236 27 1 0.5156 4.6004 7.1924 28 1 1.4385 4.8502 9.4210 29 1 2.4389 3.2843 7.8629 30 6 2.4434 -0.6718 6.2014 31 1 -0.3634 0.4556 0.9211 32 1 -0.3633 0.5698 -0.8553 33 1 -0.3633 -1.0256 -0.0660 34 1 3.8628 0.1323 -0.7902 35 1 2.7440 0.6602 -3.5644 36 1 2.2231 1.6337 -2.1638 37 1 4.8698 1.6595 -1.7434 38 1 4.0375 2.8737 -2.7300 39 1 6.1702 1.7945 -3.7110 40 1 4.7443 1.8959 -4.7588 41 1 6.0605 -0.3284 -4.7398 42 1 4.2960 -0.4156 -4.5872 43 1 5.8411 -0.2349 -2.0570 44 1 5.9680 -1.7563 -2.9789 45 1 4.0597 -2.1175 -1.6271 46 1 3.3674 -1.5988 -3.1741 47 1 1.2952 0.6345 2.5392 48 1 3.3659 -0.9637 3.6048 49 1 1.8446 -1.8833 3.6941 50 1 0.1626 -1.4699 5.1692 51 1 -0.2794 0.2917 5.2221 52 1 1.5949 1.6933 7.0903 53 1 -0.8967 3.6973 10.2747 54 1 3.2677 -0.0895 6.6132 55 1 2.6618 -1.7384 6.1494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691166871.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:14 Heat of formation + Delta-G solvation = -92.871782 kcal Electronic energy + Delta-G solvation = -29983.003684 eV Core-core repulsion = 26019.158776 eV Total energy + Delta-G solvation = -3963.844908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.39675 -40.43069 -39.76003 -37.65745 -36.07078 -35.03495 -33.53872 -33.01957 -32.58475 -31.31062 -28.81579 -26.47195 -25.86220 -25.70403 -25.20776 -24.66773 -23.05536 -21.70375 -21.46718 -20.25509 -20.07897 -19.55681 -18.42485 -18.32764 -17.25586 -16.75715 -16.53920 -16.37243 -16.07829 -15.87467 -15.69996 -15.27795 -15.14164 -14.77487 -14.70085 -14.60169 -14.30561 -14.12890 -13.96574 -13.61724 -13.36701 -13.28005 -13.15484 -13.09420 -13.05868 -13.00298 -12.65716 -12.56405 -12.41010 -12.24391 -11.95059 -11.89401 -11.65826 -11.55519 -11.51118 -11.42244 -11.28387 -11.22941 -11.11774 -10.97520 -10.87583 -10.23444 -10.09163 -9.29421 -8.02141 -5.36030 1.37842 1.41930 1.49433 1.54411 2.04876 2.48597 2.62035 3.28093 3.50834 3.57690 3.64062 3.73807 3.80138 3.87781 3.95494 3.97838 4.00821 4.03654 4.15264 4.22489 4.26686 4.28290 4.34688 4.37089 4.40801 4.52809 4.66802 4.68798 4.73747 4.82629 4.85351 4.92306 4.94444 4.96612 4.97103 5.05772 5.07662 5.17882 5.20696 5.23850 5.25798 5.29713 5.31394 5.31673 5.33110 5.42691 5.48553 5.54092 5.54409 5.81110 6.10860 6.22871 6.54151 7.08212 7.20005 7.84782 8.03826 9.19271 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.002016 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.407491 B =13882.946119 C =14444.305010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.110 0.890 4 O -0.374 6.374 5 C 0.097 3.903 6 C -0.132 4.132 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.107 4.107 11 C -0.119 4.119 12 C 0.483 3.517 13 O -0.575 6.575 14 N -0.714 5.714 15 C 0.139 3.861 16 C -0.103 4.103 17 H 0.093 0.907 18 C -0.153 4.153 19 C 0.145 3.855 20 H 0.055 0.945 21 N -0.733 5.733 22 C -0.232 4.232 23 H 0.055 0.945 24 C -0.066 4.066 25 N -0.984 5.984 26 Si 0.957 3.043 27 H -0.274 1.274 28 H -0.299 1.299 29 H -0.251 1.251 30 C -0.134 4.134 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.413 0.587 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.056 0.944 52 H 0.367 0.633 53 H 0.258 0.742 54 H 0.067 0.933 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -2.960 -31.565 33.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.127 0.873 4 O -0.292 6.292 5 C 0.040 3.960 6 C -0.170 4.170 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.144 4.144 11 C -0.156 4.156 12 C 0.270 3.730 13 O -0.454 6.454 14 N -0.368 5.368 15 C 0.015 3.985 16 C -0.122 4.122 17 H 0.111 0.889 18 C -0.194 4.194 19 C 0.035 3.965 20 H 0.073 0.927 21 N -0.374 5.374 22 C -0.363 4.363 23 H 0.073 0.927 24 C -0.258 4.258 25 N -0.634 5.634 26 Si 0.784 3.216 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.175 1.175 30 C -0.173 4.173 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.250 0.750 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.107 0.893 51 H 0.075 0.925 52 H 0.201 0.799 53 H 0.066 0.934 54 H 0.085 0.915 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.720 -3.893 -31.575 33.904 hybrid contribution 0.143 1.199 0.667 1.380 sum 11.863 -2.694 -30.908 33.216 Atomic orbital electron populations 1.21860 0.89657 1.03553 1.04925 1.22183 0.97558 0.96189 0.82890 0.87254 1.88047 1.37598 1.61909 1.41644 1.21176 0.84055 0.94900 0.95893 1.21857 0.98592 0.95969 1.00562 1.21304 0.95561 0.99993 0.98845 1.21925 0.99930 0.95489 0.98076 1.21368 1.02346 0.95002 0.96997 1.21213 0.94721 1.00459 0.98050 1.20496 0.96828 0.97683 1.00621 1.21996 0.79266 0.85555 0.86176 1.90677 1.42136 1.25332 1.87303 1.46037 1.57334 1.28143 1.05261 1.21281 0.98834 0.95604 0.82766 1.22573 0.97105 0.99870 0.92634 0.88866 1.23691 0.96124 1.01421 0.98135 1.21335 0.96123 0.86058 0.92955 0.92679 1.42407 1.42955 1.08479 1.43605 1.19050 1.11038 0.95620 1.10635 0.92681 1.25542 1.01048 1.00089 0.99079 1.69888 1.40481 1.21651 1.31427 0.85383 0.79751 0.79042 0.77432 1.20040 1.22576 1.17514 1.23349 0.97033 1.02182 0.94743 0.88954 0.89042 0.92603 0.93799 0.90622 0.90768 0.92689 0.90915 0.91803 0.91470 0.91272 0.92022 0.91809 0.90934 0.93521 0.91271 0.75014 0.91959 0.91962 0.89320 0.92542 0.79921 0.93360 0.91460 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.53 71.98 0.69 -1.28 16 2 C 0.07 1.29 2.76 29.85 0.08 1.38 16 3 H 0.11 1.37 7.38 -2.39 -0.02 1.35 16 4 O -0.37 -8.15 9.09 -129.99 -1.18 -9.33 16 5 C 0.10 1.74 1.92 28.74 0.06 1.79 16 6 C -0.13 -1.69 5.15 30.22 0.16 -1.53 16 7 C -0.12 -1.29 5.32 30.16 0.16 -1.13 16 8 C -0.12 -1.12 5.85 31.32 0.18 -0.93 16 9 C -0.12 -1.27 5.32 30.14 0.16 -1.11 16 10 C -0.11 -1.45 5.61 30.20 0.17 -1.28 16 11 C -0.12 -2.15 4.81 28.74 0.14 -2.01 16 12 C 0.48 11.48 7.09 87.66 0.62 12.10 16 13 O -0.58 -18.93 16.51 15.98 0.26 -18.67 16 14 N -0.71 -14.21 5.47 -463.06 -2.53 -16.75 16 15 C 0.14 3.10 5.51 86.38 0.48 3.58 16 16 C -0.10 -2.47 3.64 -10.27 -0.04 -2.51 16 17 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.15 -4.38 7.44 31.12 0.23 -4.15 16 19 C 0.14 5.10 4.55 45.52 0.21 5.31 16 20 H 0.05 2.09 8.11 -2.39 -0.02 2.07 16 21 N -0.73 -32.44 5.12 -320.46 -1.64 -34.08 16 22 C -0.23 -12.94 10.45 84.04 0.88 -12.06 16 23 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 24 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 25 N -0.98 -62.33 13.97 21.65 0.30 -62.03 16 26 Si 0.96 43.91 27.73 68.60 1.90 45.81 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 30 C -0.13 -3.56 7.38 31.12 0.23 -3.33 16 31 H 0.09 0.98 7.80 -2.39 -0.02 0.97 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.87 7.11 -2.39 -0.02 0.85 16 35 H 0.08 0.96 6.96 -2.39 -0.02 0.95 16 36 H 0.07 0.84 7.57 -2.38 -0.02 0.83 16 37 H 0.05 0.67 6.63 -2.38 -0.02 0.65 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.68 6.62 -2.38 -0.02 0.66 16 43 H 0.06 0.89 6.98 -2.39 -0.02 0.88 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.22 7.47 -2.39 -0.02 1.20 16 47 H 0.41 6.21 8.19 -92.71 -0.76 5.45 16 48 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.06 1.50 7.85 -2.39 -0.02 1.49 16 50 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 51 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 52 H 0.37 15.37 5.76 -92.71 -0.53 14.84 16 53 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 54 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 55 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -73.16 420.96 1.49 -71.67 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.49 Total: 33.88 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.86 Total: -10.52 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.87 Total: -112.85 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.92 Total: -27.99 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal Total: -73.16 1.49 -71.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691166871.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.206 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds