Wall clock time and date at job start Tue Mar 31 2020 22:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47451 * 2 1 4 4 C 1.53000 * 109.47316 * 240.00084 * 2 1 3 5 5 C 1.50703 * 109.47284 * 65.00042 * 4 2 1 6 6 O 1.21285 * 119.99429 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00437 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00124 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47209 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.51308 * 60.10058 * 9 8 7 11 11 C 1.53290 * 109.51408 * 180.25393 * 9 8 7 12 12 N 1.47152 * 108.38643 * 172.22343 * 11 9 8 13 13 C 1.36934 * 120.98377 * 129.44276 * 12 11 9 14 14 H 1.07998 * 120.00582 * 206.25562 * 13 12 11 15 15 C 1.38822 * 120.00175 * 26.25052 * 13 12 11 16 16 N 1.31619 * 119.99221 * 16.90635 * 15 13 12 17 17 Si 1.86791 * 120.00328 * 196.90206 * 15 13 12 18 18 H 1.48501 * 109.47122 * 90.00326 * 17 15 13 19 19 H 1.48499 * 109.47519 * 209.99979 * 17 15 13 20 20 H 1.48504 * 109.47515 * 330.00518 * 17 15 13 21 21 C 1.47150 * 118.03729 * 309.46728 * 12 11 9 22 22 C 1.53293 * 108.38575 * 50.53198 * 21 12 11 23 23 O 1.42962 * 109.22306 * 307.69975 * 22 21 12 24 24 C 1.53001 * 109.46963 * 120.00631 * 2 1 3 25 25 C 1.53008 * 109.46845 * 299.99781 * 24 2 1 26 26 C 1.52991 * 109.47224 * 180.02562 * 25 24 2 27 27 C 1.53002 * 109.47113 * 59.99770 * 26 25 24 28 28 C 1.53000 * 109.47418 * 300.00072 * 27 26 25 29 29 C 1.52994 * 109.47414 * 180.02562 * 24 2 1 30 30 H 1.08996 * 109.46977 * 299.99594 * 1 2 3 31 31 H 1.09000 * 109.46494 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47527 * 185.00301 * 4 2 1 34 34 H 1.09001 * 109.47150 * 305.00238 * 4 2 1 35 35 H 0.96995 * 119.99441 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.46824 * 300.00252 * 8 7 5 37 37 H 1.09001 * 109.47120 * 60.00110 * 8 7 5 38 38 H 1.09000 * 109.68576 * 291.94922 * 11 9 8 39 39 H 1.08999 * 109.68280 * 52.50354 * 11 9 8 40 40 H 0.97004 * 119.99450 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.68323 * 290.80818 * 21 12 11 42 42 H 1.08998 * 109.71511 * 170.27259 * 21 12 11 43 43 H 1.09001 * 109.51535 * 187.77698 * 22 21 12 44 44 H 1.09000 * 109.51260 * 67.62255 * 22 21 12 45 45 H 1.09001 * 109.47626 * 59.99340 * 24 2 1 46 46 H 1.09001 * 109.46923 * 300.00631 * 25 24 2 47 47 H 1.09002 * 109.46800 * 60.00066 * 25 24 2 48 48 H 1.08996 * 109.47469 * 179.97438 * 26 25 24 49 49 H 1.09004 * 109.47122 * 300.00351 * 26 25 24 50 50 H 1.09005 * 109.47149 * 180.02562 * 27 26 25 51 51 H 1.09003 * 109.47175 * 60.00277 * 27 26 25 52 52 H 1.09003 * 109.47115 * 300.00242 * 28 27 26 53 53 H 1.09002 * 109.46955 * 179.97438 * 28 27 26 54 54 H 1.09001 * 109.47056 * 299.99658 * 29 24 2 55 55 H 1.09001 * 109.47370 * 59.99051 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9855 -0.3913 -3.7002 8 6 1.5984 0.3657 -4.8932 9 6 2.1083 -0.3556 -6.1425 10 1 1.6723 -1.3534 -6.1902 11 6 1.7093 0.4390 -7.3912 12 7 2.3671 -0.1695 -8.5584 13 6 1.6523 -0.4963 -9.6796 14 1 1.9986 -1.2860 -10.3298 15 6 0.4822 0.1875 -9.9807 16 7 0.2287 1.3432 -9.4041 17 14 -0.7320 -0.5324 -11.2040 18 1 -1.7104 -1.3876 -10.4854 19 1 -1.4504 0.5685 -11.8947 20 1 -0.0005 -1.3505 -12.2045 21 6 3.8158 -0.4170 -8.4849 22 6 4.1123 -1.1698 -7.1829 23 8 3.5331 -0.4592 -6.0859 24 6 2.0400 -0.7214 1.2492 25 6 1.5300 -0.0002 2.4985 26 6 2.0404 -0.7211 3.7477 27 6 3.5704 -0.7206 3.7474 28 6 4.0805 -1.4419 2.4982 29 6 3.5700 -0.7209 1.2496 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7995 -1.2056 34 1 1.6055 -1.7198 -1.2952 35 1 2.4894 -1.2151 -3.7907 36 1 0.5121 0.4439 -4.9372 37 1 2.0331 1.3642 -4.8469 38 1 0.6275 0.4028 -7.5192 39 1 2.0326 1.4746 -7.2862 40 1 -0.5891 1.8209 -9.6141 41 1 4.3512 0.5325 -8.4900 42 1 4.1296 -1.0198 -9.3371 43 1 5.1907 -1.2418 -7.0413 44 1 3.6836 -2.1706 -7.2353 45 1 1.6766 -1.7490 1.2492 46 1 1.8933 1.0275 2.4985 47 1 0.4400 -0.0002 2.4984 48 1 1.6775 -0.2071 4.6377 49 1 1.6774 -1.7489 3.7478 50 1 3.9341 -1.2347 4.6372 51 1 3.9335 0.3072 3.7472 52 1 3.7174 -2.4696 2.4983 53 1 5.1705 -1.4411 2.4978 54 1 3.9337 -1.2344 0.3596 55 1 3.9330 0.3069 1.2498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698788331.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:46 Heat of formation + Delta-G solvation = -115.975954 kcal Electronic energy + Delta-G solvation = -30195.239771 eV Core-core repulsion = 26230.392990 eV Total energy + Delta-G solvation = -3964.846780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.11514 -40.17009 -39.49680 -36.50589 -35.96788 -35.43709 -33.27237 -32.61198 -31.72286 -30.47785 -29.28235 -28.63128 -26.86380 -25.08384 -24.27878 -23.31627 -23.09270 -21.79022 -21.29998 -20.62603 -20.53728 -18.93017 -18.13859 -17.51227 -17.13635 -16.88557 -16.43770 -16.26841 -16.05192 -15.55906 -15.51610 -15.10759 -15.07363 -14.91609 -14.71170 -14.60994 -14.44073 -14.22446 -14.10895 -13.74707 -13.24181 -13.19846 -13.04599 -12.98849 -12.70052 -12.63697 -12.53652 -12.30046 -12.18496 -12.09823 -12.01357 -11.96348 -11.89343 -11.86268 -11.52957 -11.31833 -11.22977 -10.94836 -10.82973 -10.66151 -10.59437 -10.54059 -10.04709 -8.77318 -7.92706 -5.40487 1.45582 1.46801 1.55985 1.72823 2.21460 2.47310 2.78990 3.22070 3.49264 3.70604 3.75471 3.85473 3.99683 4.05354 4.06580 4.12207 4.24350 4.27508 4.43686 4.44695 4.49840 4.51336 4.53794 4.60540 4.61307 4.67662 4.72266 4.72879 4.76849 4.80344 4.83605 4.86969 4.96635 4.98975 5.06133 5.06771 5.12962 5.21710 5.24637 5.29713 5.34069 5.37807 5.38744 5.45533 5.47744 5.51082 5.55056 5.58684 5.63987 5.71991 6.25215 6.31622 6.63793 7.03733 7.34356 7.72892 8.26547 9.13055 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.001996 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.602791 B =14024.893342 C =14876.430817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.065 4.065 3 H 0.054 0.946 4 C -0.130 4.130 5 C 0.504 3.496 6 O -0.584 6.584 7 N -0.713 5.713 8 C 0.144 3.856 9 C 0.078 3.922 10 H 0.065 0.935 11 C 0.159 3.841 12 N -0.614 5.614 13 C -0.265 4.265 14 H 0.075 0.925 15 C -0.053 4.053 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.283 1.283 19 H -0.297 1.297 20 H -0.266 1.266 21 C 0.101 3.899 22 C 0.057 3.943 23 O -0.389 6.389 24 C -0.072 4.072 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.120 4.120 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.066 0.934 39 H -0.002 1.002 40 H 0.251 0.749 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.054 0.946 52 H 0.066 0.934 53 H 0.063 0.937 54 H 0.073 0.927 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -10.107 25.076 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.169 4.169 5 C 0.293 3.707 6 O -0.464 6.464 7 N -0.365 5.365 8 C 0.019 3.981 9 C 0.018 3.982 10 H 0.083 0.917 11 C 0.032 3.968 12 N -0.338 5.338 13 C -0.395 4.395 14 H 0.093 0.907 15 C -0.248 4.248 16 N -0.582 5.582 17 Si 0.799 3.201 18 H -0.210 1.210 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.025 4.025 22 C -0.020 4.020 23 O -0.308 6.308 24 C -0.091 4.091 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.157 4.157 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.140 0.860 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.082 0.918 54 H 0.091 0.909 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.836 -9.208 25.232 27.716 hybrid contribution -0.810 0.145 -1.467 1.682 sum 6.026 -9.063 23.765 26.139 Atomic orbital electron populations 1.21953 0.95519 1.01704 1.01729 1.20853 0.95773 0.98862 0.92953 0.92751 1.21872 1.04407 1.00394 0.90230 1.21489 0.78268 0.85514 0.85463 1.90664 1.41817 1.26748 1.87177 1.45886 1.57553 1.28066 1.04996 1.21017 0.99090 0.95059 0.82950 1.22732 0.82173 0.98887 0.94380 0.91739 1.21091 0.98232 0.92622 0.84871 1.44347 1.03241 1.73066 1.13182 1.19572 1.05069 1.12536 1.02334 0.90714 1.25874 1.02359 0.95462 1.01109 1.70193 1.26181 1.14070 1.47776 0.85203 0.78988 0.77189 0.78689 1.20971 1.22392 1.19013 1.21839 0.84653 0.97754 0.98207 1.23085 0.99206 0.94091 0.85642 1.87791 1.19609 1.77579 1.45817 1.21130 0.95437 0.99663 0.92854 1.21630 1.00496 0.98991 0.94299 1.21520 0.95741 1.00828 0.97368 1.21558 0.95665 1.00527 0.98144 1.21514 1.00324 0.99492 0.94167 1.21684 0.94814 1.00652 0.98570 0.92268 0.93816 0.92154 0.86630 0.86607 0.74876 0.91164 0.92872 0.91593 0.98436 0.93979 0.96788 0.90880 0.86031 0.92657 0.90154 0.93022 0.91768 0.91982 0.91612 0.91597 0.92704 0.91485 0.91783 0.90867 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.58 71.98 0.62 -2.52 16 2 C -0.07 -1.21 1.62 -10.79 -0.02 -1.22 16 3 H 0.05 1.26 7.95 -2.39 -0.02 1.25 16 4 C -0.13 -2.23 4.96 29.85 0.15 -2.08 16 5 C 0.50 13.67 7.55 87.66 0.66 14.33 16 6 O -0.58 -21.03 13.96 -3.05 -0.04 -21.08 16 7 N -0.71 -19.08 5.45 -463.06 -2.52 -21.60 16 8 C 0.14 4.97 5.37 86.38 0.46 5.43 16 9 C 0.08 2.89 2.87 30.69 0.09 2.98 16 10 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 11 C 0.16 7.71 4.73 86.35 0.41 8.12 16 12 N -0.61 -30.65 3.05 -697.56 -2.13 -32.78 16 13 C -0.27 -14.36 9.65 84.04 0.81 -13.54 16 14 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 15 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 16 N -0.94 -55.63 11.14 21.65 0.24 -55.39 16 17 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 C 0.10 4.04 6.73 86.35 0.58 4.63 16 22 C 0.06 1.79 6.98 72.08 0.50 2.29 16 23 O -0.39 -13.45 10.13 -148.98 -1.51 -14.96 16 24 C -0.07 -0.97 1.78 -10.79 -0.02 -0.99 16 25 C -0.12 -1.60 4.85 30.59 0.15 -1.45 16 26 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 27 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 28 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 29 C -0.12 -1.48 4.85 30.57 0.15 -1.33 16 30 H 0.06 1.12 6.43 -2.39 -0.02 1.11 16 31 H 0.04 1.20 5.95 -2.39 -0.01 1.19 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.54 6.17 -2.39 -0.01 1.53 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 8.80 8.35 -92.71 -0.77 8.03 16 36 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 43 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.90 6.43 -2.39 -0.02 0.88 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.07 0.79 6.32 -2.39 -0.02 0.77 16 55 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.93 412.34 1.65 -67.28 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.08 Total: 23.37 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 5.51 Total: 8.77 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.41 Total: -109.77 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.55 Total: -36.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.93 1.65 -67.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698788331.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.693 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds