Wall clock time and date at job start Tue Mar 31 2020 23:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99734 * 2 1 4 4 C 1.53001 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47149 * 305.00335 * 4 3 2 6 6 C 1.53003 * 109.46907 * 65.00635 * 4 3 2 7 7 C 1.53000 * 109.47081 * 184.99936 * 4 3 2 8 8 H 1.08998 * 109.47477 * 300.00593 * 7 4 3 9 9 C 1.53003 * 109.46680 * 60.00559 * 7 4 3 10 10 C 1.50701 * 109.47314 * 180.02562 * 7 4 3 11 11 O 1.21289 * 119.99645 * 0.02562 * 10 7 4 12 12 N 1.34772 * 120.00483 * 180.02562 * 10 7 4 13 13 C 1.48105 * 127.84902 * 180.02562 * 12 10 7 14 14 C 1.54310 * 104.72060 * 140.21933 * 13 12 10 15 15 C 1.52992 * 112.07626 * 146.94081 * 14 13 12 16 16 C 1.53758 * 109.07963 * 271.64460 * 14 13 12 17 17 N 1.47194 * 106.40775 * 94.28621 * 16 14 13 18 18 C 1.36943 * 126.70173 * 211.29246 * 17 16 14 19 19 H 1.08003 * 119.99648 * 165.69159 * 18 17 16 20 20 C 1.38804 * 119.99839 * 345.69174 * 18 17 16 21 21 N 1.31622 * 120.00247 * 350.70109 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 170.70063 * 20 18 17 23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18 25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18 26 26 C 1.47206 * 106.59519 * 31.55525 * 17 16 14 27 27 C 1.54032 * 106.26666 * 328.37515 * 26 17 16 28 28 C 1.52992 * 112.77597 * 141.67572 * 27 26 17 29 29 C 1.48115 * 127.83879 * 359.97438 * 12 10 7 30 30 H 1.09006 * 109.47560 * 59.99933 * 1 2 3 31 31 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47642 * 299.99791 * 1 2 3 33 33 H 1.09005 * 109.47197 * 60.00136 * 3 2 1 34 34 H 1.08996 * 109.47399 * 300.00556 * 3 2 1 35 35 H 1.08998 * 109.47138 * 59.99721 * 6 4 3 36 36 H 1.08991 * 109.47424 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46924 * 299.99738 * 6 4 3 38 38 H 1.09001 * 109.47468 * 60.00244 * 9 7 4 39 39 H 1.09000 * 109.46924 * 179.97438 * 9 7 4 40 40 H 1.08999 * 109.47465 * 299.99374 * 9 7 4 41 41 H 1.09002 * 110.38324 * 21.40732 * 13 12 10 42 42 H 1.09001 * 110.38736 * 259.03312 * 13 12 10 43 43 H 1.09004 * 109.47049 * 182.01536 * 15 14 13 44 44 H 1.09002 * 109.47884 * 302.01640 * 15 14 13 45 45 H 1.09005 * 109.47396 * 62.01595 * 15 14 13 46 46 H 1.09001 * 110.06945 * 335.04278 * 16 14 13 47 47 H 1.09004 * 110.06676 * 213.52211 * 16 14 13 48 48 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 49 49 H 1.09001 * 110.06421 * 87.68848 * 26 17 16 50 50 H 1.09000 * 110.06826 * 209.21160 * 26 17 16 51 51 H 1.08998 * 109.46778 * 301.38185 * 28 27 26 52 52 H 1.09003 * 109.46859 * 61.37534 * 28 27 26 53 53 H 1.08997 * 109.47358 * 181.37949 * 28 27 26 54 54 H 1.08993 * 110.39292 * 338.58835 * 29 12 10 55 55 H 1.09002 * 110.38787 * 100.86428 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5687 0.8426 6 6 3.9962 0.5367 -1.3065 7 6 4.1571 2.5771 0.1264 8 1 3.8417 3.1933 -0.7156 9 6 3.6963 3.2252 1.4335 10 6 5.6594 2.4583 0.1264 11 8 6.1814 1.3674 0.0344 12 7 6.4229 3.5642 0.2286 13 6 7.9014 3.6493 0.2458 14 6 8.2323 4.8961 -0.6011 15 6 9.4824 5.6192 -0.0959 16 6 8.3608 4.4821 -2.0763 17 7 7.0413 4.7083 -2.6881 18 6 6.4828 3.9963 -3.7160 19 1 5.4292 4.0954 -3.9315 20 6 7.2709 3.1472 -4.4806 21 7 8.5797 3.1611 -4.3419 22 14 6.4740 1.9847 -5.7067 23 1 5.0001 2.1622 -5.6709 24 1 6.9762 2.2844 -7.0716 25 1 6.8121 0.5830 -5.3515 26 6 6.4420 5.8534 -1.9836 27 6 6.9702 5.7950 -0.5378 28 6 7.2751 7.1794 0.0378 29 6 5.9738 4.9705 0.3482 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6884 1.8465 -0.8899 35 1 3.6808 1.1529 -2.1485 36 1 5.0827 0.4511 -1.3063 37 1 3.5532 -0.4552 -1.3961 38 1 4.0117 2.6091 2.2755 39 1 4.1396 4.2169 1.5233 40 1 2.6097 3.3113 1.4331 41 1 8.3383 2.7578 -0.2041 42 1 8.2626 3.7766 1.2663 43 1 9.6560 6.5098 -0.7000 44 1 9.3391 5.9085 0.9452 45 1 10.3428 4.9544 -0.1731 46 1 8.6302 3.4282 -2.1469 47 1 9.1133 5.0950 -2.5726 48 1 9.1305 2.5680 -4.8765 49 1 6.7470 6.7859 -2.4584 50 1 5.3553 5.7686 -1.9886 51 1 8.0149 7.6782 -0.5883 52 1 6.3606 7.7722 0.0620 53 1 7.6668 7.0741 1.0494 54 1 4.9551 5.0769 -0.0243 55 1 6.0349 5.3018 1.3849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700623500.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:05 Heat of formation + Delta-G solvation = -77.550647 kcal Electronic energy + Delta-G solvation = -33061.206053 eV Core-core repulsion = 29098.025519 eV Total energy + Delta-G solvation = -3963.180534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82818 -40.33274 -38.89815 -36.45032 -36.26034 -34.63793 -33.15156 -32.44521 -31.49958 -28.42887 -28.22198 -27.62147 -26.89749 -26.51358 -26.21710 -25.07238 -23.83009 -21.79420 -21.46017 -20.09600 -19.18145 -18.80943 -18.01857 -17.39422 -16.93838 -16.85580 -16.71707 -16.29180 -15.74369 -15.66883 -15.55806 -14.91384 -14.84540 -14.61740 -14.56318 -14.34971 -14.27536 -14.05281 -13.63924 -13.44050 -13.33600 -13.15706 -13.10694 -12.89122 -12.80317 -12.73664 -12.54847 -12.49809 -12.43532 -12.32011 -12.11847 -11.91664 -11.88870 -11.83601 -11.77156 -11.61052 -11.41600 -11.13486 -10.99941 -10.71661 -10.62037 -10.43296 -9.54496 -8.79776 -7.92599 -5.23794 1.33033 1.38051 1.44192 1.73460 2.08499 2.42829 2.87559 3.28234 3.42535 3.55825 3.67910 3.75284 3.80411 3.93866 3.95225 4.11555 4.19698 4.30456 4.38447 4.40809 4.43376 4.46551 4.50986 4.56593 4.62095 4.63697 4.65092 4.76847 4.81241 4.85796 4.86106 4.88096 4.89749 4.91856 4.93723 4.99258 5.04431 5.11831 5.19299 5.23651 5.26814 5.31246 5.35541 5.37985 5.43809 5.47604 5.48917 5.54755 5.67381 5.83537 6.21263 6.27457 6.75604 7.06086 7.31015 7.76614 8.47308 9.20528 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.005163 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.239764 B = 5422.311015 C = 7364.943908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.071 3.929 4 C -0.061 4.061 5 H 0.068 0.932 6 C -0.150 4.150 7 C -0.092 4.092 8 H 0.097 0.903 9 C -0.143 4.143 10 C 0.534 3.466 11 O -0.590 6.590 12 N -0.609 5.609 13 C 0.126 3.874 14 C -0.090 4.090 15 C -0.116 4.116 16 C 0.192 3.808 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.074 0.926 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.955 3.045 23 H -0.263 1.263 24 H -0.287 1.287 25 H -0.304 1.304 26 C 0.139 3.861 27 C -0.074 4.074 28 C -0.116 4.116 29 C 0.116 3.884 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.030 0.970 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.020 0.980 47 H -0.013 1.013 48 H 0.243 0.757 49 H 0.016 0.984 50 H 0.046 0.954 51 H 0.055 0.945 52 H 0.075 0.925 53 H 0.084 0.916 54 H 0.087 0.913 55 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 7.772 17.079 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.005 4.005 4 C -0.080 4.080 5 H 0.087 0.913 6 C -0.207 4.207 7 C -0.113 4.113 8 H 0.115 0.885 9 C -0.200 4.200 10 C 0.325 3.675 11 O -0.471 6.471 12 N -0.339 5.339 13 C 0.003 3.997 14 C -0.092 4.092 15 C -0.174 4.174 16 C 0.066 3.934 17 N -0.333 5.333 18 C -0.350 4.350 19 H 0.092 0.908 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.784 3.216 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.232 1.232 26 C 0.014 3.986 27 C -0.076 4.076 28 C -0.174 4.174 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.005 0.995 48 H 0.052 0.948 49 H 0.033 0.967 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.103 0.897 54 H 0.106 0.894 55 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.215 6.799 16.843 21.889 hybrid contribution 0.294 -1.214 -1.923 2.293 sum -11.922 5.585 14.921 19.898 Atomic orbital electron populations 1.22924 0.79440 1.03678 1.01015 1.87855 1.21505 1.28767 1.95611 1.22648 0.91628 0.84579 1.01658 1.20751 0.94012 0.94818 0.98391 0.91308 1.21888 1.01604 1.00369 0.96855 1.21173 0.89380 0.98114 1.02642 0.88505 1.21992 1.03407 1.01319 0.93293 1.20674 0.90077 0.82264 0.74508 1.90610 1.75989 1.28199 1.52299 1.48710 1.07046 1.07149 1.71041 1.22281 0.80974 0.96901 0.99569 1.22446 0.96975 0.94616 0.95183 1.21614 0.94308 0.99413 1.02051 1.20930 0.86590 0.97026 0.88861 1.44548 1.17352 1.33629 1.37735 1.19207 0.92372 1.17932 1.05498 0.90794 1.25478 0.95792 1.02936 1.01124 1.70117 1.03776 1.41229 1.44210 0.85351 0.78629 0.78577 0.79019 1.18680 1.21432 1.23219 1.21626 0.96410 0.89317 0.91282 1.22821 0.93669 0.96378 0.94697 1.21604 1.02438 0.92008 1.01328 1.23157 0.98269 0.78595 1.00602 0.93536 0.88907 0.92361 0.90059 0.92791 0.94133 0.93521 0.92686 0.92209 0.89883 0.88822 0.95127 0.88849 0.92014 0.88991 0.93666 0.96119 0.99497 0.94776 0.96668 0.93529 0.92578 0.90560 0.89684 0.89432 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.66 10.24 -148.98 -1.53 -12.19 16 3 C 0.07 1.63 5.10 71.98 0.37 1.99 16 4 C -0.06 -1.83 1.85 -10.79 -0.02 -1.85 16 5 H 0.07 2.23 8.10 -2.39 -0.02 2.22 16 6 C -0.15 -5.70 8.77 71.98 0.63 -5.06 16 7 C -0.09 -2.58 1.65 -11.54 -0.02 -2.59 16 8 H 0.10 2.76 7.95 -2.39 -0.02 2.74 16 9 C -0.14 -2.54 8.60 71.98 0.62 -1.92 16 10 C 0.53 20.12 6.98 87.66 0.61 20.73 16 11 O -0.59 -28.09 13.92 -3.06 -0.04 -28.13 16 12 N -0.61 -20.35 3.31 -803.49 -2.66 -23.01 16 13 C 0.13 4.42 6.05 86.52 0.52 4.95 16 14 C -0.09 -3.06 1.06 -50.77 -0.05 -3.11 16 15 C -0.12 -3.03 7.50 71.98 0.54 -2.49 16 16 C 0.19 9.48 4.70 86.50 0.41 9.89 16 17 N -0.61 -30.80 3.38 -694.95 -2.35 -33.15 16 18 C -0.22 -12.60 10.28 84.03 0.86 -11.74 16 19 H 0.07 4.08 7.85 -2.91 -0.02 4.06 16 20 C -0.06 -3.58 5.38 84.86 0.46 -3.12 16 21 N -0.94 -60.05 10.87 21.65 0.24 -59.82 16 22 Si 0.95 49.20 29.56 68.60 2.03 51.22 16 23 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.30 -16.32 7.11 99.48 0.71 -15.62 16 26 C 0.14 5.23 6.35 86.59 0.55 5.78 16 27 C -0.07 -2.03 1.15 -49.80 -0.06 -2.09 16 28 C -0.12 -2.11 7.65 71.98 0.55 -1.56 16 29 C 0.12 2.75 4.40 87.39 0.38 3.13 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 1.36 6.17 -2.38 -0.01 1.34 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 2.16 5.51 -2.39 -0.01 2.15 16 37 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.21 5.34 -2.39 -0.01 1.20 16 40 H 0.09 1.16 6.32 -2.39 -0.02 1.15 16 41 H 0.03 1.38 7.16 -2.39 -0.02 1.36 16 42 H 0.09 2.58 7.97 -2.39 -0.02 2.56 16 43 H 0.06 1.60 7.10 -2.38 -0.02 1.59 16 44 H 0.09 1.68 7.16 -2.39 -0.02 1.66 16 45 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.02 1.22 6.02 -2.39 -0.01 1.21 16 47 H -0.01 -0.70 7.88 -2.38 -0.02 -0.72 16 48 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 49 H 0.02 0.59 7.93 -2.39 -0.02 0.58 16 50 H 0.05 1.66 7.47 -2.39 -0.02 1.64 16 51 H 0.06 1.13 7.09 -2.39 -0.02 1.12 16 52 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.08 1.12 7.16 -2.39 -0.02 1.10 16 54 H 0.09 1.90 5.93 -2.39 -0.01 1.89 16 55 H 0.11 1.71 7.87 -2.39 -0.02 1.69 16 Total: -1.00 -82.22 406.33 4.14 -78.09 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.85 Total: 14.38 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.60 Total: 12.61 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -4.78 Total: -115.98 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.57 Total: -40.32 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.22 kcal Total: -82.22 4.14 -78.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700623500.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.536 kcal (2) G-P(sol) polarization free energy of solvation -82.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds