Wall clock time and date at job start Tue Mar 31 2020 23:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47050 * 2 1 4 4 O 1.42903 * 109.46940 * 119.99430 * 2 1 3 5 5 C 1.42899 * 114.00429 * 269.99909 * 4 2 1 6 6 C 1.45544 * 108.89436 * 149.99822 * 5 4 2 7 7 C 1.54239 * 112.32720 * 182.64008 * 6 5 4 8 8 C 1.50545 * 108.48693 * 279.88766 * 7 6 5 9 9 C 1.54079 * 112.41469 * 94.26795 * 8 7 6 10 10 C 1.54065 * 112.81461 * 318.27844 * 9 8 7 11 11 C 1.50481 * 112.49491 * 318.28461 * 10 9 8 12 12 C 1.50696 * 109.47322 * 239.99887 * 2 1 3 13 13 O 1.21283 * 119.99794 * 244.99803 * 12 2 1 14 14 N 1.34777 * 120.00079 * 64.99866 * 12 2 1 15 15 C 1.46496 * 120.00052 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47183 * 179.97438 * 15 14 12 17 17 N 1.46501 * 109.46845 * 180.02562 * 16 15 14 18 18 C 1.36934 * 119.99911 * 270.00039 * 17 16 15 19 19 H 1.08003 * 119.99654 * 141.43532 * 18 17 16 20 20 C 1.38807 * 120.00033 * 321.42442 * 18 17 16 21 21 N 1.31621 * 119.99736 * 157.76872 * 20 18 17 22 22 Si 1.86798 * 120.00335 * 337.76770 * 20 18 17 23 23 H 1.48509 * 109.47027 * 95.67982 * 22 20 18 24 24 H 1.48498 * 109.47374 * 215.67834 * 22 20 18 25 25 H 1.48496 * 109.47326 * 335.68331 * 22 20 18 26 26 C 1.46496 * 119.99692 * 90.00612 * 17 16 15 27 27 C 1.53003 * 117.49858 * 183.18533 * 26 17 16 28 28 C 1.53003 * 117.50183 * 114.52813 * 26 17 16 29 29 H 1.08998 * 109.47338 * 60.00175 * 1 2 3 30 30 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47362 * 300.00438 * 1 2 3 32 32 H 1.09004 * 108.86982 * 31.40137 * 5 4 2 33 33 H 1.09000 * 108.89743 * 303.35301 * 6 5 4 34 34 H 1.09000 * 108.88978 * 61.94467 * 6 5 4 35 35 H 1.09001 * 109.62608 * 39.68913 * 7 6 5 36 36 H 1.09000 * 109.62475 * 160.25946 * 7 6 5 37 37 H 1.08991 * 108.92414 * 333.51178 * 8 7 6 38 38 H 1.09004 * 108.83671 * 214.96023 * 8 7 6 39 39 H 1.08994 * 108.81108 * 197.41598 * 9 8 7 40 40 H 1.08996 * 108.81210 * 79.13585 * 9 8 7 41 41 H 1.08989 * 108.87808 * 197.50882 * 10 9 8 42 42 H 1.08995 * 108.87809 * 79.06103 * 10 9 8 43 43 H 1.08997 * 109.62987 * 334.44678 * 11 10 9 44 44 H 1.09002 * 109.78571 * 213.95593 * 11 10 9 45 45 H 0.97005 * 120.00079 * 0.02562 * 14 12 2 46 46 H 1.09001 * 109.47476 * 300.00062 * 15 14 12 47 47 H 1.09004 * 109.46893 * 60.00492 * 15 14 12 48 48 H 1.09001 * 109.47050 * 300.00427 * 16 15 14 49 49 H 1.09004 * 109.46719 * 60.00490 * 16 15 14 50 50 H 0.96999 * 120.00036 * 180.02562 * 21 20 18 51 51 H 1.09002 * 115.55634 * 328.85370 * 26 17 16 52 52 H 1.08995 * 117.49671 * 359.97438 * 27 26 17 53 53 H 1.09006 * 117.50010 * 145.02037 * 27 26 17 54 54 H 1.09002 * 117.50130 * 214.97869 * 28 26 17 55 55 H 1.09001 * 117.49682 * 359.96825 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1830 2.2941 6 6 1.9779 -0.5828 3.5117 7 6 2.1035 0.2848 4.7807 8 6 3.5648 0.4549 5.1000 9 6 4.1493 1.7504 4.5051 10 6 3.6557 2.0253 3.0718 11 6 3.6202 0.7809 2.2264 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1213 14 7 1.7919 -0.1942 -2.4520 15 6 2.2808 -0.8845 -3.6480 16 6 1.8753 -0.0948 -4.8942 17 7 2.3637 -0.7855 -6.0903 18 6 3.6050 -0.4947 -6.5900 19 1 4.2258 -1.2843 -6.9870 20 6 4.0653 0.8148 -6.5865 21 7 5.3576 1.0583 -6.6402 22 14 2.8505 2.2316 -6.5056 23 1 2.6963 2.6716 -5.0956 24 1 3.3544 3.3631 -7.3249 25 1 1.5352 1.7866 -7.0319 26 6 1.5240 -1.7872 -6.7518 27 6 2.1191 -2.5270 -7.9516 28 6 1.0299 -1.4729 -8.1653 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.4731 0.9941 2.2497 33 1 0.9786 -1.0169 3.4783 34 1 2.7108 -1.3881 3.5608 35 1 1.6497 1.2600 4.6039 36 1 1.6028 -0.2095 5.6132 37 1 4.1154 -0.3965 4.7002 38 1 3.6882 0.4771 6.1828 39 1 5.2364 1.6727 4.4937 40 1 3.8657 2.5886 5.1414 41 1 4.3201 2.7511 2.6031 42 1 2.6522 2.4481 3.1194 43 1 4.3405 0.0578 2.6089 44 1 3.8640 1.0295 1.1935 45 1 1.2958 0.6348 -2.5392 46 1 3.3671 -0.9623 -3.6042 47 1 1.8465 -1.8833 -3.6941 48 1 0.7890 -0.0174 -4.9378 49 1 2.3093 0.9041 -4.8484 50 1 5.6793 1.9734 -6.6373 51 1 0.8548 -2.3461 -6.0975 52 1 3.1352 -2.2680 -8.2490 53 1 1.8412 -3.5723 -8.0869 54 1 0.0359 -1.8251 -8.4410 55 1 1.3293 -0.5205 -8.6029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714675784.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:48 Heat of formation + Delta-G solvation = -68.646042 kcal Electronic energy + Delta-G solvation = -30390.243326 eV Core-core repulsion = 26427.448924 eV Total energy + Delta-G solvation = -3962.794401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.26083 -40.21640 -39.03827 -37.73308 -36.40248 -35.03076 -33.64244 -33.18260 -32.84233 -31.37822 -29.39947 -26.44984 -26.01192 -25.38682 -24.77348 -23.64537 -22.93035 -21.75447 -21.56411 -21.31953 -20.16919 -18.79947 -18.33812 -18.01832 -17.43059 -17.27849 -16.78139 -16.59715 -16.22406 -15.85914 -15.62222 -15.45209 -15.07188 -15.06482 -14.64307 -14.36222 -14.17845 -14.14757 -13.97149 -13.84836 -13.56774 -13.35167 -13.29212 -13.21383 -13.07658 -12.68910 -12.55222 -12.49295 -12.20068 -12.10718 -12.05203 -11.83355 -11.75056 -11.45433 -11.42917 -11.33302 -11.26983 -11.19601 -11.01186 -10.84002 -10.64997 -10.45126 -10.12931 -8.70405 -8.22314 -5.64426 1.26115 1.41698 1.53358 1.55541 1.80526 2.39323 2.77529 3.02805 3.22412 3.32366 3.59324 3.70506 3.81269 3.91153 3.99476 4.05368 4.11011 4.16789 4.17809 4.21375 4.27436 4.29607 4.36947 4.37878 4.41209 4.46893 4.51700 4.56380 4.65752 4.78032 4.88424 4.90279 4.94201 4.94660 4.95512 5.01857 5.08449 5.10512 5.18875 5.20893 5.25647 5.29022 5.30037 5.30803 5.34116 5.40042 5.44036 5.53723 5.56117 5.91761 6.16693 6.19018 6.55286 6.94312 7.21758 7.57772 7.97098 8.96716 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.002396 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.508588 B =11685.561325 C =12520.233171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.108 0.892 4 O -0.384 6.384 5 C 0.093 3.907 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.142 4.142 12 C 0.504 3.496 13 O -0.578 6.578 14 N -0.711 5.711 15 C 0.119 3.881 16 C 0.133 3.867 17 N -0.582 5.582 18 C -0.259 4.259 19 H 0.040 0.960 20 C -0.022 4.022 21 N -0.948 5.948 22 Si 0.943 3.057 23 H -0.261 1.261 24 H -0.312 1.312 25 H -0.250 1.250 26 C 0.102 3.898 27 C -0.192 4.192 28 C -0.204 4.204 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.415 0.585 46 H 0.028 0.972 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.263 0.737 51 H 0.126 0.874 52 H 0.066 0.934 53 H 0.111 0.889 54 H 0.114 0.886 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 4.313 22.420 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.304 6.304 5 C 0.037 3.963 6 C -0.158 4.158 7 C -0.140 4.140 8 C -0.161 4.161 9 C -0.154 4.154 10 C -0.152 4.152 11 C -0.180 4.180 12 C 0.291 3.709 13 O -0.457 6.457 14 N -0.365 5.365 15 C -0.008 4.008 16 C 0.007 3.993 17 N -0.302 5.302 18 C -0.389 4.389 19 H 0.058 0.942 20 C -0.218 4.218 21 N -0.591 5.591 22 Si 0.770 3.230 23 H -0.188 1.188 24 H -0.241 1.241 25 H -0.174 1.174 26 C -0.005 4.005 27 C -0.230 4.230 28 C -0.244 4.244 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.252 0.748 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.107 0.893 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.143 0.857 52 H 0.085 0.915 53 H 0.129 0.871 54 H 0.132 0.868 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.081 3.484 22.502 26.772 hybrid contribution 0.639 0.972 -0.742 1.380 sum -13.442 4.456 21.759 25.962 Atomic orbital electron populations 1.22235 0.90913 1.03608 1.05188 1.22000 0.96715 0.96281 0.83659 0.87486 1.88108 1.86627 1.35884 1.19741 1.21310 0.96042 0.93143 0.85839 1.20546 1.02630 0.99046 0.93586 1.21230 0.96725 1.00261 0.95788 1.21411 0.96126 0.97642 1.00937 1.21918 1.00070 0.98059 0.95353 1.21255 1.02544 0.96248 0.95183 1.21874 0.97679 0.98602 0.99807 1.21232 0.78983 0.85212 0.85489 1.90693 1.41817 1.25978 1.87212 1.45828 1.57506 1.28181 1.04996 1.21793 0.97953 0.96735 0.84295 1.21389 0.98969 0.94450 0.84447 1.43598 1.15225 1.45652 1.25692 1.18528 0.90889 0.91728 1.37739 0.94227 1.26194 0.96905 1.00388 0.98333 1.70020 1.14699 1.20698 1.53659 0.85857 0.80744 0.78512 0.77880 1.18774 1.24079 1.17400 1.21534 0.96724 0.94576 0.87687 1.23061 0.98152 0.97368 1.04453 1.23354 0.98418 0.99076 1.03583 0.88838 0.92478 0.88921 0.90146 0.91082 0.92936 0.90268 0.90149 0.93359 0.91056 0.92827 0.90797 0.92038 0.90588 0.92382 0.93233 0.74848 0.95345 0.92186 0.89266 0.93657 0.92780 0.85675 0.91520 0.87115 0.86790 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.46 71.98 0.68 -1.82 16 2 C 0.07 1.71 2.75 29.85 0.08 1.79 16 3 H 0.11 1.93 7.46 -2.38 -0.02 1.91 16 4 O -0.38 -10.30 9.07 -129.99 -1.18 -11.48 16 5 C 0.09 1.75 1.92 28.74 0.06 1.81 16 6 C -0.12 -2.00 4.82 28.74 0.14 -1.87 16 7 C -0.10 -1.16 5.61 30.22 0.17 -0.99 16 8 C -0.12 -1.54 5.32 30.16 0.16 -1.38 16 9 C -0.12 -1.45 5.85 31.32 0.18 -1.27 16 10 C -0.11 -1.64 5.31 30.14 0.16 -1.48 16 11 C -0.14 -2.84 5.16 30.20 0.16 -2.68 16 12 C 0.50 16.55 7.18 87.66 0.63 17.18 16 13 O -0.58 -25.63 16.51 15.95 0.26 -25.36 16 14 N -0.71 -21.22 5.52 -463.06 -2.55 -23.77 16 15 C 0.12 4.51 6.00 86.38 0.52 5.03 16 16 C 0.13 5.06 4.66 86.38 0.40 5.46 16 17 N -0.58 -26.14 2.39 -678.02 -1.62 -27.76 16 18 C -0.26 -14.40 8.95 84.03 0.75 -13.65 16 19 H 0.04 2.51 6.86 -2.91 -0.02 2.49 16 20 C -0.02 -1.23 5.30 84.86 0.45 -0.78 16 21 N -0.95 -58.99 13.97 21.65 0.30 -58.68 16 22 Si 0.94 43.53 25.08 68.60 1.72 45.25 16 23 H -0.26 -10.92 6.69 99.48 0.67 -10.25 16 24 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 25 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 26 C 0.10 3.80 6.56 44.99 0.30 4.10 16 27 C -0.19 -7.11 9.80 30.62 0.30 -6.81 16 28 C -0.20 -7.06 10.36 30.62 0.32 -6.75 16 29 H 0.09 1.05 7.93 -2.39 -0.02 1.03 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.09 0.99 7.90 -2.39 -0.02 0.97 16 32 H 0.08 1.11 6.87 -2.38 -0.02 1.09 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.08 7.46 -2.39 -0.02 1.06 16 35 H 0.08 0.72 6.97 -2.39 -0.02 0.71 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.76 6.63 -2.39 -0.02 0.74 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.85 6.63 -2.39 -0.02 0.83 16 43 H 0.06 1.33 6.98 -2.39 -0.02 1.31 16 44 H 0.05 1.16 7.67 -2.39 -0.02 1.14 16 45 H 0.41 9.00 8.26 -92.70 -0.77 8.24 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 49 H 0.05 1.87 3.40 -2.38 -0.01 1.86 16 50 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 51 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 52 H 0.07 2.98 6.44 -2.39 -0.02 2.96 16 53 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 54 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 55 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -77.00 418.14 2.43 -74.57 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.05 Total: 31.34 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.45 Total: -4.10 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -3.87 Total: -110.22 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.92 Total: -36.84 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.72 Total: 45.25 kcal Total: -77.00 2.43 -74.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714675784.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.923 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds