Wall clock time and date at job start Tue Mar 31 2020 23:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47524 * 2 1 4 4 C 1.53006 * 109.47261 * 120.00503 * 2 1 3 5 5 C 1.52995 * 109.46893 * 64.99851 * 4 2 1 6 6 O 1.42899 * 109.46763 * 180.02562 * 5 4 2 7 7 C 1.42908 * 114.00356 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46630 * 29.99707 * 7 6 5 9 9 C 1.53001 * 109.47025 * 270.00246 * 7 6 5 10 10 C 1.50697 * 109.47278 * 149.99788 * 7 6 5 11 11 O 1.21284 * 119.99879 * 5.00504 * 10 7 6 12 12 N 1.34776 * 119.99856 * 185.00108 * 10 7 6 13 13 C 1.47666 * 134.45946 * 180.02562 * 12 10 7 14 14 C 1.53506 * 85.98338 * 204.31955 * 13 12 10 15 15 C 1.47671 * 134.45863 * 0.02562 * 12 10 7 16 16 C 1.52669 * 113.57504 * 90.99991 * 14 13 12 17 17 C 1.53324 * 109.21618 * 188.89505 * 16 14 13 18 18 N 1.46884 * 108.76515 * 307.56955 * 17 16 14 19 19 C 1.36940 * 120.49617 * 235.62940 * 18 17 16 20 20 H 1.08000 * 119.99861 * 28.40769 * 19 18 17 21 21 C 1.38812 * 120.00113 * 208.40514 * 19 18 17 22 22 N 1.31615 * 119.99692 * 17.64043 * 21 19 18 23 23 Si 1.86794 * 119.99923 * 197.63264 * 21 19 18 24 24 H 1.48502 * 109.46912 * 90.00454 * 23 21 19 25 25 H 1.48497 * 109.47357 * 210.00169 * 23 21 19 26 26 H 1.48502 * 109.47673 * 330.00522 * 23 21 19 27 27 C 1.46895 * 119.00846 * 55.60742 * 18 17 16 28 28 C 1.52801 * 113.65666 * 222.22553 * 14 13 12 29 29 H 1.08997 * 109.46927 * 299.99443 * 1 2 3 30 30 H 1.08991 * 109.47239 * 59.99862 * 1 2 3 31 31 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46997 * 239.99802 * 2 1 3 33 33 H 1.08998 * 109.47442 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46894 * 300.00600 * 3 2 1 35 35 H 1.09008 * 109.46622 * 59.99835 * 3 2 1 36 36 H 1.08994 * 109.46454 * 304.99930 * 4 2 1 37 37 H 1.08994 * 109.47017 * 184.99907 * 4 2 1 38 38 H 1.08993 * 109.47432 * 60.00176 * 5 4 2 39 39 H 1.09002 * 109.47467 * 299.99221 * 5 4 2 40 40 H 1.08999 * 109.47337 * 59.99232 * 9 7 6 41 41 H 1.08999 * 109.47060 * 179.97438 * 9 7 6 42 42 H 1.09000 * 109.46976 * 299.99248 * 9 7 6 43 43 H 1.08998 * 113.78859 * 90.04628 * 13 12 10 44 44 H 1.09006 * 113.78620 * 318.58888 * 13 12 10 45 45 H 1.09000 * 113.78888 * 41.40919 * 15 12 10 46 46 H 1.08995 * 113.78601 * 269.94524 * 15 12 10 47 47 H 1.08994 * 109.52299 * 68.95203 * 16 14 13 48 48 H 1.09003 * 109.51992 * 308.83210 * 16 14 13 49 49 H 1.09003 * 109.58914 * 67.35232 * 17 16 14 50 50 H 1.09003 * 109.58674 * 187.64053 * 17 16 14 51 51 H 0.97008 * 119.99796 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.58790 * 64.17487 * 27 18 17 53 53 H 1.09007 * 109.58785 * 184.60746 * 27 18 17 54 54 H 1.09000 * 109.50343 * 51.23869 * 28 14 13 55 55 H 1.09000 * 109.55548 * 291.09916 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6353 -2.1955 1.1878 6 8 2.1111 -2.8691 2.3548 7 6 1.7842 -4.2596 2.3973 8 1 1.7250 -4.6501 1.3814 9 6 0.4349 -4.4452 3.0944 10 6 2.8502 -5.0032 3.1601 11 8 3.7483 -4.3917 3.6991 12 7 2.8054 -6.3476 3.2433 13 6 3.6519 -7.3728 3.8860 14 6 3.0861 -8.3418 2.8384 15 6 1.8903 -7.3859 2.7284 16 6 3.9242 -8.4216 1.5648 17 6 3.1635 -9.2339 0.5102 18 7 2.7633 -10.5178 1.1008 19 6 3.1242 -11.6982 0.5076 20 1 4.0288 -11.7529 -0.0799 21 6 2.3273 -12.8243 0.6614 22 7 1.0808 -12.6984 1.0645 23 14 3.0242 -14.5185 0.2960 24 1 3.6277 -15.0821 1.5302 25 1 1.9346 -15.4111 -0.1743 26 1 4.0643 -14.4092 -0.7583 27 6 1.9706 -10.5169 2.3375 28 6 2.7231 -9.7137 3.4050 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6054 -0.2619 2.1369 37 1 3.1263 -0.6445 1.2951 38 1 2.0698 -2.6550 0.3001 39 1 0.5489 -2.2725 1.1420 40 1 -0.3361 -3.9073 2.5428 41 1 0.1853 -5.5057 3.1265 42 1 0.4941 -4.0547 4.1103 43 1 3.3567 -7.6090 4.9083 44 1 4.7212 -7.1883 3.7822 45 1 1.5593 -7.2117 1.7046 46 1 1.0716 -7.6260 3.4068 47 1 4.8744 -8.9085 1.7840 48 1 4.1089 -7.4161 1.1867 49 1 2.2764 -8.6842 0.1954 50 1 3.8086 -9.4103 -0.3505 51 1 0.5240 -13.4854 1.1723 52 1 1.0008 -10.0562 2.1496 53 1 1.8303 -11.5413 2.6824 54 1 2.0879 -9.5888 4.2819 55 1 3.6326 -10.2444 3.6864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717129650.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:36 Heat of formation + Delta-G solvation = -61.478788 kcal Electronic energy + Delta-G solvation = -30520.805904 eV Core-core repulsion = 26558.322298 eV Total energy + Delta-G solvation = -3962.483606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.93872 -40.16609 -38.82314 -37.46283 -37.06330 -34.29683 -33.09013 -31.97266 -31.28808 -30.04640 -28.54820 -28.01616 -27.28491 -26.18370 -24.93281 -23.93973 -23.79116 -22.39582 -20.99813 -20.28682 -19.54168 -18.45645 -18.12528 -17.89503 -16.99834 -16.80595 -16.67106 -16.58240 -15.82514 -15.63360 -15.37731 -15.11230 -15.09812 -14.76796 -14.74102 -14.44063 -14.12015 -13.96845 -13.77023 -13.56816 -13.36810 -13.17828 -13.10829 -13.02515 -12.96821 -12.89223 -12.66826 -12.56368 -12.43095 -12.30501 -12.23519 -11.98263 -11.78490 -11.72132 -11.59075 -11.52120 -11.36620 -11.23520 -11.21387 -10.84847 -10.49546 -10.37988 -9.73559 -8.59924 -7.83031 -5.26983 1.47593 1.48838 1.51397 1.58504 1.59476 2.54572 2.66607 3.26035 3.33885 3.46110 3.73334 3.81696 3.85966 3.90039 3.96518 4.02036 4.03557 4.07650 4.23200 4.28955 4.40882 4.42475 4.51908 4.52488 4.57351 4.59991 4.63052 4.70283 4.72888 4.77944 4.81473 4.82179 4.85629 4.91948 4.97311 5.01193 5.06950 5.08289 5.10348 5.11896 5.15290 5.21728 5.30704 5.37014 5.40693 5.44618 5.48719 5.59646 5.71019 5.86284 6.10703 6.45525 6.64190 7.07082 7.21750 7.93671 8.42891 9.21974 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.002152 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.259297 B =13010.430164 C =13622.486976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.110 4.110 5 C 0.053 3.947 6 O -0.388 6.388 7 C 0.078 3.922 8 H 0.101 0.899 9 C -0.162 4.162 10 C 0.529 3.471 11 O -0.580 6.580 12 N -0.635 5.635 13 C 0.115 3.885 14 C -0.074 4.074 15 C 0.115 3.885 16 C -0.096 4.096 17 C 0.147 3.853 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.060 0.940 21 C -0.046 4.046 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.273 1.273 27 C 0.176 3.824 28 C -0.112 4.112 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.048 0.952 51 H 0.249 0.751 52 H 0.010 0.990 53 H 0.053 0.947 54 H 0.081 0.919 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 21.572 1.072 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.148 4.148 5 C -0.022 4.022 6 O -0.307 6.307 7 C 0.017 3.983 8 H 0.119 0.881 9 C -0.219 4.219 10 C 0.319 3.681 11 O -0.460 6.460 12 N -0.370 5.370 13 C -0.007 4.007 14 C -0.075 4.075 15 C -0.007 4.007 16 C -0.135 4.135 17 C 0.021 3.979 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.078 0.922 21 C -0.242 4.242 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.198 1.198 27 C 0.051 3.949 28 C -0.152 4.152 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.028 0.972 53 H 0.072 0.928 54 H 0.099 0.901 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.848 22.112 1.472 22.343 hybrid contribution 0.273 -1.312 -0.325 1.379 sum -2.575 20.800 1.147 20.990 Atomic orbital electron populations 1.21924 0.94371 1.02182 1.02316 1.21048 0.96590 0.96520 0.96889 1.21823 1.00967 0.95265 1.02320 1.21559 1.01238 0.92731 0.99251 1.22899 0.99289 0.93372 0.86682 1.87991 1.79206 1.19747 1.43737 1.21860 0.93230 0.82907 1.00258 0.88116 1.22188 0.94341 1.04012 1.01403 1.20637 0.86176 0.80689 0.80569 1.90669 1.38480 1.67459 1.49421 1.50074 1.30105 1.03154 1.53650 1.23402 0.96461 0.82925 0.97883 1.21867 0.96009 0.93985 0.95599 1.23494 0.94016 0.82276 1.00867 1.21589 0.98102 0.99245 0.94606 1.20970 0.96189 0.86453 0.94272 1.44262 1.62902 1.00947 1.25016 1.19437 1.02872 0.88399 1.28234 0.92211 1.25654 0.95014 1.01689 1.01821 1.70147 1.06015 1.28729 1.52552 0.85400 0.77278 0.80727 0.77827 1.21396 1.22298 1.19793 1.20634 0.91072 0.98501 0.84740 1.21945 1.00702 0.94069 0.98462 0.92515 0.91819 0.92305 0.90813 0.92873 0.91618 0.92544 0.91463 0.92370 0.92850 0.91124 0.89231 0.89725 0.92357 0.88045 0.90923 0.89248 0.87425 0.92458 0.91750 0.95851 0.93354 0.94148 0.97181 0.92844 0.90096 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 71.98 0.64 -0.97 16 2 C -0.09 -1.15 2.92 -10.79 -0.03 -1.19 16 3 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 4 C -0.11 -1.86 5.05 30.59 0.15 -1.70 16 5 C 0.05 0.98 5.50 71.98 0.40 1.37 16 6 O -0.39 -10.14 9.53 -129.99 -1.24 -11.38 16 7 C 0.08 1.82 2.92 29.85 0.09 1.90 16 8 H 0.10 1.95 7.79 -2.39 -0.02 1.93 16 9 C -0.16 -2.88 9.44 71.98 0.68 -2.20 16 10 C 0.53 15.95 7.41 87.66 0.65 16.60 16 11 O -0.58 -22.90 17.24 15.95 0.27 -22.62 16 12 N -0.63 -16.60 3.42 -842.39 -2.88 -19.49 16 13 C 0.12 2.94 7.97 86.32 0.69 3.63 16 14 C -0.07 -2.02 0.78 -51.99 -0.04 -2.06 16 15 C 0.12 2.68 6.06 86.31 0.52 3.20 16 16 C -0.10 -2.97 5.20 30.59 0.16 -2.81 16 17 C 0.15 5.52 6.38 86.41 0.55 6.07 16 18 N -0.61 -28.08 2.96 -698.75 -2.07 -30.15 16 19 C -0.26 -13.59 9.56 84.03 0.80 -12.78 16 20 H 0.06 3.12 7.89 -2.91 -0.02 3.10 16 21 C -0.05 -2.46 4.90 84.86 0.42 -2.05 16 22 N -0.93 -52.08 11.21 21.65 0.24 -51.84 16 23 Si 0.96 43.54 29.59 68.60 2.03 45.57 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.18 7.50 5.25 86.41 0.45 7.95 16 28 C -0.11 -3.54 5.26 30.64 0.16 -3.38 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.61 6.57 -2.39 -0.02 0.59 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.07 1.01 6.29 -2.39 -0.02 1.00 16 40 H 0.09 1.22 7.87 -2.39 -0.02 1.20 16 41 H 0.08 1.33 6.65 -2.39 -0.02 1.31 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 44 H 0.07 1.96 8.09 -2.38 -0.02 1.94 16 45 H 0.09 2.01 7.44 -2.39 -0.02 1.99 16 46 H 0.11 2.15 7.98 -2.39 -0.02 2.13 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 49 H 0.02 0.86 7.52 -2.39 -0.02 0.84 16 50 H 0.05 1.85 7.93 -2.39 -0.02 1.84 16 51 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 52 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 53 H 0.05 2.68 5.97 -2.38 -0.01 2.67 16 54 H 0.08 2.12 8.12 -2.39 -0.02 2.11 16 55 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.02 424.25 4.14 -63.88 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.83 Total: 15.44 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.96 Total: 10.60 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.71 Total: -101.48 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.96 Total: -34.00 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.02 4.14 -63.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717129650.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.397 kcal (2) G-P(sol) polarization free energy of solvation -68.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds