Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47268 * 2 1 4 4 N 1.46499 * 109.47344 * 119.99987 * 2 1 3 5 5 C 1.36939 * 119.99902 * 274.99800 * 4 2 1 6 6 H 1.07998 * 120.00018 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00010 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47181 * 60.00289 * 9 7 5 11 11 H 1.48499 * 109.47089 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47137 * 300.00321 * 9 7 5 13 13 C 1.53000 * 109.47397 * 240.00009 * 2 1 3 14 14 H 1.09002 * 109.54909 * 65.12172 * 13 2 1 15 15 C 1.53290 * 109.51514 * 185.25033 * 13 2 1 16 16 N 1.47158 * 108.38592 * 172.22700 * 15 13 2 17 17 C 1.34777 * 120.98214 * 129.48657 * 16 15 13 18 18 O 1.21284 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99951 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47264 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47002 * 60.00027 * 20 19 17 22 22 C 1.52996 * 109.47016 * 300.00200 * 20 19 17 23 23 C 1.52999 * 109.47016 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47145 * 59.99868 * 23 22 20 25 25 C 1.53000 * 109.46939 * 299.99978 * 24 23 22 26 26 C 1.52992 * 109.47006 * 179.97438 * 20 19 17 27 27 C 1.47150 * 118.03117 * 309.46485 * 16 15 13 28 28 C 1.53296 * 108.38576 * 50.53704 * 27 16 15 29 29 O 1.42953 * 109.22045 * 307.69415 * 28 27 16 30 30 H 1.08999 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47030 * 299.99791 * 1 2 3 32 32 H 1.08995 * 109.47430 * 60.00380 * 1 2 3 33 33 H 0.96993 * 120.00017 * 95.00406 * 4 2 1 34 34 H 0.97000 * 120.00256 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.68287 * 291.95087 * 15 13 2 36 36 H 1.09002 * 109.68578 * 52.46602 * 15 13 2 37 37 H 1.09009 * 109.46822 * 300.00233 * 19 17 16 38 38 H 1.08999 * 109.47504 * 59.99644 * 19 17 16 39 39 H 1.08997 * 109.47266 * 60.00093 * 21 20 19 40 40 H 1.08996 * 109.47009 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47073 * 299.99716 * 21 20 19 42 42 H 1.09006 * 109.46640 * 299.99957 * 22 20 19 43 43 H 1.08998 * 109.47263 * 59.99690 * 22 20 19 44 44 H 1.08995 * 109.46949 * 299.99706 * 23 22 20 45 45 H 1.09001 * 109.47270 * 179.97438 * 23 22 20 46 46 H 1.09003 * 109.47134 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47620 * 59.99647 * 24 23 22 48 48 H 1.09003 * 109.47296 * 299.99831 * 25 24 23 49 49 H 1.09004 * 109.47240 * 179.97438 * 25 24 23 50 50 H 1.09009 * 109.47685 * 299.99760 * 26 20 19 51 51 H 1.08999 * 109.47485 * 59.99815 * 26 20 19 52 52 H 1.08993 * 109.68655 * 290.80879 * 27 16 15 53 53 H 1.09005 * 109.67857 * 170.26014 * 27 16 15 54 54 H 1.09003 * 109.51253 * 67.61928 * 28 27 16 55 55 H 1.08997 * 109.50986 * 187.76970 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6114 -0.6619 3.5092 8 7 2.9244 -1.9389 3.4501 9 14 2.7892 0.2699 5.1185 10 1 1.4667 0.8066 5.5284 11 1 3.2984 -0.6485 6.1685 12 1 3.7445 1.3924 4.9376 13 6 2.0400 -0.7212 -1.2492 14 1 1.7542 -0.1582 -2.1377 15 6 3.5672 -0.8373 -1.1858 16 7 4.0142 -1.6931 -2.2964 17 6 4.9984 -1.2947 -3.1265 18 8 5.5294 -0.2165 -2.9641 19 6 5.4392 -2.1891 -4.2565 20 6 6.5607 -1.5050 -5.0407 21 6 7.7451 -1.2386 -4.1095 22 6 6.0504 -0.1793 -5.6089 23 6 7.1722 0.5051 -6.3926 24 6 7.6202 -0.4028 -7.5398 25 6 8.1305 -1.7285 -6.9715 26 6 7.0086 -2.4134 -6.1874 27 6 3.3550 -2.9967 -2.4735 28 6 1.8381 -2.7754 -2.4742 29 8 1.4706 -2.0311 -1.3104 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2478 -2.3962 4.2421 35 1 4.0149 0.1519 -1.2815 36 1 3.8624 -1.2834 -0.2361 37 1 5.8023 -3.1339 -3.8516 38 1 4.5956 -2.3787 -4.9201 39 1 8.1086 -2.1831 -3.7046 40 1 8.5439 -0.7509 -4.6680 41 1 7.4263 -0.5916 -3.2922 42 1 5.2066 -0.3692 -6.2723 43 1 5.7316 0.4676 -4.7916 44 1 8.0156 0.6949 -5.7288 45 1 6.8085 1.4494 -6.7978 46 1 8.4197 0.0846 -8.0978 47 1 6.7768 -0.5927 -8.2036 48 1 8.9740 -1.5386 -6.3077 49 1 8.4493 -2.3755 -7.7888 50 1 7.3723 -3.3577 -5.7823 51 1 6.1650 -2.6037 -6.8510 52 1 3.6287 -3.6609 -1.6538 53 1 3.6622 -3.4375 -3.4219 54 1 1.5516 -2.2198 -3.3672 55 1 1.3296 -3.7394 -2.4655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717614659.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = -101.736016 kcal Electronic energy + Delta-G solvation = -31650.387275 eV Core-core repulsion = 27686.157985 eV Total energy + Delta-G solvation = -3964.229290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.76809 -40.43006 -38.99241 -37.08864 -35.72919 -34.26397 -33.99630 -31.71211 -31.54557 -30.18484 -29.69886 -28.08132 -27.44142 -25.81944 -24.92242 -23.68774 -23.46298 -22.13907 -21.19354 -20.06490 -19.32812 -19.17933 -18.22025 -17.56309 -17.01176 -16.75417 -16.41779 -16.21347 -15.97847 -15.88917 -15.49721 -15.23518 -15.10067 -14.99927 -14.73538 -14.47262 -14.29221 -13.98457 -13.76526 -13.51738 -13.29765 -13.08447 -12.98638 -12.82197 -12.73573 -12.64429 -12.50814 -12.47999 -12.46767 -12.26043 -12.22591 -11.80952 -11.79074 -11.75526 -11.67910 -11.48603 -11.21322 -10.99377 -10.94205 -10.92289 -10.83818 -10.26438 -9.50524 -8.95147 -7.90470 -5.17578 1.46855 1.49515 1.55091 1.65336 1.91656 2.57449 2.82993 3.43453 3.50995 3.67305 3.73371 3.81930 3.94614 3.95958 4.01934 4.10215 4.18306 4.22754 4.31190 4.35506 4.37323 4.44182 4.51019 4.55425 4.57523 4.64246 4.68634 4.70052 4.74185 4.81609 4.83437 4.87747 4.88561 4.95150 5.04080 5.06213 5.11179 5.16787 5.20045 5.22355 5.25207 5.32281 5.35620 5.41306 5.46975 5.52369 5.53020 5.61492 5.66128 5.75295 6.28385 6.33094 6.45134 7.22513 7.38114 8.13909 8.39276 9.32609 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.002689 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.648512 B =10410.082644 C =11047.499329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.172 3.828 3 H 0.056 0.944 4 N -0.726 5.726 5 C -0.236 4.236 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.281 1.281 13 C 0.095 3.905 14 H 0.075 0.925 15 C 0.097 3.903 16 N -0.617 5.617 17 C 0.507 3.493 18 O -0.567 6.567 19 C -0.125 4.125 20 C -0.038 4.038 21 C -0.154 4.154 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.103 4.103 27 C 0.069 3.931 28 C 0.041 3.959 29 O -0.386 6.386 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.068 0.932 53 H 0.133 0.867 54 H 0.068 0.932 55 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -3.976 -26.463 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 H 0.074 0.926 4 N -0.367 5.367 5 C -0.368 4.368 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.797 3.203 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.208 1.208 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.027 4.027 16 N -0.350 5.350 17 C 0.298 3.702 18 O -0.447 6.447 19 C -0.164 4.164 20 C -0.039 4.039 21 C -0.211 4.211 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.140 4.140 27 C -0.053 4.053 28 C -0.036 4.036 29 O -0.304 6.304 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.209 0.791 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.086 0.914 53 H 0.151 0.849 54 H 0.086 0.914 55 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.233 -3.347 -26.123 26.851 hybrid contribution 0.385 0.347 1.530 1.615 sum 5.618 -3.000 -24.593 25.405 Atomic orbital electron populations 1.22138 0.96951 1.01147 1.00397 1.20501 0.93748 0.94504 0.84935 0.92606 1.42493 1.78008 1.10402 1.05753 1.19575 1.34715 0.94081 0.88420 0.90806 1.25473 1.03239 0.96836 1.01180 1.69817 1.52672 1.10090 1.29232 0.85294 0.77861 0.77301 0.79809 1.20474 1.22356 1.20755 1.22558 0.90796 0.84805 0.98275 0.90764 1.21947 0.95444 0.95947 0.89339 1.48395 1.37145 1.19683 1.29804 1.21466 0.78064 0.87392 0.83303 1.90581 1.55404 1.25090 1.73617 1.21884 1.00885 0.98769 0.94872 1.20246 0.93669 0.95252 0.94711 1.22138 0.97921 1.01257 0.99754 1.21750 0.97860 0.96596 0.99285 1.21534 0.98317 0.98400 0.97429 1.21520 1.00891 0.95758 0.97079 1.21578 0.98070 0.96511 0.99633 1.21579 0.98989 0.97629 0.95848 1.22688 0.93880 0.83897 1.04792 1.23222 0.93832 0.98204 0.88319 1.88059 1.70904 1.27211 1.44271 0.93485 0.94441 0.91489 0.79073 0.94258 0.90621 0.92785 0.87166 0.86280 0.93219 0.92134 0.93223 0.92082 0.92342 0.92995 0.92616 0.91856 0.91521 0.92440 0.90819 0.91021 0.90637 0.91385 0.84947 0.91400 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.29 71.98 0.67 -4.68 16 2 C 0.17 6.93 2.80 44.99 0.13 7.05 16 3 H 0.06 2.26 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -36.94 4.24 -322.95 -1.37 -38.31 16 5 C -0.24 -13.25 9.93 84.03 0.83 -12.42 16 6 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 8 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 C 0.09 3.20 2.57 30.69 0.08 3.28 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.10 3.53 5.82 86.35 0.50 4.03 16 16 N -0.62 -17.30 3.02 -817.34 -2.47 -19.77 16 17 C 0.51 13.76 7.12 87.66 0.62 14.38 16 18 O -0.57 -19.76 10.82 -3.04 -0.03 -19.79 16 19 C -0.12 -2.11 3.14 29.85 0.09 -2.02 16 20 C -0.04 -0.69 0.51 -52.19 -0.03 -0.71 16 21 C -0.15 -3.44 7.48 71.98 0.54 -2.90 16 22 C -0.12 -2.40 4.43 30.59 0.14 -2.27 16 23 C -0.12 -2.18 5.65 30.59 0.17 -2.00 16 24 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 25 C -0.12 -1.52 5.65 30.61 0.17 -1.34 16 26 C -0.10 -1.28 4.74 30.61 0.14 -1.13 16 27 C 0.07 1.41 6.54 86.35 0.56 1.98 16 28 C 0.04 0.86 6.98 72.08 0.50 1.37 16 29 O -0.39 -12.50 9.24 -148.98 -1.38 -13.87 16 30 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.38 20.91 7.07 -92.71 -0.66 20.25 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.08 2.99 7.08 -2.39 -0.02 2.98 16 36 H 0.05 2.42 6.92 -2.39 -0.02 2.41 16 37 H 0.11 1.51 8.02 -2.38 -0.02 1.49 16 38 H 0.12 1.35 7.66 -2.39 -0.02 1.33 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.26 4.80 -2.39 -0.01 1.25 16 41 H 0.05 1.49 5.51 -2.38 -0.01 1.47 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.06 1.63 5.51 -2.39 -0.01 1.61 16 44 H 0.05 1.06 6.43 -2.39 -0.02 1.05 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 49 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.13 1.49 6.05 -2.38 -0.01 1.47 16 54 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 55 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -71.46 402.59 3.05 -68.41 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.21 Total: 36.60 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.78 Total: -2.69 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.56 Total: -117.92 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.41 Total: -33.67 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -71.46 3.05 -68.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614659.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.331 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds