Wall clock time and date at job start Tue Mar 31 2020 23:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 C 1.53001 * 109.47142 * 119.99831 * 2 1 3 5 5 O 1.42899 * 109.46897 * 175.00418 * 4 2 1 6 6 C 1.42905 * 114.00017 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.46798 * 330.00325 * 6 5 4 8 8 C 1.52999 * 109.46909 * 89.99734 * 6 5 4 9 9 C 1.50703 * 109.47027 * 209.99706 * 6 5 4 10 10 O 1.21275 * 120.00111 * 355.00399 * 9 6 5 11 11 N 1.34778 * 119.99612 * 174.99970 * 9 6 5 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 6 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 6 29 29 H 1.09000 * 109.46688 * 299.99808 * 1 2 3 30 30 H 1.08993 * 109.47037 * 60.00405 * 1 2 3 31 31 H 1.09004 * 109.46793 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47090 * 240.00236 * 2 1 3 33 33 H 1.08999 * 109.47116 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47034 * 300.00134 * 3 2 1 35 35 H 1.09000 * 109.47124 * 59.99773 * 3 2 1 36 36 H 1.08990 * 109.47256 * 55.00288 * 4 2 1 37 37 H 1.09002 * 109.47059 * 294.99838 * 4 2 1 38 38 H 1.09002 * 109.47169 * 60.00218 * 8 6 5 39 39 H 1.08997 * 109.47474 * 179.97438 * 8 6 5 40 40 H 1.08996 * 109.47461 * 300.00106 * 8 6 5 41 41 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 42 42 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 43 43 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 44 44 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 45 45 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 46 46 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 47 47 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 48 48 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 49 49 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 50 50 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 51 51 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 52 52 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 53 53 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 54 54 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 55 55 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 3.4642 -0.8236 1.1920 6 6 4.0452 -1.4844 2.3181 7 1 3.4252 -1.3150 3.1984 8 6 4.1340 -2.9860 2.0383 9 6 5.4274 -0.9366 2.5639 10 8 5.9068 -0.1322 1.7933 11 7 6.1307 -1.3405 3.6404 12 6 7.4795 -0.8148 3.8915 13 6 7.5227 -0.2293 5.3081 14 6 7.0366 -1.2729 6.3023 15 6 7.9920 -2.4854 6.3242 16 6 9.1092 -2.0258 7.2867 17 7 8.5513 -0.9524 8.1234 18 6 9.2288 -0.2636 9.0938 19 1 8.7930 0.6226 9.5310 20 6 10.4757 -0.7045 9.5156 21 7 11.2482 0.0890 10.2269 22 14 11.0571 -2.4238 9.0737 23 1 12.3537 -2.6955 9.7446 24 1 10.0495 -3.4177 9.5230 25 1 11.2303 -2.5248 7.6023 26 6 7.1391 -0.7447 7.7490 27 6 5.6155 -1.7197 5.9952 28 6 5.5613 -2.3140 4.5822 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6055 -1.7197 1.2952 37 1 1.7517 -0.1582 2.1370 38 1 4.7539 -3.1555 1.1579 39 1 4.5775 -3.4900 2.8970 40 1 3.1343 -3.3822 1.8605 41 1 7.7086 -0.0341 3.1661 42 1 8.2080 -1.6212 3.8068 43 1 6.8783 0.6484 5.3584 44 1 8.5459 0.0564 5.5523 45 1 8.3945 -2.6776 5.3297 46 1 7.4859 -3.3685 6.7142 47 1 9.9577 -1.6479 6.7163 48 1 9.4238 -2.8595 7.9145 49 1 10.9791 1.0058 10.3941 50 1 6.4837 -1.3120 8.4100 51 1 6.8891 0.3157 7.7839 52 1 5.3074 -2.4743 6.7187 53 1 4.9441 -0.8630 6.0551 54 1 4.5260 -2.5216 4.3122 55 1 6.1419 -3.2359 4.5507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732331234.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:38 Heat of formation + Delta-G solvation = -78.376291 kcal Electronic energy + Delta-G solvation = -31272.733625 eV Core-core repulsion = 27309.517288 eV Total energy + Delta-G solvation = -3963.216337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.82111 -40.39126 -39.00246 -37.38517 -36.11954 -35.01774 -33.39430 -32.70047 -31.37239 -30.61621 -28.69741 -28.02759 -27.19036 -25.82496 -25.13760 -24.19373 -23.68003 -22.25077 -21.35212 -20.93271 -19.86233 -18.94308 -18.32522 -17.70723 -17.07926 -16.98882 -16.83635 -16.66682 -16.00316 -15.66797 -15.51659 -15.14043 -15.04341 -15.01618 -14.69874 -14.59010 -14.40161 -14.16138 -13.91822 -13.57309 -13.41543 -13.30135 -13.19742 -13.07698 -13.02790 -12.90489 -12.74228 -12.60408 -12.41581 -12.20170 -11.97614 -11.90442 -11.80215 -11.64556 -11.57676 -11.49392 -11.42911 -11.30272 -10.96552 -10.86300 -10.61628 -10.41752 -9.66031 -9.05301 -8.65186 -5.46416 1.39994 1.49882 1.54117 1.72275 1.72753 2.55880 2.79394 3.12445 3.33236 3.42528 3.53573 3.71771 3.80693 3.85505 3.89601 4.02503 4.04787 4.09258 4.12839 4.21145 4.23102 4.31029 4.44774 4.47503 4.56940 4.60655 4.63253 4.68145 4.70892 4.71953 4.74216 4.76069 4.80662 4.85659 4.87843 4.90211 4.98635 5.04239 5.05422 5.07582 5.09056 5.22431 5.24066 5.26684 5.36740 5.40301 5.41697 5.42050 5.52655 5.59500 6.10805 6.13626 6.41533 6.83679 7.13142 7.46924 8.11502 8.87581 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027266 B = 0.002327 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.661911 B =12028.166437 C =12227.991532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.059 3.941 5 O -0.387 6.387 6 C 0.073 3.927 7 H 0.111 0.889 8 C -0.172 4.172 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.601 5.601 12 C 0.120 3.880 13 C -0.105 4.105 14 C -0.058 4.058 15 C -0.110 4.110 16 C 0.099 3.901 17 N -0.632 5.632 18 C -0.306 4.306 19 H 0.040 0.960 20 C -0.086 4.086 21 N -0.968 5.968 22 Si 1.115 2.885 23 H -0.317 1.317 24 H -0.281 1.281 25 H -0.252 1.252 26 C 0.140 3.860 27 C -0.113 4.113 28 C 0.099 3.901 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.027 0.973 48 H 0.023 0.977 49 H 0.245 0.755 50 H 0.036 0.964 51 H 0.023 0.977 52 H 0.103 0.897 53 H 0.067 0.933 54 H 0.120 0.880 55 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.816 -10.635 -20.493 33.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.017 4.017 5 O -0.306 6.306 6 C 0.012 3.988 7 H 0.128 0.872 8 C -0.229 4.229 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.335 5.335 12 C -0.002 4.002 13 C -0.143 4.143 14 C -0.059 4.059 15 C -0.147 4.147 16 C -0.025 4.025 17 N -0.360 5.360 18 C -0.435 4.435 19 H 0.058 0.942 20 C -0.278 4.278 21 N -0.612 5.612 22 Si 0.942 3.058 23 H -0.246 1.246 24 H -0.208 1.208 25 H -0.177 1.177 26 C 0.015 3.985 27 C -0.151 4.151 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.045 0.955 48 H 0.040 0.960 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.041 0.959 52 H 0.122 0.878 53 H 0.086 0.914 54 H 0.137 0.863 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.237 -11.148 -20.792 33.114 hybrid contribution -0.555 2.294 0.788 2.488 sum -23.793 -8.854 -20.004 32.321 Atomic orbital electron populations 1.21751 0.92374 1.02875 1.02745 1.21118 0.96821 0.95982 0.97474 1.21776 1.00382 0.96202 1.01863 1.22899 0.79551 1.00579 0.98700 1.88020 1.21603 1.79053 1.41894 1.21991 0.91011 0.94209 0.91542 0.87151 1.22422 1.04795 0.91694 1.04016 1.21117 0.88089 0.80751 0.80369 1.90682 1.71828 1.35818 1.47494 1.48131 1.16516 1.44245 1.24566 1.21530 0.83637 0.99388 0.95656 1.21517 1.01095 0.97736 0.93983 1.21019 0.96629 0.95140 0.93152 1.22692 0.94954 0.97784 0.99271 1.22155 0.97556 0.90063 0.92682 1.44937 1.08728 1.41879 1.40460 1.20038 1.01495 1.06308 1.15675 0.94222 1.27216 0.93597 1.08942 0.98012 1.71000 1.38788 1.07034 1.44425 0.83326 0.73724 0.71659 0.77048 1.24624 1.20808 1.17724 1.21773 0.84931 0.97562 0.94190 1.21763 0.93751 1.02187 0.97423 1.22357 1.01359 0.91428 0.87076 0.92058 0.91578 0.91291 0.91093 0.94518 0.91964 0.92735 0.90847 0.92696 0.92772 0.88147 0.89022 0.91172 0.89628 0.92968 0.92757 0.88710 0.88388 0.95541 0.95979 0.94623 0.94624 0.95851 0.87821 0.91397 0.86257 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 71.98 0.66 -0.53 16 2 C -0.10 -1.30 3.16 -10.79 -0.03 -1.34 16 3 C -0.14 -2.45 9.09 71.98 0.65 -1.80 16 4 C 0.06 0.80 5.13 71.98 0.37 1.17 16 5 O -0.39 -8.18 9.06 -129.99 -1.18 -9.36 16 6 C 0.07 1.20 2.30 29.85 0.07 1.27 16 7 H 0.11 1.19 7.09 -2.39 -0.02 1.18 16 8 C -0.17 -1.75 9.10 71.98 0.65 -1.10 16 9 C 0.51 12.48 7.12 87.66 0.62 13.10 16 10 O -0.58 -20.49 15.91 15.97 0.25 -20.24 16 11 N -0.60 -12.24 2.96 -818.25 -2.42 -14.66 16 12 C 0.12 3.00 6.12 86.41 0.53 3.52 16 13 C -0.10 -3.04 4.87 30.42 0.15 -2.89 16 14 C -0.06 -1.53 0.55 -51.84 -0.03 -1.56 16 15 C -0.11 -2.85 4.91 31.56 0.16 -2.69 16 16 C 0.10 3.95 4.24 86.76 0.37 4.32 16 17 N -0.63 -30.03 3.31 -692.29 -2.29 -32.32 16 18 C -0.31 -18.06 10.56 84.03 0.89 -17.17 16 19 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 20 C -0.09 -5.22 5.50 84.86 0.47 -4.75 16 21 N -0.97 -63.88 13.70 21.65 0.30 -63.58 16 22 Si 1.11 54.33 24.53 68.60 1.68 56.01 16 23 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 24 H -0.28 -12.67 6.84 99.48 0.68 -11.99 16 25 H -0.25 -10.79 5.43 99.48 0.54 -10.25 16 26 C 0.14 5.19 6.16 86.63 0.53 5.72 16 27 C -0.11 -1.87 4.84 30.43 0.15 -1.72 16 28 C 0.10 1.21 4.72 86.43 0.41 1.61 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.64 7.87 -2.39 -0.02 0.62 16 37 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.59 5.40 -2.39 -0.01 0.57 16 40 H 0.09 0.56 7.87 -2.39 -0.02 0.54 16 41 H 0.07 2.07 6.99 -2.39 -0.02 2.05 16 42 H 0.09 1.89 6.55 -2.39 -0.02 1.87 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.92 7.82 -2.38 -0.02 1.90 16 45 H 0.09 2.04 6.17 -2.39 -0.01 2.02 16 46 H 0.10 2.03 7.98 -2.38 -0.02 2.01 16 47 H 0.03 1.14 6.79 -2.39 -0.02 1.12 16 48 H 0.02 0.93 3.81 -2.39 -0.01 0.93 16 49 H 0.24 16.30 8.73 -92.71 -0.81 15.49 16 50 H 0.04 1.25 8.00 -2.39 -0.02 1.24 16 51 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 52 H 0.10 1.33 8.09 -2.39 -0.02 1.31 16 53 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.12 0.72 4.62 -2.39 -0.01 0.71 16 55 H 0.10 0.88 7.62 -2.39 -0.02 0.86 16 Total: -1.00 -83.14 403.07 3.57 -79.57 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.62 Total: 9.39 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.61 Total: -4.82 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -4.42 Total: -110.56 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.92 Total: -29.60 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 1.68 Total: 56.01 kcal Total: -83.14 3.57 -79.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732331234.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.196 kcal (2) G-P(sol) polarization free energy of solvation -83.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds