Wall clock time and date at job start Tue Mar 31 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99853 * 2 1 4 4 C 1.52995 * 109.46999 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.43750 * 294.32513 * 4 3 2 6 6 O 1.21284 * 119.99811 * 118.34263 * 5 4 3 7 7 N 1.34769 * 120.00117 * 298.34351 * 5 4 3 8 8 C 1.46928 * 120.63029 * 354.68185 * 7 5 4 9 9 C 1.53191 * 108.77615 * 126.41322 * 8 7 5 10 10 C 1.53031 * 109.34345 * 54.61787 * 9 8 7 11 11 C 1.53044 * 109.54075 * 298.68826 * 10 9 8 12 12 H 1.09003 * 109.49460 * 301.34461 * 11 10 9 13 13 C 1.52996 * 109.49936 * 181.28059 * 11 10 9 14 14 H 1.08998 * 109.47047 * 185.06199 * 13 11 10 15 15 C 1.52999 * 109.47143 * 305.06130 * 13 11 10 16 16 N 1.46502 * 109.47005 * 65.06284 * 13 11 10 17 17 C 1.36941 * 119.99843 * 155.00145 * 16 13 11 18 18 H 1.07993 * 120.00021 * 359.97438 * 17 16 13 19 19 C 1.38814 * 119.99775 * 179.97438 * 17 16 13 20 20 N 1.31610 * 119.99843 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00088 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47234 * 90.00080 * 21 19 17 23 23 H 1.48498 * 109.47227 * 210.00148 * 21 19 17 24 24 H 1.48499 * 109.47323 * 330.00109 * 21 19 17 25 25 C 1.46928 * 120.63258 * 174.70412 * 7 5 4 26 26 C 1.54897 * 110.59699 * 56.94226 * 4 3 2 27 27 C 1.54888 * 102.74792 * 156.67272 * 26 4 3 28 28 C 1.54265 * 104.19927 * 322.05879 * 27 26 4 29 29 C 1.53878 * 106.59839 * 23.60780 * 28 27 26 30 30 H 1.09002 * 109.47018 * 299.99603 * 1 2 3 31 31 H 1.08997 * 109.47144 * 59.99839 * 1 2 3 32 32 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46682 * 60.00197 * 3 2 1 34 34 H 1.08997 * 109.47088 * 300.00271 * 3 2 1 35 35 H 1.08999 * 109.58820 * 246.20425 * 8 7 5 36 36 H 1.09005 * 109.58687 * 6.47967 * 8 7 5 37 37 H 1.09000 * 109.49343 * 174.58960 * 9 8 7 38 38 H 1.09002 * 109.49543 * 294.64959 * 9 8 7 39 39 H 1.08990 * 109.49113 * 178.64341 * 10 9 8 40 40 H 1.09006 * 109.42945 * 58.68741 * 10 9 8 41 41 H 1.09008 * 109.46910 * 60.00166 * 15 13 11 42 42 H 1.09001 * 109.47280 * 179.97438 * 15 13 11 43 43 H 1.08996 * 109.47083 * 299.99911 * 15 13 11 44 44 H 0.96998 * 119.99991 * 334.99622 * 16 13 11 45 45 H 0.96998 * 120.00543 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58525 * 113.80041 * 25 7 5 47 47 H 1.08994 * 109.70121 * 353.44274 * 25 7 5 48 48 H 1.08995 * 110.75717 * 274.99161 * 26 4 3 49 49 H 1.09006 * 110.75386 * 38.36167 * 26 4 3 50 50 H 1.09002 * 110.48950 * 203.38015 * 27 26 4 51 51 H 1.09001 * 110.48593 * 80.74023 * 27 26 4 52 52 H 1.09004 * 110.03083 * 264.32613 * 28 27 26 53 53 H 1.08999 * 110.07824 * 142.91556 * 28 27 26 54 54 H 1.08996 * 110.03364 * 240.72058 * 29 28 27 55 55 H 1.09000 * 110.07304 * 119.30383 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0136 0.5635 1.2877 6 8 4.6111 -0.4917 1.2665 7 7 3.7771 1.1805 2.4623 8 6 3.1586 2.5128 2.4969 9 6 1.9327 2.4636 3.4142 10 6 2.3474 1.9275 4.7862 11 6 2.8965 0.5069 4.6361 12 1 2.1344 -0.1325 4.1905 13 6 3.2811 -0.0401 6.0122 14 1 3.7546 -1.0150 5.8963 15 6 4.2574 0.9238 6.6895 16 7 2.0781 -0.1764 6.8371 17 6 2.0520 -1.0802 7.8656 18 1 2.9180 -1.6927 8.0683 19 6 0.9123 -1.2090 8.6476 20 7 0.8870 -2.0780 9.6357 21 14 -0.5854 -0.1491 8.2974 22 1 -1.4710 -0.8472 7.3311 23 1 -1.3262 0.0942 9.5612 24 1 -0.1499 1.1485 7.7213 25 6 4.1334 0.5339 3.7327 26 6 4.0167 0.3530 -1.2143 27 6 5.4779 0.8321 -1.3992 28 6 5.4218 2.3437 -1.0960 29 6 4.1867 2.5679 -0.2060 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8748 3.2383 2.8827 36 1 2.8535 2.8003 1.4907 37 1 1.5207 3.4667 3.5249 38 1 1.1792 1.8068 2.9795 39 1 1.4817 1.9142 5.4483 40 1 3.1181 2.5718 5.2095 41 1 3.7838 1.8987 6.8054 42 1 4.5311 0.5343 7.6701 43 1 5.1524 1.0252 6.0757 44 1 1.3001 0.3735 6.6548 45 1 0.0908 -2.1678 10.1824 46 1 4.9291 1.0980 4.2193 47 1 4.4706 -0.4853 3.5443 48 1 3.9852 -0.7130 -0.9894 49 1 3.4209 0.5802 -2.0983 50 1 5.8090 0.6606 -2.4235 51 1 6.1375 0.3259 -0.6943 52 1 5.3208 2.9071 -2.0236 53 1 6.3237 2.6531 -0.5678 54 1 3.4863 3.2400 -0.7017 55 1 4.4885 2.9856 0.7545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526290.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:48 Heat of formation + Delta-G solvation = -93.426674 kcal Electronic energy + Delta-G solvation = -32415.108747 eV Core-core repulsion = 28451.239777 eV Total energy + Delta-G solvation = -3963.868970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.11369 -39.86704 -38.69611 -37.69430 -37.10594 -34.70101 -33.18802 -32.53317 -31.54760 -29.88990 -29.26945 -27.65168 -26.79461 -26.14357 -25.26453 -24.27290 -23.35104 -22.09258 -21.36387 -20.41587 -19.66613 -19.52136 -18.01008 -17.43240 -17.09029 -16.95689 -16.69785 -16.33728 -16.22681 -15.78194 -15.66876 -15.53005 -15.26736 -15.07916 -14.65951 -14.43088 -14.27229 -14.11330 -14.02942 -13.91575 -13.72090 -13.15777 -13.11451 -12.93364 -12.58369 -12.53706 -12.50014 -12.42851 -12.20804 -12.14652 -12.05704 -11.91174 -11.84863 -11.81738 -11.71665 -11.59925 -11.47894 -11.28690 -11.19385 -10.95638 -10.76021 -10.39947 -9.61108 -9.32642 -8.03234 -5.36268 1.33239 1.38696 1.45790 1.63868 1.98976 2.46974 2.72123 3.27743 3.34386 3.52102 3.61247 3.65430 3.75941 3.84386 3.94584 3.98956 4.15499 4.18364 4.24577 4.29530 4.36445 4.43708 4.48711 4.50200 4.52076 4.54766 4.57071 4.57623 4.65403 4.72356 4.73486 4.76636 4.84253 4.84647 4.90187 4.94355 5.01966 5.05594 5.08364 5.09368 5.14118 5.20901 5.25786 5.33744 5.36060 5.39863 5.49962 5.55138 5.64165 5.76465 6.20059 6.21167 6.46527 7.07323 7.21374 7.83433 8.04031 9.18903 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003228 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.424970 B = 8670.833031 C = 9257.158107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.061 3.939 4 C -0.080 4.080 5 C 0.527 3.473 6 O -0.585 6.585 7 N -0.607 5.607 8 C 0.090 3.910 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.092 4.092 12 H 0.047 0.953 13 C 0.176 3.824 14 H 0.028 0.972 15 C -0.156 4.156 16 N -0.748 5.748 17 C -0.228 4.228 18 H 0.051 0.949 19 C -0.068 4.068 20 N -0.987 5.987 21 Si 0.955 3.045 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.246 1.246 25 C 0.126 3.874 26 C -0.093 4.093 27 C -0.128 4.128 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.072 0.928 44 H 0.366 0.634 45 H 0.257 0.743 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.079 0.921 51 H 0.039 0.961 52 H 0.091 0.909 53 H 0.064 0.936 54 H 0.112 0.888 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 19.789 -27.580 34.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.084 4.084 5 C 0.317 3.683 6 O -0.464 6.464 7 N -0.339 5.339 8 C -0.031 4.031 9 C -0.170 4.170 10 C -0.151 4.151 11 C -0.112 4.112 12 H 0.066 0.934 13 C 0.068 3.932 14 H 0.046 0.954 15 C -0.215 4.215 16 N -0.392 5.392 17 C -0.359 4.359 18 H 0.069 0.931 19 C -0.259 4.259 20 N -0.638 5.638 21 Si 0.782 3.218 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.170 1.170 25 C 0.003 3.997 26 C -0.130 4.130 27 C -0.166 4.166 28 C -0.157 4.157 29 C -0.153 4.153 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.110 0.890 50 H 0.098 0.902 51 H 0.058 0.942 52 H 0.110 0.890 53 H 0.082 0.918 54 H 0.131 0.869 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.893 18.921 -27.455 33.570 hybrid contribution -1.149 -0.652 0.922 1.611 sum 2.743 18.269 -26.533 32.331 Atomic orbital electron populations 1.22864 0.79622 1.03260 1.01074 1.87953 1.21227 1.28773 1.95621 1.23046 0.90202 0.85198 1.03032 1.21718 0.95275 0.98938 0.92438 1.20882 0.77781 0.83899 0.85745 1.90643 1.43321 1.25048 1.87432 1.48111 1.61243 1.19585 1.04953 1.22464 0.95323 0.82715 1.02564 1.21985 0.97469 1.03018 0.94545 1.21610 1.01167 0.94576 0.97783 1.21574 0.97320 0.98126 0.94202 0.93438 1.20296 0.87236 0.96399 0.89244 0.95372 1.22357 0.99199 1.00069 0.99922 1.42748 1.14355 1.45902 1.36193 1.19029 0.99019 1.12220 1.05666 0.93078 1.25525 1.01374 1.00993 0.97972 1.69890 1.30090 1.40615 1.23190 0.85406 0.79537 0.79866 0.76973 1.20793 1.22105 1.17041 1.21478 0.96374 0.98533 0.83351 1.22275 0.96433 0.98599 0.95734 1.22374 0.96060 0.96600 1.01529 1.22140 0.97631 0.95314 1.00575 1.22535 0.98106 0.92726 1.01945 0.93749 0.91686 0.90055 0.91043 0.89110 0.88703 0.86582 0.87439 0.92707 0.93036 0.89638 0.91609 0.95257 0.90967 0.79985 0.93391 0.89388 0.92250 0.93748 0.88964 0.90200 0.94188 0.89030 0.91757 0.86924 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -9.61 10.11 -148.98 -1.51 -11.12 16 3 C 0.06 0.96 4.41 71.98 0.32 1.28 16 4 C -0.08 -1.47 0.35 -51.85 -0.02 -1.49 16 5 C 0.53 14.40 6.09 87.66 0.53 14.93 16 6 O -0.58 -21.91 14.66 -3.04 -0.04 -21.95 16 7 N -0.61 -14.25 2.96 -818.90 -2.43 -16.68 16 8 C 0.09 1.29 3.93 86.36 0.34 1.62 16 9 C -0.13 -2.16 5.81 30.67 0.18 -1.98 16 10 C -0.11 -2.72 4.52 30.62 0.14 -2.58 16 11 C -0.09 -2.85 2.27 -10.71 -0.02 -2.87 16 12 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 13 C 0.18 6.85 2.67 44.99 0.12 6.97 16 14 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 15 C -0.16 -5.19 8.76 71.98 0.63 -4.56 16 16 N -0.75 -35.43 4.86 -322.95 -1.57 -37.00 16 17 C -0.23 -13.40 10.41 84.03 0.87 -12.52 16 18 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 20 N -0.99 -64.88 13.97 21.65 0.30 -64.57 16 21 Si 0.96 45.95 27.73 68.60 1.90 47.85 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 25 C 0.13 3.55 5.56 86.36 0.48 4.04 16 26 C -0.09 -1.86 5.15 31.89 0.16 -1.70 16 27 C -0.13 -2.25 6.53 31.67 0.21 -2.05 16 28 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 29 C -0.12 -1.20 4.60 31.32 0.14 -1.06 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 0.97 4.48 -2.39 -0.01 0.96 16 34 H 0.09 0.84 8.01 -2.39 -0.02 0.82 16 35 H 0.09 0.98 8.13 -2.39 -0.02 0.96 16 36 H 0.12 1.09 3.21 -2.38 -0.01 1.08 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.04 7.53 -2.39 -0.02 1.02 16 39 H 0.05 1.42 6.74 -2.39 -0.02 1.41 16 40 H 0.09 1.79 6.43 -2.38 -0.02 1.78 16 41 H 0.06 1.97 6.38 -2.38 -0.02 1.96 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.94 6.46 -2.39 -0.02 1.92 16 44 H 0.37 16.38 4.22 -92.71 -0.39 15.99 16 45 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 46 H 0.09 2.15 6.35 -2.39 -0.02 2.13 16 47 H 0.06 2.07 7.05 -2.39 -0.02 2.05 16 48 H 0.04 1.25 7.37 -2.39 -0.02 1.23 16 49 H 0.09 1.42 8.06 -2.38 -0.02 1.40 16 50 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.04 0.95 7.77 -2.39 -0.02 0.93 16 52 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 54 H 0.11 0.44 7.75 -2.39 -0.02 0.42 16 55 H 0.08 0.81 5.67 -2.39 -0.01 0.80 16 Total: -1.00 -81.71 398.73 3.10 -78.60 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.43 Total: 29.89 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.01 Total: -5.02 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -3.69 Total: -118.25 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.55 Total: -33.07 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -81.71 3.10 -78.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526290.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.822 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds