Wall clock time and date at job start Tue Mar 31 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.46945 * 239.99740 * 2 1 3 5 5 C 1.50704 * 109.46991 * 65.00619 * 4 2 1 6 6 O 1.21274 * 120.00072 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99816 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00072 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47282 * 179.97438 * 8 7 5 10 10 O 1.42901 * 110.64338 * 298.31527 * 9 8 7 11 11 C 1.55154 * 110.71880 * 174.97661 * 9 8 7 12 12 C 1.54910 * 101.58031 * 206.13651 * 11 9 8 13 13 N 1.47426 * 104.83209 * 37.01037 * 12 11 9 14 14 C 1.36937 * 125.64487 * 155.84912 * 13 12 11 15 15 H 1.08001 * 119.99600 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00345 * 0.02772 * 14 13 12 17 17 N 1.31623 * 120.00215 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99940 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47445 * 59.99771 * 18 16 14 20 20 H 1.48507 * 109.46867 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46918 * 299.99556 * 18 16 14 22 22 C 1.47019 * 108.70209 * 335.87354 * 13 12 11 23 23 C 1.53002 * 109.46889 * 119.99930 * 2 1 3 24 24 C 1.52999 * 109.47162 * 300.00216 * 23 2 1 25 25 C 1.53002 * 109.47162 * 180.02562 * 24 23 2 26 26 C 1.53002 * 109.46889 * 59.99784 * 25 24 23 27 27 C 1.52998 * 109.47295 * 299.99695 * 26 25 24 28 28 C 1.52999 * 109.47206 * 179.97438 * 23 2 1 29 29 H 1.08997 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47495 * 300.00331 * 1 2 3 31 31 H 1.09008 * 109.47049 * 60.00293 * 1 2 3 32 32 H 1.08998 * 109.47576 * 304.99890 * 4 2 1 33 33 H 1.09002 * 109.47076 * 185.00059 * 4 2 1 34 34 H 0.97006 * 120.00120 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.46837 * 59.99936 * 8 7 5 36 36 H 1.09000 * 109.47332 * 300.00307 * 8 7 5 37 37 H 0.96694 * 114.00195 * 61.68414 * 10 9 8 38 38 H 1.09002 * 111.00945 * 88.06458 * 11 9 8 39 39 H 1.08999 * 111.00353 * 324.20996 * 11 9 8 40 40 H 1.08998 * 110.36709 * 278.17139 * 12 11 9 41 41 H 1.09005 * 110.36466 * 155.84673 * 12 11 9 42 42 H 0.96993 * 120.00387 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.88389 * 120.48020 * 22 13 12 44 44 H 1.09004 * 109.87600 * 241.48978 * 22 13 12 45 45 H 1.08997 * 109.47132 * 60.00017 * 23 2 1 46 46 H 1.08997 * 109.46934 * 299.99922 * 24 23 2 47 47 H 1.09003 * 109.47452 * 60.00015 * 24 23 2 48 48 H 1.08997 * 109.47132 * 299.99801 * 25 24 23 49 49 H 1.08999 * 109.46839 * 179.97438 * 25 24 23 50 50 H 1.08998 * 109.46755 * 180.02562 * 26 25 24 51 51 H 1.08997 * 109.47219 * 60.00070 * 26 25 24 52 52 H 1.08998 * 109.47151 * 300.00862 * 27 26 25 53 53 H 1.08993 * 109.47411 * 179.97438 * 27 26 25 54 54 H 1.08998 * 109.47130 * 300.00619 * 28 23 2 55 55 H 1.08997 * 109.46917 * 60.00061 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0111 1.0870 -2.3633 7 7 1.9854 -0.3914 -3.7001 8 6 1.5975 0.3649 -4.8933 9 6 2.1086 -0.3557 -6.1424 10 8 3.5353 -0.4362 -6.1293 11 6 1.6067 0.3523 -7.4285 12 6 1.6141 -0.8136 -8.4484 13 7 1.1834 -1.9933 -7.6762 14 6 0.6000 -3.1179 -8.1960 15 1 0.3191 -3.9313 -7.5434 16 6 0.3698 -3.2124 -9.5616 17 7 0.7118 -2.2210 -10.3569 18 14 -0.4266 -4.7463 -10.2704 19 1 -1.7707 -4.9305 -9.6664 20 1 -0.5617 -4.5989 -11.7420 21 1 0.4189 -5.9286 -9.9665 22 6 1.4834 -1.7620 -6.2557 23 6 2.0400 -0.7213 1.2493 24 6 1.5299 0.0000 2.4985 25 6 2.0404 -0.7209 3.7478 26 6 3.5704 -0.7203 3.7475 27 6 4.0804 -1.4417 2.4983 28 6 3.5700 -0.7219 1.2490 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 2.4898 -1.2150 -3.7907 35 1 2.0314 1.3637 -4.8473 36 1 0.5111 0.4425 -4.9371 37 1 3.8942 -0.9363 -5.3835 38 1 2.2933 1.1422 -7.7331 39 1 0.5991 0.7445 -7.2907 40 1 2.6184 -0.9652 -8.8440 41 1 0.9126 -0.6136 -9.2584 42 1 0.5505 -2.2869 -11.3111 43 1 0.5649 -1.8077 -5.6706 44 1 2.1879 -2.5132 -5.8986 45 1 1.6766 -1.7489 1.2493 46 1 1.8932 1.0276 2.4985 47 1 0.4399 0.0000 2.4985 48 1 1.6774 -1.7487 3.7480 49 1 1.6773 -0.2068 4.6377 50 1 3.9340 -1.2343 4.6372 51 1 3.9334 0.3074 3.7472 52 1 3.7174 -2.4694 2.4985 53 1 5.1704 -1.4409 2.4978 54 1 3.9329 -1.2359 0.3590 55 1 3.9337 0.3056 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733494081.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:30 Heat of formation + Delta-G solvation = -117.329462 kcal Electronic energy + Delta-G solvation = -30337.415072 eV Core-core repulsion = 26372.509599 eV Total energy + Delta-G solvation = -3964.905473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.26086 -40.23787 -39.42314 -36.84026 -35.71560 -35.20832 -33.99507 -31.80755 -31.46407 -30.64803 -29.77837 -28.51616 -27.28668 -25.30464 -24.08237 -23.21247 -22.38953 -21.49943 -21.35579 -20.70508 -20.56348 -18.94995 -18.61243 -17.56698 -16.90101 -16.75991 -16.64798 -16.20689 -15.86178 -15.59562 -15.47673 -15.03735 -14.87181 -14.84191 -14.67412 -14.44033 -14.17152 -14.12798 -13.92436 -13.71341 -13.30154 -13.24268 -13.06997 -12.91967 -12.73518 -12.66307 -12.37895 -12.29332 -12.10576 -12.05455 -12.01981 -11.96631 -11.88906 -11.76805 -11.60939 -11.53272 -11.23264 -10.97706 -10.90278 -10.74224 -10.66565 -10.57017 -10.09993 -8.91450 -7.78050 -5.23333 1.46613 1.49908 1.56331 1.70361 2.17672 2.48649 3.15070 3.31603 3.44788 3.67279 3.72697 3.75404 3.85611 3.92480 3.95075 4.01556 4.10373 4.24212 4.42248 4.49091 4.49952 4.52381 4.59198 4.61174 4.68806 4.72141 4.72807 4.76822 4.79498 4.80711 4.86926 4.94527 4.97565 4.98341 5.05458 5.08845 5.12899 5.24086 5.28983 5.33622 5.35222 5.38191 5.42944 5.45225 5.47190 5.54173 5.59983 5.62840 5.71564 5.78670 6.28255 6.53602 6.79722 7.08436 7.29048 7.75786 8.39570 9.23741 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002025 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.722469 B =13827.015476 C =14250.983405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.064 4.064 3 H 0.059 0.941 4 C -0.134 4.134 5 C 0.510 3.490 6 O -0.577 6.577 7 N -0.721 5.721 8 C 0.121 3.879 9 C 0.127 3.873 10 O -0.554 6.554 11 C -0.121 4.121 12 C 0.160 3.840 13 N -0.623 5.623 14 C -0.241 4.241 15 H 0.083 0.917 16 C -0.069 4.069 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.277 1.277 22 C 0.114 3.886 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.119 4.119 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.411 0.589 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.385 0.615 38 H 0.084 0.916 39 H 0.084 0.916 40 H -0.015 1.015 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.056 0.944 52 H 0.064 0.936 53 H 0.064 0.936 54 H 0.074 0.926 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 2.585 28.213 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.173 4.173 5 C 0.298 3.702 6 O -0.457 6.457 7 N -0.374 5.374 8 C -0.004 4.004 9 C 0.085 3.915 10 O -0.361 6.361 11 C -0.160 4.160 12 C 0.035 3.965 13 N -0.349 5.349 14 C -0.369 4.369 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.598 5.598 18 Si 0.810 3.190 19 H -0.202 1.202 20 H -0.221 1.221 21 H -0.203 1.203 22 C -0.012 4.012 23 C -0.092 4.092 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.156 4.156 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.003 0.997 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.082 0.918 53 H 0.083 0.917 54 H 0.093 0.907 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.608 3.578 27.563 28.354 hybrid contribution -0.182 -1.249 -0.552 1.378 sum 5.426 2.328 27.011 27.649 Atomic orbital electron populations 1.21961 0.95679 1.01553 1.01801 1.20838 0.95609 0.98997 0.92854 0.92294 1.21904 1.04633 1.00347 0.90454 1.21360 0.78122 0.85391 0.85283 1.90662 1.41351 1.26590 1.87103 1.45944 1.58083 1.28062 1.05329 1.21677 1.00047 0.95563 0.83154 1.22177 0.80929 0.94141 0.94248 1.86589 1.18928 1.77626 1.52980 1.22900 1.01033 0.98164 0.93936 1.21654 0.96460 0.84366 0.94058 1.44697 1.70853 1.16924 1.02433 1.19420 1.31466 0.94410 0.91649 0.89874 1.25685 1.02580 1.01416 0.96480 1.70044 1.53920 1.32614 1.03271 0.85095 0.78465 0.78710 0.76696 1.20184 1.22092 1.20328 1.22123 0.97589 0.94994 0.86489 1.21137 0.95537 0.99562 0.93012 1.21623 1.00440 0.99063 0.94227 1.21527 0.95796 1.00750 0.97486 1.21551 0.95608 1.00592 0.98109 1.21519 1.00347 0.99440 0.94319 1.21677 0.94686 1.00766 0.98464 0.92545 0.92291 0.93598 0.87018 0.86247 0.75254 0.90814 0.91618 0.76538 0.89700 0.89729 0.99677 0.90740 0.94301 0.94685 0.94517 0.90530 0.92766 0.91870 0.91851 0.91998 0.91760 0.92511 0.91752 0.91748 0.90749 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.58 71.98 0.62 -2.27 16 2 C -0.06 -1.03 1.62 -10.79 -0.02 -1.04 16 3 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 4 C -0.13 -1.92 4.96 29.85 0.15 -1.77 16 5 C 0.51 11.50 7.55 87.66 0.66 12.16 16 6 O -0.58 -17.87 13.96 -3.01 -0.04 -17.91 16 7 N -0.72 -15.27 5.17 -463.07 -2.40 -17.67 16 8 C 0.12 3.29 4.73 86.38 0.41 3.70 16 9 C 0.13 4.09 0.92 -9.61 -0.01 4.08 16 10 O -0.55 -16.87 13.10 -148.98 -1.95 -18.82 16 11 C -0.12 -4.61 6.26 31.99 0.20 -4.41 16 12 C 0.16 8.04 5.88 86.86 0.51 8.55 16 13 N -0.62 -31.76 3.39 -691.99 -2.35 -34.11 16 14 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 17 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 18 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 C 0.11 4.35 6.02 86.73 0.52 4.87 16 23 C -0.07 -0.89 1.78 -10.79 -0.02 -0.91 16 24 C -0.12 -1.45 4.85 30.59 0.15 -1.30 16 25 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 26 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 27 C -0.12 -1.16 5.92 30.58 0.18 -0.98 16 28 C -0.12 -1.26 4.86 30.58 0.15 -1.12 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 31 H 0.04 1.15 5.95 -2.38 -0.01 1.14 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.12 1.17 6.17 -2.39 -0.01 1.15 16 34 H 0.41 6.52 7.38 -92.70 -0.68 5.83 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 37 H 0.39 7.99 8.12 -74.06 -0.60 7.39 16 38 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.08 3.05 8.04 -2.39 -0.02 3.03 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.07 4.25 5.87 -2.38 -0.01 4.23 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 44 H 0.04 1.32 8.06 -2.38 -0.02 1.30 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 54 H 0.07 0.65 6.32 -2.39 -0.02 0.64 16 55 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.69 410.94 0.29 -71.41 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.41 Total: 24.87 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.19 Total: 1.47 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.53 Total: -108.44 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.99 Total: -36.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.69 0.29 -71.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733494081.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.924 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds