Wall clock time and date at job start Tue Mar 31 2020 23:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 O 1.42900 * 109.47003 * 240.00323 * 2 1 3 5 5 C 1.42901 * 114.00285 * 90.00350 * 4 2 1 6 6 C 1.50470 * 109.63310 * 90.96852 * 5 4 2 7 7 C 1.54066 * 112.49875 * 213.86048 * 6 5 4 8 8 C 1.54065 * 112.81762 * 318.28617 * 7 6 5 9 9 C 1.50473 * 112.49668 * 318.28045 * 8 7 6 10 10 C 1.54242 * 108.52431 * 94.15076 * 9 8 7 11 11 C 1.45537 * 112.40484 * 280.01487 * 10 9 8 12 12 C 1.50694 * 109.47411 * 119.99855 * 2 1 3 13 13 O 1.21280 * 119.99834 * 119.99738 * 12 2 1 14 14 N 1.34777 * 120.00201 * 300.00667 * 12 2 1 15 15 C 1.46503 * 120.00157 * 179.97438 * 14 12 2 16 16 C 1.53785 * 113.60938 * 254.13317 * 15 14 12 17 17 C 1.53962 * 87.01567 * 220.04970 * 16 15 14 18 18 C 1.52994 * 113.66664 * 139.93874 * 17 16 15 19 19 N 1.46493 * 109.47510 * 87.43990 * 18 17 16 20 20 C 1.36940 * 120.00429 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99450 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00455 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00236 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00144 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47429 * 89.99921 * 24 22 20 26 26 H 1.48494 * 109.47419 * 210.00280 * 24 22 20 27 27 H 1.48507 * 109.46937 * 330.00103 * 24 22 20 28 28 C 1.53775 * 87.11113 * 25.36363 * 17 16 15 29 29 H 1.08992 * 109.46989 * 300.00153 * 1 2 3 30 30 H 1.09006 * 109.47162 * 60.00155 * 1 2 3 31 31 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.77966 * 330.47973 * 5 4 2 33 33 H 1.08997 * 108.87385 * 334.63990 * 6 5 4 34 34 H 1.09001 * 108.87633 * 93.08176 * 6 5 4 35 35 H 1.09005 * 108.81522 * 197.41965 * 7 6 5 36 36 H 1.09002 * 108.81156 * 79.14553 * 7 6 5 37 37 H 1.08999 * 108.87394 * 197.50477 * 8 7 6 38 38 H 1.09002 * 108.79987 * 79.00662 * 8 7 6 39 39 H 1.09006 * 109.62936 * 334.44242 * 9 8 7 40 40 H 1.08998 * 109.78811 * 213.95756 * 9 8 7 41 41 H 1.09000 * 108.89613 * 159.26169 * 10 9 8 42 42 H 1.08998 * 108.89249 * 40.76919 * 10 9 8 43 43 H 1.09001 * 108.89677 * 301.18243 * 11 10 9 44 44 H 1.09004 * 108.81712 * 182.63359 * 11 10 9 45 45 H 0.97002 * 119.99568 * 359.97438 * 14 12 2 46 46 H 1.08995 * 112.84703 * 25.32966 * 15 14 12 47 47 H 1.08997 * 113.61651 * 334.56451 * 16 15 14 48 48 H 1.08997 * 113.61012 * 105.47320 * 16 15 14 49 49 H 1.09002 * 113.61142 * 270.80032 * 17 16 15 50 50 H 1.09002 * 109.47146 * 207.44060 * 18 17 16 51 51 H 1.09003 * 109.47044 * 327.43249 * 18 17 16 52 52 H 0.96998 * 120.00151 * 359.97438 * 19 18 17 53 53 H 0.96998 * 119.99996 * 180.02562 * 23 22 20 54 54 H 1.09001 * 113.61384 * 220.08957 * 28 17 16 55 55 H 1.09002 * 113.69123 * 89.20003 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 3.6120 0.7034 -2.2968 7 6 3.7110 2.1367 -2.8530 8 6 2.8269 2.3580 -4.0952 9 6 2.8746 1.1960 -5.0502 10 6 1.6962 0.2527 -4.7333 11 6 1.9687 -0.6125 -3.5952 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9409 3.6507 16 6 1.1113 -1.7567 4.3758 17 6 1.7304 -1.2565 5.6937 18 6 0.6948 -0.8927 6.7595 19 7 0.3532 -2.0868 7.5362 20 6 -0.5605 -2.0042 8.5529 21 1 -1.0289 -1.0585 8.7823 22 6 -0.8845 -3.1358 9.2885 23 7 -1.7624 -3.0562 10.2660 24 14 -0.0748 -4.7716 8.8913 25 1 1.1703 -4.9140 9.6878 26 1 -1.0058 -5.8790 9.2259 27 1 0.2548 -4.8223 7.4442 28 6 2.2490 -0.0458 4.9000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.5019 1.0187 -2.2467 33 1 3.9931 0.6942 -1.2757 34 1 4.2294 0.0447 -2.9076 35 1 4.7484 2.3397 -3.1191 36 1 3.4063 2.8373 -2.0754 37 1 3.1656 3.2548 -4.6139 38 1 1.7967 2.5062 -3.7713 39 1 3.8158 0.6600 -4.9279 40 1 2.7893 1.5570 -6.0751 41 1 1.4950 -0.3668 -5.6074 42 1 0.8121 0.8525 -4.5171 43 1 2.8572 -1.2068 -3.8083 44 1 1.1214 -1.2834 -3.4527 45 1 1.1493 0.5389 2.5435 46 1 3.1145 -1.4978 3.4722 47 1 0.0995 -1.3906 4.2021 48 1 1.2042 -2.8328 4.2295 49 1 2.5228 -1.9001 6.0758 50 1 1.1081 -0.1333 7.4234 51 1 -0.2021 -0.5042 6.2770 52 1 0.7737 -2.9363 7.3300 53 1 -1.9885 -3.8469 10.7803 54 1 3.2589 0.2573 5.1763 55 1 1.5498 0.7899 4.8692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733953436.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:50 Heat of formation + Delta-G solvation = -93.608593 kcal Electronic energy + Delta-G solvation = -29687.215133 eV Core-core repulsion = 25723.338274 eV Total energy + Delta-G solvation = -3963.876859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.42524 -40.49345 -39.48418 -37.67348 -36.47037 -34.78508 -33.45339 -33.35541 -32.68969 -31.13757 -28.79636 -26.64420 -26.14068 -25.58762 -25.14885 -24.29197 -22.75627 -21.72759 -21.40630 -20.75760 -20.28472 -19.49590 -18.33262 -18.17570 -17.25815 -16.71926 -16.44350 -16.29032 -16.07486 -15.91244 -15.70739 -15.35944 -15.14227 -14.90614 -14.79605 -14.56421 -14.38971 -14.06513 -13.81786 -13.67929 -13.45463 -13.36558 -13.28655 -13.14647 -13.03395 -12.95784 -12.76749 -12.51047 -12.19501 -12.12440 -11.99311 -11.86565 -11.85350 -11.61048 -11.45340 -11.35487 -11.33899 -11.30992 -11.04245 -10.93734 -10.81685 -10.42321 -10.03366 -9.27437 -8.03501 -5.35844 1.37413 1.39434 1.46920 1.53148 1.86633 2.47372 2.84865 3.27701 3.48081 3.53756 3.62025 3.69589 3.73978 3.84542 3.90146 3.92116 4.03019 4.05606 4.07844 4.17187 4.24030 4.26842 4.38663 4.45383 4.50730 4.52084 4.60170 4.62584 4.77466 4.81436 4.87380 4.87754 4.95662 4.98317 5.00269 5.03096 5.05468 5.10471 5.18444 5.22122 5.22642 5.27070 5.32376 5.33386 5.36567 5.40589 5.45259 5.55689 5.62557 5.76126 6.20160 6.21338 6.57745 7.08293 7.22985 7.86365 8.03846 9.18006 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.001730 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.834873 B =16180.581595 C =16411.743480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.383 6.383 5 C 0.090 3.910 6 C -0.141 4.141 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.114 4.114 11 C -0.111 4.111 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.700 5.700 15 C 0.128 3.872 16 C -0.144 4.144 17 C -0.117 4.117 18 C 0.167 3.833 19 N -0.760 5.760 20 C -0.234 4.234 21 H 0.059 0.941 22 C -0.064 4.064 23 N -0.983 5.983 24 Si 0.953 3.047 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.256 1.256 28 C -0.112 4.112 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.418 0.582 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.089 0.911 50 H 0.028 0.972 51 H 0.029 0.971 52 H 0.364 0.636 53 H 0.257 0.743 54 H 0.090 0.910 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 15.572 -34.722 39.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.131 0.869 4 O -0.302 6.302 5 C 0.033 3.967 6 C -0.179 4.179 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.158 4.158 10 C -0.151 4.151 11 C -0.149 4.149 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.353 5.353 15 C 0.022 3.978 16 C -0.183 4.183 17 C -0.137 4.137 18 C 0.041 3.959 19 N -0.406 5.406 20 C -0.365 4.365 21 H 0.077 0.923 22 C -0.255 4.255 23 N -0.634 5.634 24 Si 0.781 3.219 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.181 1.181 28 C -0.151 4.151 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.256 0.744 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.046 0.954 51 H 0.047 0.953 52 H 0.197 0.803 53 H 0.066 0.934 54 H 0.108 0.892 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.564 14.806 -34.710 39.187 hybrid contribution -0.052 -1.056 0.607 1.220 sum 10.511 13.750 -34.103 38.244 Atomic orbital electron populations 1.22268 0.91895 1.03258 1.05041 1.22016 0.96027 0.96732 0.83983 0.86852 1.88070 1.86505 1.35855 1.19726 1.22054 0.96533 0.92724 0.85382 1.21903 0.97158 0.97770 1.01065 1.21866 1.00653 0.94656 0.97781 1.21384 1.00399 0.98590 0.95442 1.21386 0.98362 0.96522 0.99545 1.20431 0.98959 0.98425 0.97288 1.20491 1.02334 0.98812 0.93265 1.21087 0.79415 0.84322 0.85652 1.90701 1.39440 1.27998 1.87286 1.45832 1.53162 1.32119 1.04229 1.22381 0.97370 0.95016 0.82984 1.23538 0.99522 0.99860 0.95391 1.22540 0.98132 0.99348 0.93631 1.20777 0.95272 0.88402 0.91475 1.42781 1.50680 1.08255 1.38859 1.19086 1.14870 0.95665 1.06866 0.92298 1.25479 1.00271 1.01531 0.98255 1.69878 1.38530 1.29978 1.25006 0.85433 0.77860 0.79821 0.78827 1.20372 1.22245 1.18054 1.23223 1.03295 0.96568 0.91982 0.88811 0.89395 0.93078 0.89877 0.92976 0.92255 0.91813 0.91454 0.91269 0.91514 0.92264 0.90849 0.91130 0.91129 0.92568 0.91997 0.74446 0.88485 0.89308 0.93015 0.89265 0.95364 0.95287 0.80304 0.93373 0.89152 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.42 71.98 0.68 -1.32 16 2 C 0.07 1.20 2.87 29.85 0.09 1.28 16 3 H 0.11 1.16 7.80 -2.39 -0.02 1.14 16 4 O -0.38 -8.18 9.07 -129.94 -1.18 -9.36 16 5 C 0.09 1.28 2.07 30.20 0.06 1.35 16 6 C -0.14 -1.96 5.04 30.14 0.15 -1.81 16 7 C -0.11 -1.01 5.85 31.31 0.18 -0.83 16 8 C -0.12 -0.85 5.32 30.14 0.16 -0.69 16 9 C -0.12 -0.95 5.61 30.20 0.17 -0.78 16 10 C -0.11 -1.00 5.26 28.74 0.15 -0.85 16 11 C -0.11 -1.50 4.93 28.74 0.14 -1.35 16 12 C 0.51 11.87 7.23 87.66 0.63 12.51 16 13 O -0.58 -19.81 16.12 16.01 0.26 -19.55 16 14 N -0.70 -12.55 5.25 -440.04 -2.31 -14.87 16 15 C 0.13 2.80 4.21 45.52 0.19 2.99 16 16 C -0.14 -3.83 7.45 31.18 0.23 -3.60 16 17 C -0.12 -3.20 3.75 -10.21 -0.04 -3.24 16 18 C 0.17 6.02 6.10 86.38 0.53 6.54 16 19 N -0.76 -35.76 5.41 -343.47 -1.86 -37.62 16 20 C -0.23 -13.49 10.47 84.03 0.88 -12.61 16 21 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 22 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 23 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 24 Si 0.95 46.57 27.74 68.60 1.90 48.47 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 28 C -0.11 -2.12 7.39 31.12 0.23 -1.89 16 29 H 0.09 0.72 7.56 -2.39 -0.02 0.70 16 30 H 0.09 0.74 8.00 -2.38 -0.02 0.72 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.84 6.50 -2.39 -0.02 0.83 16 33 H 0.05 0.88 7.91 -2.39 -0.02 0.87 16 34 H 0.06 0.92 6.63 -2.39 -0.02 0.91 16 35 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.41 6.63 -2.39 -0.02 0.39 16 39 H 0.06 0.58 6.98 -2.38 -0.02 0.56 16 40 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.51 7.47 -2.39 -0.02 0.50 16 43 H 0.06 0.87 7.47 -2.39 -0.02 0.85 16 44 H 0.06 0.93 8.13 -2.38 -0.02 0.92 16 45 H 0.42 4.45 8.13 -92.71 -0.75 3.70 16 46 H 0.10 2.51 7.50 -2.39 -0.02 2.49 16 47 H 0.09 2.31 7.90 -2.39 -0.02 2.29 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 49 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.03 1.05 7.85 -2.39 -0.02 1.03 16 52 H 0.36 16.60 5.53 -92.71 -0.51 16.09 16 53 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 54 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 55 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 Total: -1.00 -78.59 420.63 1.56 -77.03 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.46 Total: 26.91 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.91 Total: -7.66 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.87 Total: -115.83 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.92 Total: -28.92 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -78.59 1.56 -77.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733953436.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.578 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds