Wall clock time and date at job start Tue Mar 31 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46847 * 2 1 4 4 N 1.46499 * 109.46947 * 119.99909 * 2 1 3 5 5 C 1.36936 * 120.00265 * 274.99499 * 4 2 1 6 6 H 1.07998 * 119.99560 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99703 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00180 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46884 * 90.00112 * 9 7 5 11 11 H 1.48505 * 109.46846 * 210.00076 * 9 7 5 12 12 H 1.48498 * 109.47032 * 330.00146 * 9 7 5 13 13 C 1.53000 * 109.46723 * 239.99980 * 2 1 3 14 14 H 1.09005 * 109.51045 * 65.10275 * 13 2 1 15 15 C 1.53718 * 109.43911 * 185.38692 * 13 2 1 16 16 N 1.47151 * 108.15911 * 172.37417 * 15 13 2 17 17 C 1.34773 * 120.98240 * 129.43373 * 16 15 13 18 18 O 1.21281 * 119.99820 * 4.95977 * 17 16 15 19 19 C 1.50704 * 120.00304 * 184.96238 * 17 16 15 20 20 C 1.52984 * 109.45821 * 205.36332 * 19 17 16 21 21 C 1.53017 * 109.46184 * 195.97953 * 20 19 17 22 22 C 1.53016 * 109.47085 * 284.05051 * 21 20 19 23 23 C 1.52992 * 109.45926 * 75.93532 * 22 21 20 24 24 C 1.52989 * 109.50360 * 44.01585 * 23 22 21 25 25 C 1.53008 * 109.48349 * 247.06132 * 24 23 22 26 26 C 1.52987 * 109.46525 * 85.32729 * 19 17 16 27 27 C 1.47155 * 118.03628 * 309.16236 * 16 15 13 28 28 C 1.53293 * 108.38701 * 50.78428 * 27 16 15 29 29 O 1.42956 * 109.51435 * 305.00123 * 13 2 1 30 30 H 1.08996 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47038 * 300.00280 * 1 2 3 32 32 H 1.08998 * 109.47237 * 59.99693 * 1 2 3 33 33 H 0.97000 * 119.99718 * 95.00251 * 4 2 1 34 34 H 0.96998 * 119.99779 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.83669 * 52.69401 * 15 13 2 36 36 H 1.09000 * 109.74524 * 291.99956 * 15 13 2 37 37 H 1.09006 * 109.46346 * 325.34578 * 19 17 16 38 38 H 1.09005 * 109.47324 * 75.98575 * 20 19 17 39 39 H 1.09003 * 109.47632 * 315.97630 * 20 19 17 40 40 H 1.08996 * 109.47580 * 164.05227 * 21 20 19 41 41 H 1.09000 * 109.46879 * 44.04395 * 21 20 19 42 42 H 1.08995 * 109.47408 * 195.93847 * 22 21 20 43 43 H 1.08999 * 109.46873 * 315.93722 * 22 21 20 44 44 H 1.09001 * 109.46492 * 164.01982 * 23 22 21 45 45 H 1.08996 * 109.46927 * 284.01260 * 23 22 21 46 46 H 1.08993 * 109.47089 * 7.06228 * 24 23 22 47 47 H 1.08997 * 109.46712 * 127.06438 * 24 23 22 48 48 H 1.08993 * 109.47800 * 195.94745 * 25 24 23 49 49 H 1.09003 * 109.47810 * 315.96811 * 25 24 23 50 50 H 1.09001 * 109.47250 * 112.94178 * 26 19 17 51 51 H 1.09008 * 109.46929 * 352.94337 * 26 19 17 52 52 H 1.08998 * 109.68054 * 170.51345 * 27 16 15 53 53 H 1.08997 * 109.67920 * 291.02220 * 27 16 15 54 54 H 1.08998 * 109.50902 * 67.62038 * 28 27 16 55 55 H 1.08998 * 109.50929 * 187.72340 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.7377 -0.0053 4.6429 9 14 3.0578 -2.4739 3.4247 10 1 4.4906 -2.6150 3.0608 11 1 2.8187 -3.1044 4.7479 12 1 2.2183 -3.1428 2.3986 13 6 2.0399 -0.7213 -1.2493 14 1 1.7534 -0.1579 -2.1374 15 6 3.5711 -0.8398 -1.1824 16 7 4.0141 -1.6932 -2.2964 17 6 4.9983 -1.2950 -3.1265 18 8 5.5941 -0.2613 -2.9087 19 6 5.3586 -2.1341 -4.3253 20 6 6.8121 -1.8635 -4.7185 21 6 7.0630 -2.3866 -6.1345 22 6 7.1873 -3.9113 -6.1004 23 6 5.7980 -4.5325 -5.9435 24 6 4.8131 -3.8231 -6.8748 25 6 3.7899 -3.0489 -6.0412 26 6 4.4381 -1.7758 -5.4936 27 6 3.3548 -2.9968 -2.4736 28 6 1.8379 -2.7754 -2.4743 29 8 1.4704 -2.0310 -1.3104 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6317 1.1526 34 1 3.0617 -0.4624 5.4347 35 1 3.8661 -1.2905 -0.2349 36 1 4.0214 0.1485 -1.2755 37 1 5.2392 -3.1892 -4.0793 38 1 7.4779 -2.3711 -4.0204 39 1 7.0031 -0.7908 -4.6883 40 1 7.9857 -1.9555 -6.5229 41 1 6.2305 -2.1043 -6.7789 42 1 7.6386 -4.2599 -7.0293 43 1 7.8143 -4.2060 -5.2589 44 1 5.8423 -5.5910 -6.2002 45 1 5.4653 -4.4226 -4.9114 46 1 5.3559 -3.1307 -7.5182 47 1 4.2975 -4.5614 -7.4887 48 1 2.9380 -2.7828 -6.6669 49 1 3.4518 -3.6704 -5.2120 50 1 5.0200 -1.2967 -6.2810 51 1 3.6621 -1.0924 -5.1484 52 1 3.6620 -3.4376 -3.4220 53 1 3.6291 -3.6612 -1.6542 54 1 1.5516 -2.2198 -3.3672 55 1 1.3294 -3.7395 -2.4665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734187477.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:12 Heat of formation + Delta-G solvation = -84.845902 kcal Electronic energy + Delta-G solvation = -32270.540973 eV Core-core repulsion = 28307.044093 eV Total energy + Delta-G solvation = -3963.496880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.95167 -40.31509 -39.08379 -37.28149 -35.85750 -34.28546 -33.89334 -33.77595 -31.98527 -30.55083 -29.29954 -27.73149 -26.85147 -25.71099 -24.94765 -23.93208 -22.85777 -22.19357 -21.29740 -20.47351 -19.98776 -19.66946 -18.38546 -17.71323 -17.30452 -16.79091 -16.57922 -16.24742 -16.03429 -15.94106 -15.64812 -15.18608 -15.10222 -14.97240 -14.73616 -14.62120 -14.47837 -14.31891 -14.03836 -13.78612 -13.63841 -13.43708 -13.21070 -12.90688 -12.87080 -12.59350 -12.50714 -12.34413 -12.10471 -12.08891 -11.97907 -11.88546 -11.80782 -11.74342 -11.65059 -11.53683 -11.25363 -11.18280 -11.04371 -11.01258 -10.79980 -10.46870 -9.66184 -9.27973 -8.01876 -5.33551 1.35250 1.37308 1.45545 1.51438 1.79394 2.47692 2.73039 3.30904 3.35970 3.51553 3.58532 3.73425 3.76995 3.89295 3.94667 4.04243 4.11341 4.13324 4.18766 4.22849 4.24377 4.26139 4.30545 4.34574 4.41836 4.51799 4.60353 4.71512 4.75727 4.79471 4.80613 4.87453 4.93804 4.94963 4.99728 5.01602 5.02629 5.07762 5.17015 5.19679 5.24830 5.29642 5.32010 5.38720 5.41579 5.52187 5.55583 5.57141 5.70660 5.77979 6.17767 6.25436 6.30460 7.05981 7.08802 7.84874 8.05131 9.19978 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.003135 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.456226 B = 8928.106774 C = 9339.336442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 H 0.059 0.941 4 N -0.743 5.743 5 C -0.222 4.222 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.251 1.251 13 C 0.094 3.906 14 H 0.083 0.917 15 C 0.089 3.911 16 N -0.613 5.613 17 C 0.509 3.491 18 O -0.587 6.587 19 C -0.101 4.101 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.111 4.111 27 C 0.062 3.938 28 C 0.042 3.958 29 O -0.383 6.383 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.051 0.949 52 H 0.127 0.873 53 H 0.074 0.926 54 H 0.071 0.929 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -13.130 -31.095 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 H 0.077 0.923 4 N -0.387 5.387 5 C -0.353 4.353 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.176 1.176 13 C 0.035 3.965 14 H 0.100 0.900 15 C -0.034 4.034 16 N -0.346 5.346 17 C 0.299 3.701 18 O -0.467 6.467 19 C -0.122 4.122 20 C -0.143 4.143 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.167 4.167 24 C -0.163 4.163 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.060 4.060 28 C -0.035 4.035 29 O -0.302 6.302 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.106 0.894 51 H 0.070 0.930 52 H 0.145 0.855 53 H 0.092 0.908 54 H 0.089 0.911 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.746 -12.492 -30.711 33.268 hybrid contribution 0.769 -0.340 1.127 1.406 sum 3.514 -12.832 -29.584 32.438 Atomic orbital electron populations 1.22123 0.96334 1.01662 1.00618 1.20477 0.94035 0.94635 0.83989 0.92348 1.42718 1.79726 1.09555 1.06746 1.19041 1.34478 0.94395 0.87352 0.92264 1.25402 1.02690 1.02101 0.95266 1.69875 1.54999 1.37568 1.01140 0.85505 0.78259 0.81616 0.77061 1.21140 1.22208 1.17592 1.22665 0.90369 0.85014 0.98481 0.89975 1.22164 0.95712 0.96201 0.89324 1.48328 1.37054 1.19811 1.29444 1.21648 0.78009 0.86155 0.84260 1.90668 1.52950 1.27942 1.75128 1.21772 0.97979 1.00463 0.91983 1.21523 0.93550 1.01133 0.98118 1.22049 1.03049 0.96242 0.95470 1.21642 0.97470 0.94635 1.01970 1.21883 0.94906 0.99829 1.00078 1.21825 0.96777 0.99614 0.98129 1.21792 0.98317 0.95084 1.00241 1.21769 0.97733 0.99261 0.96084 1.22877 0.94405 0.83846 1.04873 1.23240 0.93233 0.98484 0.88495 1.88034 1.70839 1.27000 1.44326 0.92654 0.94713 0.91127 0.79930 0.93488 0.92328 0.90484 0.86350 0.92718 0.92932 0.91868 0.88553 0.91208 0.92669 0.91404 0.91756 0.90635 0.91047 0.90382 0.90797 0.89446 0.93005 0.85496 0.90761 0.91067 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.29 71.98 0.67 -4.43 16 2 C 0.18 6.75 2.81 44.99 0.13 6.88 16 3 H 0.06 2.33 8.08 -2.38 -0.02 2.31 16 4 N -0.74 -35.18 4.05 -322.93 -1.31 -36.49 16 5 C -0.22 -12.80 10.41 84.03 0.87 -11.92 16 6 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 8 N -0.98 -64.56 13.97 21.65 0.30 -64.25 16 9 Si 0.95 47.10 27.74 68.60 1.90 49.01 16 10 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 12 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 13 C 0.09 2.89 2.59 30.84 0.08 2.97 16 14 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 15 C 0.09 3.05 5.81 86.50 0.50 3.55 16 16 N -0.61 -16.37 3.01 -816.54 -2.46 -18.84 16 17 C 0.51 14.14 6.50 87.66 0.57 14.71 16 18 O -0.59 -21.97 15.26 -3.03 -0.05 -22.01 16 19 C -0.10 -1.79 1.34 -11.55 -0.02 -1.80 16 20 C -0.11 -1.97 4.87 30.59 0.15 -1.82 16 21 C -0.13 -1.62 5.33 30.61 0.16 -1.46 16 22 C -0.12 -1.21 5.71 30.60 0.17 -1.03 16 23 C -0.13 -1.07 5.48 30.59 0.17 -0.90 16 24 C -0.13 -0.86 5.47 30.59 0.17 -0.69 16 25 C -0.12 -0.89 5.57 30.60 0.17 -0.72 16 26 C -0.11 -1.47 5.05 30.59 0.15 -1.31 16 27 C 0.06 1.12 6.45 86.35 0.56 1.68 16 28 C 0.04 0.74 6.98 72.08 0.50 1.25 16 29 O -0.38 -10.80 9.24 -148.98 -1.38 -12.17 16 30 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 31 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.37 17.16 4.93 -92.71 -0.46 16.70 16 34 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 35 H 0.06 2.33 6.94 -2.39 -0.02 2.32 16 36 H 0.08 2.94 7.12 -2.39 -0.02 2.92 16 37 H 0.12 1.63 3.02 -2.38 -0.01 1.62 16 38 H 0.05 1.10 7.82 -2.38 -0.02 1.08 16 39 H 0.05 1.27 7.25 -2.39 -0.02 1.25 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 1.00 2.83 -2.39 -0.01 0.99 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.57 4.69 -2.39 -0.01 0.56 16 46 H 0.08 0.53 5.47 -2.39 -0.01 0.51 16 47 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 0.45 5.57 -2.39 -0.01 0.44 16 50 H 0.09 1.11 5.47 -2.39 -0.01 1.09 16 51 H 0.05 0.84 7.60 -2.38 -0.02 0.82 16 52 H 0.13 1.40 3.52 -2.39 -0.01 1.39 16 53 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.63 390.81 2.88 -73.75 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.38 Total: 29.43 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.48 Total: 1.57 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -3.47 Total: -119.58 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.42 Total: -34.19 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.90 Total: 49.01 kcal Total: -76.63 2.88 -73.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734187477.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.092 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds