Wall clock time and date at job start Tue Mar 31 2020 23:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46941 * 2 1 4 4 O 1.42898 * 109.47133 * 239.99963 * 2 1 3 5 5 C 1.42897 * 114.00112 * 86.72661 * 4 2 1 6 6 C 1.54243 * 108.89456 * 234.47958 * 5 4 2 7 7 C 1.50473 * 108.52652 * 159.26676 * 6 5 4 8 8 C 1.54068 * 112.50133 * 94.14686 * 7 6 5 9 9 C 1.54064 * 112.81757 * 318.28498 * 8 7 6 10 10 C 1.50471 * 112.49748 * 318.28571 * 9 8 7 11 11 C 1.45548 * 108.89589 * 111.59681 * 5 4 2 12 12 C 1.50700 * 109.47599 * 119.99323 * 2 1 3 13 13 O 1.21279 * 120.00095 * 109.06755 * 12 2 1 14 14 N 1.34775 * 120.00111 * 289.07397 * 12 2 1 15 15 C 1.47022 * 125.64885 * 354.81707 * 14 12 2 16 16 C 1.54322 * 107.27077 * 181.10678 * 15 14 12 17 17 C 1.55150 * 102.94438 * 22.18924 * 16 15 14 18 18 H 1.08996 * 111.00558 * 82.61362 * 17 16 15 19 19 C 1.53002 * 111.00600 * 206.42789 * 17 16 15 20 20 N 1.46505 * 109.46808 * 293.54321 * 19 17 16 21 21 C 1.36939 * 119.99854 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00030 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99974 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99987 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00309 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47334 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.46915 * 299.99930 * 25 23 21 28 28 H 1.48500 * 109.46788 * 59.99732 * 25 23 21 29 29 C 1.47426 * 125.64561 * 174.86545 * 14 12 2 30 30 H 1.08999 * 109.47010 * 294.62998 * 1 2 3 31 31 H 1.08993 * 109.47467 * 54.63598 * 1 2 3 32 32 H 1.09006 * 109.47066 * 174.64047 * 1 2 3 33 33 H 1.08996 * 108.87380 * 352.99335 * 5 4 2 34 34 H 1.09002 * 109.62837 * 278.97578 * 6 5 4 35 35 H 1.09000 * 109.63021 * 39.55436 * 6 5 4 36 36 H 1.09005 * 108.87121 * 333.36997 * 7 6 5 37 37 H 1.08999 * 108.79687 * 214.87550 * 7 6 5 38 38 H 1.09003 * 108.81378 * 197.42417 * 8 7 6 39 39 H 1.08998 * 108.80778 * 79.14564 * 8 7 6 40 40 H 1.08999 * 108.87935 * 197.50136 * 9 8 7 41 41 H 1.09008 * 108.87350 * 79.05952 * 9 8 7 42 42 H 1.09005 * 109.62774 * 334.44078 * 10 9 8 43 43 H 1.09001 * 109.78866 * 213.95782 * 10 9 8 44 44 H 1.08991 * 108.89560 * 303.44025 * 11 5 4 45 45 H 1.09004 * 108.89368 * 62.03198 * 11 5 4 46 46 H 1.09002 * 109.88731 * 61.68596 * 15 14 12 47 47 H 1.09000 * 110.00726 * 300.59124 * 15 14 12 48 48 H 1.09006 * 110.71670 * 263.82949 * 16 15 14 49 49 H 1.09003 * 110.87425 * 140.62710 * 16 15 14 50 50 H 1.09000 * 109.47383 * 173.54970 * 19 17 16 51 51 H 1.08998 * 109.47386 * 53.54231 * 19 17 16 52 52 H 0.96993 * 120.00003 * 0.02562 * 20 19 17 53 53 H 0.97001 * 120.00061 * 179.97438 * 24 23 21 54 54 H 1.08995 * 110.36647 * 36.99460 * 29 14 12 55 55 H 1.08996 * 110.36801 * 274.66306 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1298 0.1686 -2.3145 6 6 1.3317 -0.4534 -3.4787 7 6 1.0321 0.6259 -4.4834 8 6 2.0791 0.6881 -5.6119 9 6 3.5218 0.5202 -5.0983 10 6 3.7714 1.2803 -3.8238 11 6 3.5411 0.3282 -2.6324 12 6 2.0324 -0.7102 1.2305 13 8 2.5581 -1.7986 1.1303 14 7 1.8975 -0.1360 2.4423 15 6 1.3811 1.2168 2.6968 16 6 1.4362 1.4489 4.2215 17 6 2.5073 0.4288 4.6898 18 1 3.5126 0.8270 4.5524 19 6 2.2766 0.0211 6.1464 20 7 2.5029 1.1764 7.0185 21 6 2.3547 1.0503 8.3740 22 1 2.0714 0.0993 8.8001 23 6 2.5685 2.1450 9.2003 24 7 2.9143 3.3040 8.6810 25 14 2.3657 1.9734 11.0493 26 1 2.6494 3.2769 11.7015 27 1 0.9740 1.5573 11.3581 28 1 3.3130 0.9492 11.5582 29 6 2.2443 -0.7601 3.7322 30 1 -0.3633 0.4283 0.9342 31 1 -0.3634 0.5947 -0.8380 32 1 -0.3633 -1.0232 -0.0960 33 1 1.7077 1.1462 -2.0815 34 1 1.9232 -1.2383 -3.9500 35 1 0.3985 -0.8712 -3.1009 36 1 1.0082 1.5878 -3.9711 37 1 0.0522 0.4358 -4.9214 38 1 1.9954 1.6507 -6.1165 39 1 1.8677 -0.1030 -6.3313 40 1 4.2121 0.8770 -5.8627 41 1 3.7119 -0.5384 -4.9205 42 1 3.0819 2.1220 -3.7585 43 1 4.7981 1.6459 -3.8072 44 1 4.0571 0.7255 -1.7584 45 1 3.9606 -0.6479 -2.8762 46 1 0.3514 1.2924 2.3473 47 1 2.0006 1.9545 2.1869 48 1 0.4711 1.2324 4.6797 49 1 1.7492 2.4682 4.4481 50 1 2.9686 -0.7773 6.4142 51 1 1.2519 -0.3303 6.2674 52 1 2.7576 2.0304 6.6358 53 1 3.0634 4.0690 9.2584 54 1 3.1418 -1.3700 3.6293 55 1 1.4137 -1.3643 4.0968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752951776.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:30 Heat of formation + Delta-G solvation = -105.825738 kcal Electronic energy + Delta-G solvation = -30122.777918 eV Core-core repulsion = 26158.371284 eV Total energy + Delta-G solvation = -3964.406634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.49209 -40.43687 -38.93909 -37.63849 -36.45417 -34.16953 -33.24064 -32.97479 -31.90611 -31.11870 -30.21178 -27.33288 -25.87974 -25.71383 -24.96128 -24.05763 -23.49909 -21.75275 -21.36870 -20.42846 -20.12529 -19.14541 -18.48080 -18.02865 -17.26235 -16.92612 -16.57400 -16.25354 -16.12023 -15.72775 -15.44225 -15.30924 -14.97052 -14.89478 -14.63330 -14.46855 -14.29385 -13.98022 -13.92075 -13.83217 -13.66828 -13.20735 -13.11200 -13.03103 -12.97228 -12.95435 -12.72541 -12.54751 -12.24709 -12.14541 -12.10024 -12.03746 -11.75259 -11.67635 -11.60732 -11.53330 -11.41580 -11.23445 -11.12000 -10.91289 -10.87854 -10.47235 -9.73335 -8.98131 -7.93885 -5.22076 1.47325 1.49199 1.51539 1.57501 1.63116 2.57180 2.73019 3.30222 3.40002 3.60165 3.62712 3.68086 3.82171 3.85813 3.89159 3.99630 4.03878 4.20190 4.22447 4.25453 4.28699 4.32380 4.36861 4.42624 4.44095 4.49211 4.56774 4.62094 4.62824 4.72549 4.79623 4.82640 4.89471 4.93450 4.99670 5.01406 5.05443 5.11041 5.19041 5.21664 5.22227 5.25518 5.28753 5.32851 5.34117 5.36090 5.40753 5.45938 5.51405 5.58249 6.17775 6.28473 6.44771 7.04571 7.35823 8.10352 8.35255 9.29139 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.001788 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.028452 B =15655.561651 C =15894.924031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.106 0.894 4 O -0.385 6.385 5 C 0.091 3.909 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.106 4.106 11 C -0.137 4.137 12 C 0.523 3.477 13 O -0.576 6.576 14 N -0.613 5.613 15 C 0.098 3.902 16 C -0.116 4.116 17 C -0.096 4.096 18 H 0.075 0.925 19 C 0.164 3.836 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.074 0.926 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.295 1.295 27 H -0.277 1.277 28 H -0.281 1.281 29 C 0.119 3.881 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.017 0.983 51 H 0.029 0.971 52 H 0.377 0.623 53 H 0.252 0.748 54 H 0.064 0.936 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -1.129 -30.693 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.124 0.876 4 O -0.304 6.304 5 C 0.034 3.966 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.144 4.144 11 C -0.174 4.174 12 C 0.312 3.688 13 O -0.455 6.455 14 N -0.348 5.348 15 C -0.023 4.023 16 C -0.153 4.153 17 C -0.116 4.116 18 H 0.094 0.906 19 C 0.037 3.963 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.221 1.221 27 H -0.203 1.203 28 H -0.207 1.207 29 C -0.004 4.004 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.035 0.965 51 H 0.046 0.954 52 H 0.209 0.791 53 H 0.060 0.940 54 H 0.083 0.917 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.696 -2.032 -30.700 31.290 hybrid contribution 0.431 0.178 1.363 1.441 sum -5.265 -1.854 -29.336 29.862 Atomic orbital electron populations 1.22289 0.91570 1.03621 1.04888 1.22004 0.96413 0.95987 0.83626 0.87624 1.88090 1.86745 1.37158 1.18415 1.21343 0.96045 0.93906 0.85268 1.21554 0.99993 0.99003 0.94963 1.21275 0.99228 0.98573 0.96161 1.21925 0.93574 1.02309 0.97612 1.21368 0.97115 1.00203 0.97298 1.21216 1.02296 0.97780 0.93076 1.20893 0.96628 1.00496 0.99426 1.20755 0.78296 0.85612 0.84131 1.90686 1.45071 1.23456 1.86333 1.48517 1.63695 1.17484 1.05077 1.22396 1.00972 0.82266 0.96664 1.22574 0.99278 0.99903 0.93594 1.22339 1.00034 0.95704 0.93526 0.90612 1.20642 0.97671 0.89786 0.88160 1.42439 1.83589 1.09437 1.02851 1.19579 1.38016 0.95831 0.84496 0.90848 1.25512 1.03095 0.95619 1.02239 1.69790 1.55428 1.01078 1.35388 0.85245 0.78068 0.76241 0.80395 1.22099 1.20346 1.20740 1.22105 1.00792 0.95428 0.82124 0.89561 0.88706 0.92515 0.90332 0.92048 0.91276 0.91192 0.90958 0.91206 0.92173 0.91499 0.93044 0.90420 0.91163 0.92897 0.92761 0.88258 0.89393 0.90390 0.89906 0.96545 0.95357 0.79086 0.93973 0.91733 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.40 71.98 0.68 -1.73 16 2 C 0.08 1.61 2.34 29.85 0.07 1.68 16 3 H 0.11 1.55 7.32 -2.38 -0.02 1.53 16 4 O -0.38 -9.08 9.09 -130.18 -1.18 -10.27 16 5 C 0.09 1.45 2.09 28.74 0.06 1.51 16 6 C -0.12 -1.60 5.25 30.20 0.16 -1.45 16 7 C -0.11 -1.04 5.31 30.14 0.16 -0.88 16 8 C -0.12 -1.02 5.85 31.32 0.18 -0.84 16 9 C -0.12 -1.30 5.31 30.14 0.16 -1.14 16 10 C -0.11 -1.20 5.61 30.20 0.17 -1.03 16 11 C -0.14 -2.24 4.82 28.74 0.14 -2.10 16 12 C 0.52 14.82 7.16 87.66 0.63 15.45 16 13 O -0.58 -22.14 16.77 15.78 0.26 -21.88 16 14 N -0.61 -15.45 3.33 -811.79 -2.70 -18.15 16 15 C 0.10 1.86 6.13 86.73 0.53 2.39 16 16 C -0.12 -2.92 6.13 31.78 0.19 -2.72 16 17 C -0.10 -2.93 3.10 -9.40 -0.03 -2.96 16 18 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 19 C 0.16 6.31 5.71 86.38 0.49 6.80 16 20 N -0.74 -36.28 5.45 -343.45 -1.87 -38.15 16 21 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 25 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 C 0.12 3.36 6.40 86.86 0.56 3.92 16 30 H 0.09 1.04 5.82 -2.39 -0.01 1.03 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.08 0.92 6.66 -2.39 -0.02 0.91 16 34 H 0.06 0.97 6.98 -2.39 -0.02 0.96 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.53 6.63 -2.38 -0.02 0.52 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.67 6.63 -2.38 -0.02 0.65 16 42 H 0.08 0.71 6.98 -2.38 -0.02 0.70 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.05 1.07 7.46 -2.39 -0.02 1.05 16 46 H 0.10 1.34 6.09 -2.39 -0.01 1.33 16 47 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 48 H 0.08 2.03 8.01 -2.38 -0.02 2.01 16 49 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.03 1.07 8.11 -2.39 -0.02 1.05 16 52 H 0.38 19.33 7.53 -92.71 -0.70 18.63 16 53 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 54 H 0.06 2.01 7.99 -2.39 -0.02 1.99 16 55 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -71.89 416.81 2.43 -69.46 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.16 Total: 28.30 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.46 Total: 0.55 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.29 Total: -113.68 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.92 Total: -32.14 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.89 2.43 -69.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752951776.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.369 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds