Wall clock time and date at job start Tue Mar 31 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 O 1.42898 * 109.46834 * 119.99760 * 2 1 3 5 5 C 1.42909 * 113.99929 * 208.57136 * 4 2 1 6 6 C 1.50472 * 108.87634 * 87.75062 * 5 4 2 7 7 C 1.54244 * 108.52144 * 214.92970 * 6 5 4 8 8 C 1.45543 * 112.40488 * 280.01466 * 7 6 5 9 9 C 1.54241 * 112.40122 * 61.93882 * 8 7 6 10 10 C 1.50473 * 108.52270 * 280.00440 * 9 8 7 11 11 C 1.54060 * 112.49563 * 94.15513 * 10 9 8 12 12 C 1.50697 * 109.47327 * 239.99506 * 2 1 3 13 13 O 1.21283 * 120.00677 * 244.99869 * 12 2 1 14 14 N 1.34786 * 119.99974 * 65.00260 * 12 2 1 15 15 C 1.46499 * 119.99902 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46711 * 174.91052 * 15 14 12 17 17 H 1.09006 * 109.87406 * 54.43971 * 16 15 14 18 18 C 1.54322 * 109.88591 * 293.42274 * 16 15 14 19 19 C 1.55148 * 102.94379 * 218.39365 * 18 16 15 20 20 C 1.54906 * 101.58611 * 35.49951 * 19 18 16 21 21 N 1.47026 * 109.88310 * 175.61472 * 16 15 14 22 22 C 1.36939 * 125.64704 * 298.33953 * 21 16 15 23 23 H 1.08001 * 119.99940 * 345.81763 * 22 21 16 24 24 C 1.38807 * 120.00113 * 165.81648 * 22 21 16 25 25 N 1.31623 * 119.99750 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00290 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46948 * 89.99777 * 26 24 22 28 28 H 1.48498 * 109.47366 * 210.00011 * 26 24 22 29 29 H 1.48506 * 109.46979 * 330.00167 * 26 24 22 30 30 H 1.08998 * 109.46894 * 63.73691 * 1 2 3 31 31 H 1.09004 * 109.47047 * 183.73052 * 1 2 3 32 32 H 1.08995 * 109.47465 * 303.73324 * 1 2 3 33 33 H 1.09008 * 108.84909 * 329.28618 * 5 4 2 34 34 H 1.09001 * 109.62584 * 95.22179 * 6 5 4 35 35 H 1.08994 * 109.62912 * 334.63958 * 6 5 4 36 36 H 1.09009 * 108.89198 * 159.26547 * 7 6 5 37 37 H 1.08995 * 108.89776 * 40.77433 * 7 6 5 38 38 H 1.09002 * 108.89593 * 182.68949 * 8 7 6 39 39 H 1.09001 * 108.89522 * 301.18684 * 8 7 6 40 40 H 1.08998 * 109.62952 * 39.72022 * 9 8 7 41 41 H 1.09002 * 109.62304 * 160.29856 * 9 8 7 42 42 H 1.08997 * 108.87944 * 214.93859 * 10 9 8 43 43 H 1.08998 * 108.87621 * 333.37913 * 10 9 8 44 44 H 1.09000 * 108.81412 * 79.14530 * 11 10 9 45 45 H 1.09002 * 108.81540 * 197.42332 * 11 10 9 46 46 H 0.96996 * 119.99303 * 359.97438 * 14 12 2 47 47 H 1.08999 * 109.47114 * 294.90524 * 15 14 12 48 48 H 1.08991 * 109.47223 * 54.90901 * 15 14 12 49 49 H 1.09007 * 110.71936 * 336.75533 * 18 16 15 50 50 H 1.09006 * 110.72070 * 100.02367 * 18 16 15 51 51 H 1.09004 * 111.00636 * 153.57930 * 19 18 16 52 52 H 1.09004 * 111.00694 * 277.42316 * 19 18 16 53 53 H 1.08997 * 110.36822 * 81.82862 * 20 19 18 54 54 H 1.09005 * 110.36838 * 204.04507 * 20 19 18 55 55 H 0.96999 * 119.99707 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2810 -0.2158 1.6226 6 6 3.0755 0.9457 2.5570 7 6 4.2368 1.9421 2.3628 8 6 5.4435 1.5313 3.0652 9 6 5.9899 0.1820 2.5555 10 6 5.1897 -0.9261 3.1847 11 6 4.0211 -1.3886 2.2938 12 6 2.0324 -0.7105 -1.2304 13 8 2.6531 -1.7467 -1.1214 14 7 1.7920 -0.1943 -2.4520 15 6 2.2799 -0.8853 -3.6481 16 6 1.7682 -0.1653 -4.8974 17 1 2.0437 0.8886 -4.8566 18 6 0.2340 -0.3034 -4.9914 19 6 -0.0051 -0.4933 -6.5126 20 6 1.2359 -1.3254 -6.9212 21 7 2.3371 -0.7878 -6.1017 22 6 3.6694 -0.8566 -6.4110 23 1 4.3802 -0.2438 -5.8766 24 6 4.1062 -1.7139 -7.4115 25 7 3.2400 -2.4611 -8.0625 26 14 5.9234 -1.8072 -7.8341 27 1 6.5726 -2.8504 -7.0000 28 1 6.0807 -2.1525 -9.2697 29 1 6.5615 -0.4929 -7.5682 30 1 -0.3633 0.4547 -0.9216 31 1 -0.3633 -1.0255 0.0669 32 1 -0.3634 0.5706 0.8546 33 1 3.8614 0.1224 0.7641 34 1 3.0669 0.5897 3.5872 35 1 2.1297 1.4367 2.3283 36 1 3.9285 2.9199 2.7329 37 1 4.4581 2.0233 1.2986 38 1 6.2085 2.2959 2.9295 39 1 5.2202 1.4428 4.1284 40 1 5.8925 0.1337 1.4709 41 1 7.0382 0.0818 2.8367 42 1 5.8481 -1.7745 3.3714 43 1 4.7904 -0.5761 4.1366 44 1 4.4100 -2.0486 1.5184 45 1 3.3126 -1.9475 2.9052 46 1 1.2953 0.6343 -2.5392 47 1 3.3699 -0.8843 -3.6491 48 1 1.9175 -1.9132 -3.6471 49 1 -0.1095 -1.1757 -4.4352 50 1 -0.2573 0.6014 -4.6337 51 1 -0.9254 -1.0476 -6.6972 52 1 -0.0191 0.4667 -7.0288 53 1 1.0761 -2.3800 -6.6970 54 1 1.4498 -1.1919 -7.9817 55 1 3.5452 -3.0599 -8.7618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753111286.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:54 Heat of formation + Delta-G solvation = -103.204263 kcal Electronic energy + Delta-G solvation = -30956.946539 eV Core-core repulsion = 26992.653581 eV Total energy + Delta-G solvation = -3964.292958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.33008 -40.14582 -39.26005 -37.71861 -35.79156 -34.45773 -33.52852 -33.07987 -31.54765 -31.18603 -30.06012 -26.82444 -26.07527 -25.88394 -25.13258 -24.37977 -22.05476 -21.53472 -21.41698 -21.07155 -20.46398 -18.97989 -18.25589 -18.22865 -17.34754 -16.80756 -16.39858 -16.32300 -16.08651 -15.81158 -15.61103 -15.22357 -15.00329 -14.83090 -14.56861 -14.38449 -13.98812 -13.96004 -13.80075 -13.67509 -13.42407 -13.39343 -13.21656 -13.02371 -12.94594 -12.86598 -12.71399 -12.45029 -12.22815 -12.03093 -11.96934 -11.88327 -11.73558 -11.63397 -11.49503 -11.40717 -11.35195 -11.26545 -11.19121 -11.15181 -10.71347 -10.26954 -10.09724 -8.88130 -7.90914 -5.28396 1.41243 1.44194 1.51566 1.57913 2.04679 2.46414 2.63329 3.28734 3.58616 3.62304 3.76529 3.82784 3.94929 3.97423 3.98434 4.01955 4.06086 4.14829 4.24233 4.25170 4.26605 4.30443 4.43899 4.45274 4.52968 4.54280 4.69004 4.71438 4.82775 4.86226 4.93872 4.95897 4.99426 5.02608 5.05975 5.13796 5.16836 5.20572 5.21856 5.26737 5.28088 5.30831 5.35662 5.37951 5.44953 5.48256 5.51357 5.56295 5.65362 5.76793 6.13001 6.20986 6.60991 7.06779 7.27328 7.74185 8.39753 9.19919 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.002780 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.043566 B =10069.111171 C =11599.488736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.114 0.886 4 O -0.375 6.375 5 C 0.093 3.907 6 C -0.132 4.132 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.126 4.126 10 C -0.107 4.107 11 C -0.114 4.114 12 C 0.476 3.524 13 O -0.585 6.585 14 N -0.703 5.703 15 C 0.130 3.870 16 C 0.149 3.851 17 H 0.055 0.945 18 C -0.112 4.112 19 C -0.133 4.133 20 C 0.172 3.828 21 N -0.611 5.611 22 C -0.240 4.240 23 H 0.076 0.924 24 C -0.060 4.060 25 N -0.946 5.946 26 Si 0.971 3.029 27 H -0.292 1.292 28 H -0.290 1.290 29 H -0.266 1.266 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.417 0.583 47 H 0.028 0.972 48 H 0.031 0.969 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.082 0.918 52 H 0.072 0.928 53 H -0.012 1.012 54 H 0.037 0.963 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 13.472 23.492 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.131 0.869 4 O -0.293 6.293 5 C 0.036 3.964 6 C -0.170 4.170 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.145 4.145 11 C -0.152 4.152 12 C 0.263 3.737 13 O -0.465 6.465 14 N -0.357 5.357 15 C 0.003 3.997 16 C 0.042 3.958 17 H 0.072 0.928 18 C -0.149 4.149 19 C -0.172 4.172 20 C 0.047 3.953 21 N -0.336 5.336 22 C -0.369 4.369 23 H 0.094 0.906 24 C -0.254 4.254 25 N -0.594 5.594 26 Si 0.799 3.201 27 H -0.220 1.220 28 H -0.216 1.216 29 H -0.191 1.191 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.254 0.746 47 H 0.046 0.954 48 H 0.049 0.951 49 H 0.081 0.919 50 H 0.128 0.872 51 H 0.100 0.900 52 H 0.091 0.909 53 H 0.006 0.994 54 H 0.055 0.945 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.076 12.493 23.502 27.096 hybrid contribution 1.390 -0.725 -1.151 1.945 sum -3.686 11.768 22.351 25.527 Atomic orbital electron populations 1.21872 0.88787 1.03578 1.05438 1.22230 0.98086 0.95932 0.82083 0.86885 1.88005 1.35807 1.63798 1.41654 1.22090 0.83408 0.94723 0.96183 1.21905 0.99552 0.94999 1.00547 1.20474 0.94997 0.99318 1.00675 1.20503 0.97511 0.96592 1.00822 1.21428 0.99807 0.95298 0.99808 1.21261 0.95569 0.98872 0.98762 1.21897 0.97443 0.96950 0.98864 1.22361 0.79278 0.85629 0.86462 1.90698 1.42375 1.26025 1.87352 1.45883 1.57193 1.27907 1.04760 1.21654 0.97353 0.95692 0.85005 1.21352 0.94168 0.95517 0.84805 0.92756 1.22605 0.93004 1.02993 0.96337 1.22871 0.97593 1.00397 0.96293 1.21277 0.85907 0.93112 0.94957 1.44760 1.02273 1.67227 1.19329 1.19296 0.83567 1.17842 1.16228 0.90609 1.25682 1.01674 0.97893 1.00151 1.70143 1.33609 1.29078 1.26525 0.85200 0.80166 0.78055 0.76684 1.21988 1.21643 1.19051 0.88235 0.92923 0.88391 0.94382 0.90127 0.89959 0.90065 0.93246 0.91497 0.90811 0.93707 0.90897 0.91681 0.90213 0.94604 0.91474 0.74580 0.95365 0.95064 0.91888 0.87226 0.89957 0.90902 0.99369 0.94466 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.53 71.98 0.69 -1.41 16 2 C 0.08 1.68 2.73 29.85 0.08 1.76 16 3 H 0.11 1.74 7.66 -2.39 -0.02 1.73 16 4 O -0.37 -9.73 9.04 -129.99 -1.18 -10.90 16 5 C 0.09 2.10 1.92 30.14 0.06 2.16 16 6 C -0.13 -2.00 5.18 30.20 0.16 -1.85 16 7 C -0.12 -1.54 5.26 28.74 0.15 -1.39 16 8 C -0.12 -1.49 5.26 28.74 0.15 -1.34 16 9 C -0.13 -2.08 5.61 30.20 0.17 -1.91 16 10 C -0.11 -1.83 5.31 30.13 0.16 -1.67 16 11 C -0.11 -2.67 5.49 31.31 0.17 -2.49 16 12 C 0.48 15.03 7.04 87.65 0.62 15.65 16 13 O -0.59 -25.57 16.50 15.95 0.26 -25.31 16 14 N -0.70 -19.95 5.27 -463.06 -2.44 -22.39 16 15 C 0.13 5.12 5.10 86.38 0.44 5.56 16 16 C 0.15 5.64 3.19 45.34 0.14 5.78 16 17 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 18 C -0.11 -3.29 6.20 31.78 0.20 -3.09 16 19 C -0.13 -4.53 7.08 31.98 0.23 -4.30 16 20 C 0.17 8.43 5.42 86.85 0.47 8.90 16 21 N -0.61 -30.86 3.13 -668.26 -2.09 -32.95 16 22 C -0.24 -13.53 9.73 84.03 0.82 -12.71 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 25 N -0.95 -57.76 10.56 21.65 0.23 -57.53 16 26 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 27 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.10 1.02 7.80 -2.39 -0.02 1.00 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.99 6.21 -2.38 -0.01 0.98 16 34 H 0.08 1.12 6.98 -2.39 -0.02 1.11 16 35 H 0.08 1.07 7.72 -2.39 -0.02 1.05 16 36 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 37 H 0.05 0.77 7.47 -2.39 -0.02 0.75 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.78 7.47 -2.39 -0.02 0.76 16 40 H 0.04 0.94 6.97 -2.39 -0.02 0.92 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.09 6.63 -2.39 -0.02 1.07 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.42 7.97 8.11 -92.71 -0.75 7.21 16 47 H 0.03 1.31 7.86 -2.39 -0.02 1.29 16 48 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 49 H 0.06 1.90 7.78 -2.38 -0.02 1.88 16 50 H 0.11 2.19 8.14 -2.38 -0.02 2.18 16 51 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 52 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 53 H -0.01 -0.65 8.07 -2.39 -0.02 -0.67 16 54 H 0.04 2.05 6.90 -2.38 -0.02 2.03 16 55 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -78.18 416.39 2.07 -76.11 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.10 Total: 19.39 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.16 Total: 4.63 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.30 Total: -112.87 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.91 Total: -36.21 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -78.18 2.07 -76.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753111286.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.099 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds