Wall clock time and date at job start Tue Mar 31 2020 23:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 O 1.42903 * 109.47010 * 240.00610 * 2 1 3 5 5 C 1.42895 * 114.00180 * 89.99659 * 4 2 1 6 6 C 1.54067 * 108.87966 * 272.97365 * 5 4 2 7 7 C 1.54057 * 112.81780 * 197.50511 * 6 5 4 8 8 C 1.50477 * 112.50284 * 318.28370 * 7 6 5 9 9 C 1.54239 * 108.51560 * 94.15351 * 8 7 6 10 10 C 1.45543 * 112.40792 * 280.01381 * 9 8 7 11 11 C 1.50473 * 108.87666 * 149.99810 * 5 4 2 12 12 C 1.50699 * 109.47475 * 120.00090 * 2 1 3 13 13 O 1.21286 * 119.99912 * 120.00144 * 12 2 1 14 14 N 1.34774 * 120.00095 * 300.00440 * 12 2 1 15 15 C 1.46497 * 119.99944 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.46970 * 174.96302 * 15 14 12 17 17 H 1.09005 * 109.87272 * 55.56808 * 16 15 14 18 18 C 1.54316 * 109.88622 * 294.54861 * 16 15 14 19 19 C 1.55155 * 102.94686 * 218.39198 * 18 16 15 20 20 C 1.54915 * 101.58153 * 35.49695 * 19 18 16 21 21 N 1.47026 * 109.88098 * 176.73905 * 16 15 14 22 22 C 1.36937 * 125.64875 * 298.34006 * 21 16 15 23 23 H 1.07998 * 120.00074 * 345.84764 * 22 21 16 24 24 C 1.38811 * 119.99970 * 165.85101 * 22 21 16 25 25 N 1.31620 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00040 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47150 * 60.00093 * 26 24 22 28 28 H 1.48502 * 109.47278 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47389 * 299.99770 * 26 24 22 30 30 H 1.09004 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46831 * 299.99603 * 1 2 3 32 32 H 1.08997 * 109.47619 * 59.99337 * 1 2 3 33 33 H 1.09002 * 108.85343 * 31.44007 * 5 4 2 34 34 H 1.08993 * 108.81478 * 318.37163 * 6 5 4 35 35 H 1.09003 * 108.80640 * 76.64533 * 6 5 4 36 36 H 1.09006 * 108.87492 * 197.50976 * 7 6 5 37 37 H 1.09002 * 108.87897 * 79.06468 * 7 6 5 38 38 H 1.08998 * 109.62816 * 334.44793 * 8 7 6 39 39 H 1.08993 * 109.63151 * 213.86200 * 8 7 6 40 40 H 1.09003 * 108.89694 * 40.76592 * 9 8 7 41 41 H 1.09004 * 108.89574 * 159.26247 * 9 8 7 42 42 H 1.08993 * 108.89913 * 182.69594 * 10 9 8 43 43 H 1.09011 * 108.89009 * 301.18429 * 10 9 8 44 44 H 1.09001 * 109.63044 * 95.21529 * 11 5 4 45 45 H 1.09002 * 109.62841 * 334.63827 * 11 5 4 46 46 H 0.97003 * 120.00216 * 359.97438 * 14 12 2 47 47 H 1.09001 * 109.47239 * 294.96245 * 15 14 12 48 48 H 1.08998 * 109.47302 * 54.96293 * 15 14 12 49 49 H 1.09003 * 110.72118 * 336.75393 * 18 16 15 50 50 H 1.08996 * 110.72255 * 100.02307 * 18 16 15 51 51 H 1.09001 * 111.01029 * 153.57495 * 19 18 16 52 52 H 1.08999 * 111.00520 * 277.42981 * 19 18 16 53 53 H 1.09004 * 110.36265 * 81.83304 * 20 19 18 54 54 H 1.08999 * 110.36768 * 204.03983 * 20 19 18 55 55 H 0.96997 * 120.00508 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.1999 0.1831 -2.2941 6 6 0.8719 0.2985 -3.0665 7 6 1.0591 0.8289 -4.5008 8 6 2.0493 1.9597 -4.5719 9 6 3.4356 1.3761 -4.9133 10 6 4.0997 0.8070 -3.7500 11 6 3.3126 -0.3717 -3.1417 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1947 -0.9410 3.6506 16 6 1.7908 -0.1504 4.8967 17 1 0.7113 0.0004 4.9061 18 6 2.5115 1.2141 4.9091 19 6 2.8559 1.4118 6.4089 20 6 3.1680 -0.0400 6.8503 21 7 2.2081 -0.8754 6.1058 22 6 1.7763 -2.1201 6.4790 23 1 0.9116 -2.5572 6.0019 24 6 2.4500 -2.8201 7.4705 25 7 3.5040 -2.2876 8.0516 26 14 1.8605 -4.5179 7.9800 27 1 1.9008 -5.4283 6.8076 28 1 2.7443 -5.0486 9.0488 29 1 0.4682 -4.4266 8.4882 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.4869 1.1729 -1.9391 34 1 0.4060 -0.6857 -3.1137 35 1 0.2084 0.9735 -2.5259 36 1 0.0971 1.1784 -4.8758 37 1 1.4080 0.0142 -5.1354 38 1 2.0934 2.4689 -3.6092 39 1 1.7469 2.6630 -5.3478 40 1 3.3151 0.5978 -5.6669 41 1 4.0609 2.1688 -5.3240 42 1 5.0888 0.4564 -4.0445 43 1 4.2133 1.5835 -2.9934 44 1 2.8941 -0.9836 -3.9407 45 1 3.9771 -0.9758 -2.5239 46 1 1.1493 0.5388 2.5436 47 1 1.7593 -1.9392 3.6967 48 1 3.2809 -1.0202 3.6068 49 1 3.4191 1.1764 4.3067 50 1 1.8474 2.0042 4.5585 51 1 3.7295 2.0527 6.5281 52 1 2.0024 1.8115 6.9564 53 1 4.1904 -0.3065 6.5822 54 1 3.0170 -0.1508 7.9241 55 1 3.9746 -2.7766 8.7447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753111287.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:59 Heat of formation + Delta-G solvation = -100.538584 kcal Electronic energy + Delta-G solvation = -30527.269896 eV Core-core repulsion = 26563.092530 eV Total energy + Delta-G solvation = -3964.177366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.23469 -40.21721 -39.26326 -37.79111 -35.80314 -34.44403 -33.30088 -33.09934 -31.56417 -31.23605 -30.04998 -26.83718 -26.19788 -25.71755 -25.19742 -24.23979 -22.07177 -21.67126 -21.33221 -21.01038 -20.47276 -18.92478 -18.12075 -18.07956 -17.24738 -16.87229 -16.50478 -16.27793 -16.22345 -15.75595 -15.56430 -15.39821 -14.97786 -14.75123 -14.63055 -14.17166 -14.05334 -13.97770 -13.91043 -13.65999 -13.49543 -13.36873 -13.20078 -12.98286 -12.87746 -12.79487 -12.66530 -12.41997 -12.23384 -12.07184 -11.92616 -11.86025 -11.72756 -11.58808 -11.48508 -11.39722 -11.24590 -11.23043 -11.10440 -10.84956 -10.68805 -10.41064 -10.10128 -8.87241 -7.89574 -5.27039 1.42450 1.46372 1.51610 1.57912 1.86821 2.47277 2.89475 3.29865 3.59513 3.66742 3.76936 3.80252 3.93572 3.97065 3.98375 4.05791 4.09498 4.16427 4.24685 4.26915 4.33219 4.35887 4.44962 4.49496 4.53906 4.55632 4.64765 4.72654 4.77108 4.92020 4.93771 4.96308 5.00009 5.03360 5.10357 5.14714 5.16834 5.21439 5.25637 5.33568 5.34427 5.35789 5.36018 5.43173 5.46256 5.49779 5.56713 5.57405 5.66340 5.77936 6.21921 6.22804 6.61734 7.08008 7.27441 7.75414 8.40820 9.20991 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.002169 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.489707 B =12905.901533 C =13376.490115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.386 6.386 5 C 0.089 3.911 6 C -0.137 4.137 7 C -0.113 4.113 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.111 4.111 11 C -0.119 4.119 12 C 0.501 3.499 13 O -0.584 6.584 14 N -0.701 5.701 15 C 0.130 3.870 16 C 0.149 3.851 17 H 0.056 0.944 18 C -0.112 4.112 19 C -0.133 4.133 20 C 0.172 3.828 21 N -0.611 5.611 22 C -0.240 4.240 23 H 0.076 0.924 24 C -0.061 4.061 25 N -0.946 5.946 26 Si 0.971 3.029 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.417 0.583 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.063 0.937 50 H 0.109 0.891 51 H 0.082 0.918 52 H 0.072 0.928 53 H -0.011 1.011 54 H 0.037 0.963 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 16.361 -25.514 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 H 0.135 0.865 4 O -0.305 6.305 5 C 0.032 3.968 6 C -0.175 4.175 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.149 4.149 11 C -0.157 4.157 12 C 0.288 3.712 13 O -0.464 6.464 14 N -0.355 5.355 15 C 0.003 3.997 16 C 0.041 3.959 17 H 0.074 0.926 18 C -0.150 4.150 19 C -0.172 4.172 20 C 0.047 3.953 21 N -0.336 5.336 22 C -0.370 4.370 23 H 0.094 0.906 24 C -0.255 4.255 25 N -0.593 5.593 26 Si 0.800 3.200 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.197 1.197 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.255 0.745 47 H 0.048 0.952 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.127 0.873 51 H 0.101 0.899 52 H 0.091 0.909 53 H 0.007 0.993 54 H 0.055 0.945 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.024 15.302 -25.424 30.279 hybrid contribution 0.061 -1.350 0.860 1.601 sum -5.963 13.952 -24.564 28.873 Atomic orbital electron populations 1.22409 0.91592 1.03296 1.05331 1.22061 0.96398 0.96326 0.83431 0.86512 1.88112 1.86508 1.36235 1.19630 1.22311 0.95503 0.93206 0.85791 1.22537 0.96498 1.01809 0.96645 1.21285 1.00231 0.98367 0.95209 1.21390 0.94316 0.97639 1.02341 1.20523 0.96915 1.00575 0.97690 1.20413 0.99035 0.96784 0.98631 1.21465 0.96624 0.98780 0.98843 1.21339 0.79705 0.84488 0.85710 1.90708 1.39719 1.28559 1.87371 1.45748 1.53307 1.32204 1.04274 1.21683 0.97377 0.95865 0.84727 1.21358 0.97908 0.91982 0.84620 0.92646 1.22606 1.00504 0.95359 0.96515 1.22874 1.01710 0.96233 0.96343 1.21285 0.90320 0.88001 0.95668 1.44752 1.51022 1.16473 1.21314 1.19264 1.08227 0.92364 1.17112 0.90576 1.25686 0.97427 1.01782 1.00560 1.70130 1.21867 1.38504 1.28845 0.85265 0.77622 0.79949 0.77211 1.21083 1.21891 1.19726 0.93184 0.88817 0.88673 0.91102 0.92372 0.90421 0.90953 0.92321 0.91521 0.90667 0.92056 0.91262 0.91709 0.91895 0.90941 0.92922 0.74490 0.95197 0.94912 0.91845 0.87251 0.89943 0.90914 0.99314 0.94451 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.18 71.98 0.66 -1.98 16 2 C 0.08 1.70 3.14 29.85 0.09 1.80 16 3 H 0.12 1.71 7.36 -2.38 -0.02 1.70 16 4 O -0.39 -10.09 9.05 -129.94 -1.18 -11.26 16 5 C 0.09 1.57 2.12 30.14 0.06 1.64 16 6 C -0.14 -1.84 4.67 31.31 0.15 -1.69 16 7 C -0.11 -1.16 5.31 30.14 0.16 -1.00 16 8 C -0.12 -1.06 5.61 30.20 0.17 -0.89 16 9 C -0.12 -1.21 5.26 28.74 0.15 -1.06 16 10 C -0.11 -1.49 5.26 28.74 0.15 -1.34 16 11 C -0.12 -2.20 5.32 30.20 0.16 -2.03 16 12 C 0.50 16.10 7.23 87.66 0.63 16.73 16 13 O -0.58 -26.26 16.50 15.99 0.26 -26.00 16 14 N -0.70 -19.94 5.23 -463.06 -2.42 -22.36 16 15 C 0.13 5.13 5.08 86.38 0.44 5.57 16 16 C 0.15 5.62 3.21 45.34 0.15 5.76 16 17 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 18 C -0.11 -3.28 6.14 31.78 0.20 -3.09 16 19 C -0.13 -4.51 7.09 31.99 0.23 -4.28 16 20 C 0.17 8.40 5.42 86.86 0.47 8.87 16 21 N -0.61 -30.81 3.13 -668.24 -2.09 -32.90 16 22 C -0.24 -13.56 9.75 84.03 0.82 -12.74 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.06 -3.53 5.47 84.86 0.46 -3.06 16 25 N -0.95 -57.74 10.56 21.65 0.23 -57.51 16 26 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 27 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.04 7.56 -2.39 -0.02 1.02 16 32 H 0.09 1.04 5.61 -2.39 -0.01 1.03 16 33 H 0.07 1.04 5.84 -2.39 -0.01 1.03 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.80 6.26 -2.39 -0.01 0.78 16 36 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.06 0.66 6.63 -2.39 -0.02 0.65 16 38 H 0.07 0.59 6.97 -2.39 -0.02 0.57 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.63 7.47 -2.39 -0.02 0.62 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.82 7.47 -2.38 -0.02 0.80 16 44 H 0.07 1.28 6.98 -2.39 -0.02 1.26 16 45 H 0.05 1.26 7.98 -2.39 -0.02 1.24 16 46 H 0.42 7.94 7.78 -92.71 -0.72 7.22 16 47 H 0.03 1.39 7.90 -2.39 -0.02 1.37 16 48 H 0.03 1.50 8.06 -2.39 -0.02 1.48 16 49 H 0.06 1.89 7.80 -2.39 -0.02 1.87 16 50 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 52 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 53 H -0.01 -0.61 8.07 -2.39 -0.02 -0.63 16 54 H 0.04 2.05 6.90 -2.39 -0.02 2.04 16 55 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -78.79 410.76 2.12 -76.67 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.14 Total: 17.04 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.15 Total: 7.20 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.28 Total: -112.77 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.91 Total: -37.26 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -78.79 2.12 -76.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753111287.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.866 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds