Wall clock time and date at job start Tue Mar 31 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99800 * 2 1 4 4 H 1.09002 * 109.46550 * 329.99446 * 3 2 1 5 5 C 1.52998 * 109.47486 * 89.99780 * 3 2 1 6 6 C 1.53002 * 109.46710 * 210.00121 * 3 2 1 7 7 C 1.50699 * 109.47351 * 64.99487 * 6 3 2 8 8 O 1.21278 * 120.00063 * 0.02562 * 7 6 3 9 9 N 1.34783 * 120.00127 * 179.97438 * 7 6 3 10 10 C 1.46927 * 120.62586 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77502 * 233.58077 * 10 9 7 12 12 C 1.53044 * 109.31077 * 305.36883 * 11 10 9 13 13 C 1.53040 * 109.53954 * 61.36630 * 12 11 10 14 14 H 1.08996 * 109.49661 * 58.58352 * 13 12 11 15 15 C 1.52996 * 109.49818 * 178.68285 * 13 12 11 16 16 C 1.53039 * 109.46072 * 300.02672 * 15 13 12 17 17 C 1.53193 * 109.31426 * 178.60439 * 16 15 13 18 18 N 1.46923 * 108.76821 * 54.65221 * 17 16 15 19 19 C 1.36937 * 120.63433 * 126.36278 * 18 17 16 20 20 H 1.07999 * 120.00210 * 207.69882 * 19 18 17 21 21 C 1.38814 * 119.99702 * 27.70099 * 19 18 17 22 22 N 1.31623 * 119.99832 * 17.35135 * 21 19 18 23 23 Si 1.86796 * 120.00147 * 197.35254 * 21 19 18 24 24 H 1.48500 * 109.47375 * 89.99512 * 23 21 19 25 25 H 1.48502 * 109.47321 * 210.00109 * 23 21 19 26 26 H 1.48508 * 109.47073 * 330.00113 * 23 21 19 27 27 C 1.46932 * 118.73908 * 306.38587 * 18 17 16 28 28 C 1.53040 * 109.46288 * 179.97438 * 15 13 12 29 29 C 1.46921 * 120.62962 * 179.71863 * 9 7 6 30 30 H 1.08999 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46983 * 300.00069 * 1 2 3 32 32 H 1.08998 * 109.47280 * 60.00666 * 1 2 3 33 33 H 1.09001 * 109.46898 * 299.99929 * 5 3 2 34 34 H 1.08998 * 109.46631 * 60.00036 * 5 3 2 35 35 H 1.08997 * 109.46883 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47047 * 184.99852 * 6 3 2 37 37 H 1.09001 * 109.47406 * 304.99499 * 6 3 2 38 38 H 1.08994 * 109.58969 * 353.37087 * 10 9 7 39 39 H 1.09003 * 109.58216 * 113.65503 * 10 9 7 40 40 H 1.09002 * 109.49948 * 65.31521 * 11 10 9 41 41 H 1.08996 * 109.49884 * 185.41889 * 11 10 9 42 42 H 1.09003 * 109.45784 * 181.38660 * 12 11 10 43 43 H 1.09000 * 109.46452 * 301.35632 * 12 11 10 44 44 H 1.09003 * 109.46211 * 59.99625 * 15 13 12 45 45 H 1.09009 * 109.49679 * 298.56310 * 16 15 13 46 46 H 1.08998 * 109.49996 * 58.66296 * 16 15 13 47 47 H 1.09005 * 109.59788 * 294.86595 * 17 16 15 48 48 H 1.08998 * 109.58863 * 174.43819 * 17 16 15 49 49 H 0.97004 * 119.99670 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.58455 * 293.82160 * 27 18 17 51 51 H 1.09001 * 109.58632 * 173.39273 * 27 18 17 52 52 H 1.09008 * 109.49748 * 301.34071 * 28 15 13 53 53 H 1.08996 * 109.49641 * 61.42854 * 28 15 13 54 54 H 1.08993 * 109.58951 * 246.20376 * 29 9 7 55 55 H 1.08998 * 109.59085 * 6.63936 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7716 1.4424 6 6 3.3588 1.2633 -0.7213 7 6 3.1416 0.9235 -2.1733 8 8 2.0186 0.7342 -2.5903 9 7 4.1952 0.8309 -3.0088 10 6 5.5615 1.0580 -2.5184 11 6 6.2293 2.1223 -3.3948 12 6 6.1511 1.6922 -4.8614 13 6 4.6846 1.5710 -5.2819 14 1 4.1841 2.5283 -5.1362 15 6 4.6075 1.1729 -6.7571 16 6 5.2965 2.2406 -7.6100 17 6 5.2480 1.8216 -9.0827 18 7 3.8505 1.5619 -9.4545 19 6 3.2883 2.1871 -10.5354 20 1 2.2236 2.3664 -10.5620 21 6 4.0868 2.5902 -11.5968 22 7 5.2955 2.0888 -11.7386 23 14 3.4462 3.8444 -12.8239 24 1 3.7978 5.2118 -12.3636 25 1 4.0611 3.5959 -14.1526 26 1 1.9700 3.7227 -12.9311 27 6 3.0674 0.6190 -8.6443 28 6 3.1407 1.0514 -7.1765 29 6 3.9998 0.4944 -4.4255 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.2567 1.8016 1.9562 34 1 2.8829 1.0777 1.9562 35 1 2.6605 2.7675 1.4423 36 1 3.8427 2.2371 -0.6444 37 1 3.9931 0.5052 -0.2618 38 1 5.5262 1.4046 -1.4856 39 1 6.1283 0.1285 -2.5728 40 1 5.7142 3.0744 -3.2670 41 1 7.2738 2.2310 -3.1027 42 1 6.6474 2.4359 -5.4849 43 1 6.6446 0.7280 -4.9840 44 1 5.1070 0.2149 -6.9013 45 1 4.7820 3.1935 -7.4855 46 1 6.3350 2.3434 -7.2952 47 1 5.8382 0.9163 -9.2250 48 1 5.6486 2.6227 -9.7039 49 1 5.8537 2.3708 -12.4802 50 1 3.4799 -0.3844 -8.7507 51 1 2.0292 0.6267 -8.9761 52 1 2.6444 0.3076 -6.5529 53 1 2.6468 2.0155 -7.0561 54 1 4.4429 -0.4792 -4.6343 55 1 2.9338 0.4692 -4.6515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754782965.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:00 Heat of formation + Delta-G solvation = -99.292718 kcal Electronic energy + Delta-G solvation = -31036.330416 eV Core-core repulsion = 27072.207075 eV Total energy + Delta-G solvation = -3964.123341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.40477 -39.95202 -38.88761 -37.90495 -35.65817 -34.02034 -33.54275 -32.71842 -31.68100 -30.66529 -29.02952 -27.51049 -26.94846 -26.17921 -24.62074 -23.69918 -22.65099 -22.46474 -21.15695 -20.71603 -19.86280 -18.68921 -18.15897 -17.77390 -17.10232 -16.87176 -16.28816 -15.97183 -15.86415 -15.57813 -15.47177 -15.32498 -15.22291 -14.89156 -14.51473 -14.46659 -14.12433 -13.99832 -13.87794 -13.68466 -13.47344 -13.41243 -13.05794 -12.98344 -12.86992 -12.82228 -12.64079 -12.59793 -12.30948 -12.16069 -12.00222 -11.90615 -11.85984 -11.75776 -11.64294 -11.50541 -11.39521 -11.05503 -10.79267 -10.68351 -10.54687 -10.49640 -9.54877 -8.68523 -7.88429 -5.33508 1.44294 1.45475 1.54692 1.71212 2.05727 2.49612 2.89498 3.24695 3.53011 3.68983 3.73943 3.82152 3.84544 3.94123 4.12509 4.20097 4.20652 4.23850 4.34424 4.43043 4.44057 4.47391 4.54539 4.56713 4.59892 4.64497 4.67411 4.71489 4.73066 4.80346 4.82817 4.86857 4.90896 4.93490 4.93691 5.01486 5.04882 5.09019 5.12814 5.18813 5.28454 5.32799 5.34065 5.40809 5.45144 5.50430 5.56456 5.61331 5.67300 5.80052 6.31086 6.38258 6.50586 7.14286 7.25828 7.86078 8.37649 9.17424 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002351 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.680771 B =11909.492037 C =12745.123506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.402 6.402 3 C 0.091 3.909 4 H 0.050 0.950 5 C -0.166 4.166 6 C -0.132 4.132 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.613 5.613 10 C 0.102 3.898 11 C -0.128 4.128 12 C -0.118 4.118 13 C -0.079 4.079 14 H 0.056 0.944 15 C -0.062 4.062 16 C -0.118 4.118 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.264 4.264 20 H 0.061 0.939 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.271 1.271 27 C 0.141 3.859 28 C -0.116 4.116 29 C 0.120 3.880 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.014 0.986 51 H 0.045 0.955 52 H 0.070 0.930 53 H 0.044 0.956 54 H 0.070 0.930 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -0.452 29.958 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.321 6.321 3 C 0.033 3.967 4 H 0.068 0.932 5 C -0.224 4.224 6 C -0.171 4.171 7 C 0.295 3.705 8 O -0.464 6.464 9 N -0.346 5.346 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.155 4.155 13 C -0.099 4.099 14 H 0.074 0.926 15 C -0.081 4.081 16 C -0.156 4.156 17 C 0.050 3.950 18 N -0.336 5.336 19 C -0.394 4.394 20 H 0.079 0.921 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.795 3.205 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.196 1.196 27 C 0.016 3.984 28 C -0.155 4.155 29 C -0.003 4.003 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.014 0.986 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.032 0.968 51 H 0.064 0.936 52 H 0.088 0.912 53 H 0.063 0.937 54 H 0.088 0.912 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.541 -0.702 29.624 29.672 hybrid contribution -0.678 0.624 -1.624 1.867 sum 0.862 -0.077 28.001 28.014 Atomic orbital electron populations 1.22734 0.80481 1.02933 0.99774 1.87828 1.20608 1.28528 1.95164 1.21992 0.93615 0.84742 0.96338 0.93214 1.22237 1.02965 1.02694 0.94469 1.21971 0.99132 1.06381 0.89651 1.21300 0.83820 0.75849 0.89485 1.90672 1.25094 1.51870 1.78752 1.48290 1.07912 1.69283 1.09097 1.22067 0.80449 0.99901 0.99567 1.21906 1.02325 0.98385 0.93997 1.21646 0.94456 1.02401 0.97016 1.21464 0.97424 0.97972 0.93000 0.92564 1.20920 0.95217 0.98540 0.93466 1.22043 1.00008 0.97807 0.95792 1.20625 0.84442 0.97302 0.92608 1.44347 1.10149 1.48614 1.30455 1.19498 0.93207 1.31188 0.95533 0.92147 1.25783 0.97611 1.02442 0.98818 1.70194 1.11102 1.44524 1.32145 0.85272 0.78031 0.79211 0.77977 1.21074 1.21861 1.19601 1.21035 0.94768 0.91415 0.91218 1.21940 0.96930 1.00527 0.96138 1.21635 1.01056 0.97579 0.80052 0.89439 0.92688 0.95362 0.92257 0.91007 0.89520 0.84561 0.86183 0.86856 0.90075 0.91938 0.88088 0.91463 0.91206 0.91751 0.93981 0.90647 0.98619 0.93029 0.94052 0.96841 0.93608 0.91195 0.93723 0.91202 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.82 113.37 1.23 1.93 16 2 O -0.40 -9.03 9.58 -135.20 -1.30 -10.32 16 3 C 0.09 1.54 2.27 30.59 0.07 1.61 16 4 H 0.05 1.00 7.60 -2.39 -0.02 0.98 16 5 C -0.17 -1.67 9.53 71.98 0.69 -0.98 16 6 C -0.13 -1.83 3.76 29.85 0.11 -1.72 16 7 C 0.51 11.88 7.58 87.66 0.66 12.54 16 8 O -0.58 -19.43 14.83 10.75 0.16 -19.27 16 9 N -0.61 -12.57 2.97 -818.01 -2.43 -14.99 16 10 C 0.10 1.19 6.34 86.36 0.55 1.74 16 11 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 12 C -0.12 -2.27 4.85 30.62 0.15 -2.12 16 13 C -0.08 -2.01 1.94 -10.56 -0.02 -2.03 16 14 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.06 -2.01 1.74 -10.77 -0.02 -2.03 16 16 C -0.12 -4.41 5.04 30.67 0.15 -4.25 16 17 C 0.18 8.70 5.31 86.36 0.46 9.16 16 18 N -0.61 -32.33 2.99 -699.08 -2.09 -34.42 16 19 C -0.26 -15.23 9.58 84.03 0.81 -14.43 16 20 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 21 C -0.05 -2.95 4.91 84.86 0.42 -2.54 16 22 N -0.93 -56.50 11.19 21.65 0.24 -56.26 16 23 Si 0.97 46.23 29.59 68.60 2.03 48.26 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.14 6.29 6.52 86.36 0.56 6.85 16 28 C -0.12 -4.23 5.06 30.67 0.16 -4.08 16 29 C 0.12 3.01 5.22 86.52 0.45 3.46 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 32 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.14 0.98 7.69 -2.38 -0.02 0.97 16 37 H 0.12 1.23 7.94 -2.39 -0.02 1.21 16 38 H 0.11 0.64 5.93 -2.39 -0.01 0.62 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 1.40 6.33 -2.39 -0.02 1.38 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.08 2.43 6.33 -2.39 -0.02 2.41 16 47 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 48 H 0.05 2.89 6.04 -2.39 -0.01 2.87 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 52 H 0.07 2.28 6.49 -2.38 -0.02 2.27 16 53 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 54 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 55 H 0.07 2.09 5.60 -2.39 -0.01 2.07 16 Total: -1.00 -75.60 410.91 4.06 -71.54 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.84 Total: 13.80 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 6.61 Total: 1.67 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.28 Total: -105.67 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.14 Total: -29.59 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -75.60 4.06 -71.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754782965.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.756 kcal (2) G-P(sol) polarization free energy of solvation -75.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds