Wall clock time and date at job start Tue Mar 31 2020 22:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4 10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.42898 * 113.99994 * 269.68067 * 20 19 18 22 22 C 1.54262 * 110.03348 * 267.90654 * 21 20 19 23 23 C 1.54959 * 104.16313 * 217.13846 * 22 21 20 24 24 C 1.54890 * 102.77828 * 37.88381 * 23 22 21 25 25 C 1.53874 * 110.02991 * 150.68724 * 21 20 19 26 26 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 27 27 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 28 28 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 29 29 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 30 30 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 31 31 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 32 32 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 33 33 H 0.97000 * 119.99819 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 35 35 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 36 36 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 37 37 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 38 38 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 39 39 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 40 40 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 41 41 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 42 42 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 43 43 H 1.09002 * 110.01776 * 29.29883 * 21 20 19 44 44 H 1.09007 * 110.48681 * 335.78709 * 22 21 20 45 45 H 1.09003 * 110.48635 * 98.42367 * 22 21 20 46 46 H 1.09000 * 110.71950 * 279.57629 * 23 22 21 47 47 H 1.08993 * 110.92565 * 156.29489 * 23 22 21 48 48 H 1.08998 * 110.49030 * 203.40329 * 24 23 22 49 49 H 1.09004 * 110.59692 * 80.81882 * 24 23 22 50 50 H 1.08997 * 110.03077 * 238.56501 * 25 21 20 51 51 H 1.08998 * 110.03363 * 359.95264 * 25 21 20 52 52 H 1.09005 * 109.50073 * 297.71107 * 26 19 18 53 53 H 1.08991 * 109.50379 * 177.59621 * 26 19 18 54 54 H 1.08989 * 109.46428 * 305.85572 * 27 16 15 55 55 H 1.09002 * 109.45912 * 65.83533 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.1407 3.5938 -4.1345 10 1 4.1794 4.7037 -3.4338 11 1 4.2413 2.3822 -4.1332 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.8945 -5.0824 1.2489 18 6 0.0302 -6.3417 1.1546 19 6 0.9302 -7.5549 0.9037 20 8 0.1239 -8.7257 0.7581 21 6 -0.1239 -9.4169 1.9840 22 6 0.9483 -10.5040 2.2038 23 6 0.1700 -11.6796 2.8467 24 6 -1.1840 -11.6457 2.0954 25 6 -1.4793 -10.1422 1.9154 26 6 1.7364 -7.3261 -0.3779 27 6 2.5512 -6.0382 -0.2392 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 4.0289 4.4448 -0.8502 34 1 0.7584 -2.5298 -0.8904 35 1 0.7590 -2.5302 0.8896 36 1 3.0062 -3.5775 -0.8905 37 1 3.0062 -3.5776 0.8895 38 1 1.5922 -5.1821 2.0805 39 1 0.2554 -4.2148 1.4133 40 1 -0.6771 -6.2369 0.3319 41 1 -0.5148 -6.4800 2.0884 42 1 1.6117 -7.6842 1.7445 43 1 -0.1186 -8.7135 2.8166 44 1 1.3826 -10.8095 1.2519 45 1 1.7238 -10.1438 2.8799 46 1 0.0243 -11.5082 3.9133 47 1 0.6831 -12.6259 2.6757 48 1 -1.9636 -12.1188 2.6925 49 1 -1.0970 -12.1361 1.1258 50 1 -2.1313 -9.7914 2.7153 51 1 -1.9483 -9.9663 0.9474 52 1 1.0559 -7.2368 -1.2248 53 1 2.4102 -8.1675 -0.5390 54 1 3.1153 -5.8648 -1.1555 55 1 3.2409 -6.1336 0.5994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092795356.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:03 Heat of formation + Delta-G solvation = -118.202838 kcal Electronic energy + Delta-G solvation = -29659.447899 eV Core-core repulsion = 25694.504553 eV Total energy + Delta-G solvation = -3964.943345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92991 -40.42543 -39.20377 -36.97872 -36.55922 -34.77831 -34.10712 -31.93626 -31.21138 -29.64389 -29.48427 -28.41688 -27.29160 -25.86280 -24.54834 -24.09307 -22.54877 -21.60735 -21.25375 -20.71889 -19.88116 -18.70035 -18.26667 -17.89060 -17.12767 -16.84966 -16.76459 -16.32296 -16.24953 -15.90860 -15.75001 -15.38383 -15.00580 -14.78490 -14.62200 -14.25042 -14.23511 -14.03944 -13.86126 -13.58967 -13.44462 -13.43643 -13.21034 -13.06666 -12.82418 -12.72233 -12.63264 -12.40719 -12.26628 -12.19147 -12.17470 -12.01106 -11.99517 -11.95575 -11.72192 -11.55037 -11.51891 -11.43142 -11.31262 -10.64600 -10.60074 -10.29002 -9.41400 -9.35467 -8.22682 -6.37888 1.36366 1.40674 1.48050 1.84717 2.28249 2.41850 2.67690 2.94235 3.06624 3.65274 3.66713 3.78052 3.78236 3.90235 4.00398 4.02206 4.10975 4.15989 4.27090 4.30785 4.38983 4.41989 4.46271 4.54537 4.55499 4.58411 4.60940 4.70221 4.72889 4.77708 4.82357 4.87704 4.92523 4.93212 4.97615 4.97802 5.00796 5.04213 5.05258 5.08815 5.17442 5.20497 5.22935 5.24306 5.28508 5.37003 5.45270 5.56019 5.84322 6.00497 6.06011 6.11423 6.41958 6.69262 6.79995 7.27952 7.49123 8.84040 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.001691 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.146055 B =16558.421373 C =16823.975024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.115 4.115 15 C 0.081 3.919 16 N -0.539 5.539 17 C 0.051 3.949 18 C -0.128 4.128 19 C 0.091 3.909 20 O -0.387 6.387 21 C 0.078 3.922 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.104 4.104 27 C 0.058 3.942 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.023 0.977 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.067 0.933 52 H 0.072 0.928 53 H 0.079 0.921 54 H 0.080 0.920 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -30.514 7.305 33.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.155 4.155 15 C -0.047 4.047 16 N -0.264 5.264 17 C -0.077 4.077 18 C -0.166 4.166 19 C 0.033 3.967 20 O -0.307 6.307 21 C 0.020 3.980 22 C -0.187 4.187 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.142 4.142 27 C -0.070 4.070 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.086 0.914 52 H 0.090 0.910 53 H 0.098 0.902 54 H 0.099 0.901 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.329 -30.374 6.801 33.479 hybrid contribution 1.348 1.013 0.099 1.689 sum -10.982 -29.361 6.900 32.098 Atomic orbital electron populations 1.21939 0.77782 1.04048 1.02607 1.48203 1.08480 1.06394 1.71166 1.18745 0.91079 0.80530 0.95980 1.21700 1.36989 1.06607 0.93104 0.92834 1.25876 0.94865 0.96403 1.02062 1.70048 1.38890 1.14751 1.33101 0.85462 0.78872 0.77346 0.79093 1.18409 1.20263 1.20363 1.21382 0.87784 0.86732 0.75783 1.90631 1.16767 1.88287 1.52704 1.21565 0.98869 0.88832 1.06230 1.21591 0.94269 0.87921 1.00920 1.61938 1.27479 1.01351 1.35655 1.22198 0.96787 0.99138 0.89570 1.22020 0.98419 0.93229 1.02947 1.22164 0.91733 0.84903 0.97894 1.87975 1.71325 1.39612 1.31765 1.22977 0.95288 0.93328 0.86358 1.22922 0.98094 0.96427 1.01207 1.22451 0.95652 0.97987 0.99810 1.22343 0.97676 0.95328 1.00660 1.22252 0.95552 0.95563 1.02816 1.21564 0.98655 0.96290 0.97728 1.22066 0.93796 0.89834 1.01291 0.91053 0.91705 0.88664 0.95880 0.98521 0.92398 0.86710 0.86698 0.91686 0.95501 0.94895 0.89156 0.90824 0.90320 0.92273 0.91516 0.91521 0.91323 0.90636 0.90792 0.90308 0.91865 0.90051 0.91408 0.90959 0.90242 0.90137 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.18 2.86 -851.15 -2.43 -28.61 16 3 C 0.26 14.20 5.16 85.63 0.44 14.65 16 4 C -0.55 -32.01 9.38 25.60 0.24 -31.77 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.40 5.46 84.65 0.46 0.87 16 7 N -0.93 -56.83 13.29 21.44 0.28 -56.55 16 8 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.49 20.62 7.67 87.66 0.67 21.29 16 13 O -0.60 -31.59 15.56 -3.04 -0.05 -31.64 16 14 C -0.12 -3.18 4.18 29.85 0.12 -3.06 16 15 C 0.08 2.26 4.25 86.31 0.37 2.63 16 16 N -0.54 -11.80 4.66 -896.37 -4.17 -15.97 16 17 C 0.05 0.92 5.29 86.32 0.46 1.37 16 18 C -0.13 -2.04 5.72 30.65 0.18 -1.87 16 19 C 0.09 1.50 2.51 30.68 0.08 1.58 16 20 O -0.39 -6.94 9.55 -148.98 -1.42 -8.36 16 21 C 0.08 1.07 3.17 31.32 0.10 1.17 16 22 C -0.15 -1.83 6.56 31.69 0.21 -1.62 16 23 C -0.12 -1.14 6.91 31.91 0.22 -0.92 16 24 C -0.12 -1.20 6.83 31.67 0.22 -0.98 16 25 C -0.12 -1.47 6.61 31.32 0.21 -1.26 16 26 C -0.10 -1.82 5.75 30.65 0.18 -1.65 16 27 C 0.06 1.15 5.46 86.32 0.47 1.62 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.09 2.13 6.44 -2.39 -0.02 2.11 16 31 H 0.02 1.28 8.07 -2.39 -0.02 1.27 16 32 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.11 2.81 7.40 -2.39 -0.02 2.79 16 35 H 0.12 2.49 6.39 -2.39 -0.02 2.47 16 36 H 0.06 2.05 7.94 -2.39 -0.02 2.04 16 37 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 1.48 6.21 -2.39 -0.01 1.47 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 42 H 0.06 0.93 7.80 -2.39 -0.02 0.91 16 43 H 0.07 0.83 7.75 -2.39 -0.02 0.81 16 44 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.07 0.96 7.95 -2.39 -0.02 0.94 16 52 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 53 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 55 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -74.49 425.47 0.98 -73.51 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.82 Total: 14.49 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.92 Total: 5.67 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -6.32 Total: -101.13 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.47 Total: -40.00 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.49 0.98 -73.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092795356.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.696 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds