Wall clock time and date at job start Tue Mar 31 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46896 * 109.47255 * 179.97438 * 15 14 12 17 17 C 1.47033 * 110.99758 * 66.04549 * 16 15 14 18 18 C 1.53117 * 109.18356 * 177.43844 * 17 16 15 19 19 O 1.43004 * 109.21243 * 57.04548 * 18 17 16 20 20 C 1.43038 * 113.79356 * 301.32444 * 19 18 17 21 21 C 1.47003 * 110.99921 * 302.45318 * 16 15 14 22 22 C 1.50471 * 110.78062 * 296.10607 * 20 19 18 23 23 C 1.54071 * 112.43421 * 335.04816 * 22 20 19 24 24 C 1.54065 * 112.80556 * 318.30601 * 23 22 20 25 25 C 1.50471 * 112.53374 * 318.27471 * 24 23 22 26 26 C 1.54258 * 108.56454 * 94.14106 * 25 24 23 27 27 C 1.45533 * 112.36716 * 280.10212 * 26 25 24 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 1.08996 * 109.52029 * 297.34859 * 17 16 15 39 39 H 1.09000 * 109.51981 * 57.47021 * 17 16 15 40 40 H 1.08997 * 109.51668 * 176.97008 * 18 17 16 41 41 H 1.09003 * 109.51604 * 297.12867 * 18 17 16 42 42 H 1.08997 * 109.50334 * 302.31894 * 21 16 15 43 43 H 1.09000 * 109.49863 * 62.42392 * 21 16 15 44 44 H 1.09006 * 108.88633 * 95.80373 * 22 20 19 45 45 H 1.08991 * 108.89154 * 214.28186 * 22 20 19 46 46 H 1.08997 * 108.81360 * 197.44740 * 23 22 20 47 47 H 1.09000 * 108.73058 * 79.10672 * 23 22 20 48 48 H 1.09003 * 108.87255 * 197.48845 * 24 23 22 49 49 H 1.09001 * 108.87545 * 79.06332 * 24 23 22 50 50 H 1.09007 * 109.62110 * 334.42125 * 25 24 23 51 51 H 1.09000 * 109.62504 * 213.86704 * 25 24 23 52 52 H 1.08998 * 108.90598 * 159.35326 * 26 25 24 53 53 H 1.08999 * 108.82736 * 40.78956 * 26 25 24 54 54 H 1.08999 * 108.89337 * 301.16010 * 27 26 25 55 55 H 1.08997 * 108.89638 * 182.66525 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 1.6454 -4.9073 -0.0154 17 6 0.8990 -5.0798 -1.2704 18 6 0.2026 -6.4434 -1.2583 19 8 -0.6459 -6.5282 -0.1103 20 6 0.0446 -6.3616 1.1312 21 6 0.7445 -5.0002 1.1425 22 6 1.0357 -7.4735 1.3443 23 6 0.6563 -8.7544 0.5768 24 6 -0.8508 -9.0668 0.6444 25 6 -1.4266 -8.8365 2.0154 26 6 -2.0119 -7.4103 2.0690 27 6 -0.9868 -6.3985 2.2774 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 3.0065 -3.5735 -0.9001 37 1 3.0065 -3.5813 0.8798 38 1 0.1528 -4.2906 -1.3617 39 1 1.5877 -5.0292 -2.1137 40 1 -0.3959 -6.5547 -2.1624 41 1 0.9514 -7.2344 -1.2167 42 1 1.3211 -4.8951 2.0615 43 1 -0.0013 -4.2072 1.0877 44 1 2.0179 -7.1396 1.0098 45 1 1.0864 -7.7019 2.4088 46 1 1.2086 -9.5939 0.9991 47 1 0.9441 -8.6348 -0.4677 48 1 -1.0077 -10.1092 0.3668 49 1 -1.3750 -8.4313 -0.0694 50 1 -0.6409 -8.9381 2.7641 51 1 -2.2156 -9.5634 2.2080 52 1 -2.7334 -7.3551 2.8841 53 1 -2.5247 -7.2050 1.1294 54 1 -0.4679 -6.6091 3.2125 55 1 -1.4650 -5.4219 2.3534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092801656.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:12 Heat of formation + Delta-G solvation = -98.063981 kcal Electronic energy + Delta-G solvation = -31511.694071 eV Core-core repulsion = 27547.624012 eV Total energy + Delta-G solvation = -3964.070059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82952 -40.69800 -38.41464 -36.71809 -36.38720 -34.76575 -33.79711 -33.01733 -32.11418 -30.06749 -29.28049 -27.56558 -27.07593 -25.49164 -25.10390 -24.75619 -23.61101 -21.45879 -20.97249 -20.20427 -19.70585 -18.73954 -18.15201 -17.37315 -17.18542 -16.91939 -16.51817 -16.42965 -16.24482 -16.08644 -15.71412 -15.31232 -15.09350 -14.83613 -14.56160 -14.19209 -14.14765 -14.01144 -13.78733 -13.75322 -13.51959 -13.48400 -13.34143 -13.07012 -12.98116 -12.87571 -12.80793 -12.54470 -12.43842 -12.24418 -12.09667 -12.03983 -11.76250 -11.69884 -11.42895 -11.38705 -11.28333 -11.04265 -10.80374 -10.68033 -10.65647 -10.17397 -9.46500 -9.32425 -8.25580 -6.40706 1.34162 1.36654 1.48374 1.78282 2.27728 2.41366 2.77793 2.95066 3.03869 3.71079 3.75418 3.81396 3.83931 3.90416 3.97475 4.12050 4.18436 4.22831 4.26228 4.27500 4.33195 4.43420 4.49967 4.56166 4.58278 4.64003 4.64513 4.67056 4.80302 4.80605 4.86860 4.89117 4.93006 4.99615 5.06479 5.10507 5.12821 5.13761 5.19123 5.21109 5.37782 5.38757 5.48293 5.48998 5.52285 5.53852 5.59146 5.79367 5.79976 5.92099 6.00553 6.02531 6.41129 6.65855 6.74657 7.24790 7.43917 8.81818 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002265 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.548413 B =12356.833488 C =12630.216272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.497 3.503 13 O -0.596 6.596 14 C -0.155 4.155 15 C 0.082 3.918 16 N -0.527 5.527 17 C 0.009 3.991 18 C 0.057 3.943 19 O -0.369 6.369 20 C 0.132 3.868 21 C 0.023 3.977 22 C -0.134 4.134 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.110 4.110 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.023 0.977 32 H -0.002 1.002 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.063 0.937 52 H 0.063 0.937 53 H 0.060 0.940 54 H 0.078 0.922 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 -26.683 3.935 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.286 3.714 13 O -0.478 6.478 14 C -0.196 4.196 15 C -0.047 4.047 16 N -0.250 5.250 17 C -0.119 4.119 18 C -0.019 4.019 19 O -0.288 6.288 20 C 0.093 3.907 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.145 4.145 24 C -0.157 4.157 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.016 0.984 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.081 0.919 53 H 0.079 0.921 54 H 0.097 0.903 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.283 -26.935 4.010 30.299 hybrid contribution 0.399 1.789 -0.777 1.991 sum -12.884 -25.146 3.233 28.439 Atomic orbital electron populations 1.21893 0.78021 1.03795 1.02478 1.48238 1.08355 1.06574 1.71214 1.18764 0.91083 0.80426 0.96100 1.21702 1.36825 1.06563 0.92930 0.92989 1.25895 0.94880 0.96427 1.02117 1.70057 1.38892 1.14843 1.33027 0.85342 0.77931 0.78423 0.78950 1.19125 1.19307 1.20676 1.21248 0.87795 0.86457 0.75881 1.90640 1.16511 1.88170 1.52445 1.22271 1.00469 0.91549 1.05321 1.21793 0.94826 0.84946 1.03154 1.62516 1.27777 1.31723 1.02961 1.22932 0.97344 0.98899 0.92684 1.22864 0.94579 0.95069 0.89399 1.88038 1.34592 1.92543 1.13588 1.21199 0.92034 0.92331 0.85177 1.22932 0.95376 0.97695 0.94451 1.21786 0.99216 0.94765 1.01405 1.21826 0.96486 0.96133 1.00027 1.21406 0.95480 1.00604 0.98209 1.21295 0.99977 0.96331 0.97420 1.20300 0.97915 0.94454 1.02096 1.20553 0.96875 1.00322 0.96340 0.91171 0.91517 0.89270 0.95923 0.98416 0.92342 0.87147 0.87789 0.91424 0.91030 0.93819 0.89674 0.87327 0.91389 0.89698 0.93348 0.91674 0.91077 0.92542 0.92299 0.93110 0.90784 0.92024 0.91810 0.91871 0.92144 0.90334 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.25 127.77 1.31 3.73 16 2 N -0.61 -26.33 2.86 -851.12 -2.43 -28.76 16 3 C 0.26 14.16 5.16 85.63 0.44 14.60 16 4 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.33 5.46 84.66 0.46 0.80 16 7 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 8 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.50 20.70 7.67 87.66 0.67 21.38 16 13 O -0.60 -31.01 15.56 -3.04 -0.05 -31.06 16 14 C -0.15 -4.27 3.54 29.85 0.11 -4.16 16 15 C 0.08 2.21 4.67 86.30 0.40 2.62 16 16 N -0.53 -11.17 4.24 -895.20 -3.80 -14.96 16 17 C 0.01 0.18 5.32 86.32 0.46 0.64 16 18 C 0.06 0.90 6.40 72.02 0.46 1.36 16 19 O -0.37 -6.29 6.13 -148.98 -0.91 -7.20 16 20 C 0.13 2.11 0.62 -11.17 -0.01 2.10 16 21 C 0.02 0.43 3.64 86.31 0.31 0.75 16 22 C -0.13 -2.08 4.20 30.14 0.13 -1.95 16 23 C -0.11 -1.52 5.18 31.32 0.16 -1.36 16 24 C -0.12 -1.62 5.28 30.14 0.16 -1.46 16 25 C -0.11 -1.39 5.61 30.20 0.17 -1.22 16 26 C -0.11 -1.44 5.18 28.74 0.15 -1.29 16 27 C -0.10 -1.42 4.53 28.73 0.13 -1.29 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 30 H 0.09 2.07 6.43 -2.39 -0.02 2.06 16 31 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.00 -0.15 7.42 -2.38 -0.02 -0.16 16 33 H 0.27 15.24 8.31 -92.72 -0.77 14.47 16 34 H 0.11 2.53 6.39 -2.38 -0.02 2.52 16 35 H 0.10 2.54 5.87 -2.39 -0.01 2.53 16 36 H 0.07 2.08 8.06 -2.38 -0.02 2.06 16 37 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 38 H 0.04 0.83 6.60 -2.39 -0.02 0.82 16 39 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.06 5.01 -2.39 -0.01 1.05 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 0.90 6.25 -2.39 -0.01 0.88 16 44 H 0.06 1.21 7.23 -2.38 -0.02 1.19 16 45 H 0.07 1.01 6.63 -2.39 -0.02 0.99 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.87 5.57 -2.39 -0.01 0.85 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.07 1.17 5.32 -2.39 -0.01 1.15 16 50 H 0.06 0.75 6.98 -2.38 -0.02 0.73 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.06 0.94 6.71 -2.39 -0.02 0.93 16 54 H 0.08 0.95 7.47 -2.39 -0.02 0.93 16 55 H 0.06 0.89 7.82 -2.39 -0.02 0.87 16 Total: -1.00 -72.52 396.29 1.74 -70.78 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.86 Total: 16.52 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.76 Total: 3.82 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -5.95 Total: -100.14 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.96 Total: -38.26 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.52 1.74 -70.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092801656.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.286 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds