Wall clock time and date at job start Tue Mar 31 2020 22:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99892 * 2 1 4 4 C 1.52992 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47053 * 184.11626 * 4 3 2 6 6 C 1.50703 * 110.43518 * 57.61892 * 5 4 3 7 7 O 1.21275 * 119.99945 * 242.07816 * 6 5 4 8 8 N 1.34771 * 119.99542 * 62.08026 * 6 5 4 9 9 C 1.46506 * 119.99668 * 185.36470 * 8 6 5 10 10 C 1.52996 * 109.47302 * 179.97438 * 9 8 6 11 11 C 1.53082 * 109.44939 * 64.78800 * 10 9 8 12 12 C 1.53194 * 109.29243 * 181.24140 * 11 10 9 13 13 N 1.46925 * 108.89776 * 305.58055 * 12 11 10 14 14 C 1.36934 * 120.63335 * 233.51641 * 13 12 11 15 15 H 1.07998 * 120.00206 * 147.94504 * 14 13 12 16 16 C 1.38815 * 119.99751 * 327.94881 * 14 13 12 17 17 N 1.31620 * 119.99876 * 167.30610 * 16 14 13 18 18 Si 1.86799 * 120.00008 * 347.30395 * 16 14 13 19 19 H 1.48501 * 109.47199 * 86.21194 * 18 16 14 20 20 H 1.48500 * 109.46922 * 206.20999 * 18 16 14 21 21 H 1.48504 * 109.47087 * 326.20961 * 18 16 14 22 22 C 1.46930 * 118.73708 * 53.53536 * 13 12 11 23 23 C 1.53037 * 109.46364 * 185.00156 * 10 9 8 24 24 C 1.54888 * 110.59947 * 180.23833 * 5 4 3 25 25 C 1.54890 * 102.74933 * 156.67305 * 24 5 4 26 26 C 1.54269 * 104.19580 * 322.05809 * 25 24 5 27 27 C 1.53872 * 106.59658 * 23.60929 * 26 25 24 28 28 H 1.08999 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46906 * 299.99609 * 1 2 3 30 30 H 1.09004 * 109.47320 * 60.00302 * 1 2 3 31 31 H 1.09008 * 109.47278 * 59.99759 * 3 2 1 32 32 H 1.08998 * 109.47354 * 300.00195 * 3 2 1 33 33 H 1.09000 * 109.47053 * 64.11766 * 4 3 2 34 34 H 1.08992 * 109.47321 * 304.11377 * 4 3 2 35 35 H 0.97000 * 120.00404 * 5.35826 * 8 6 5 36 36 H 1.09005 * 109.47146 * 59.99883 * 9 8 6 37 37 H 1.08995 * 109.46906 * 300.00075 * 9 8 6 38 38 H 1.08999 * 109.46260 * 304.97319 * 10 9 8 39 39 H 1.09000 * 109.38938 * 61.37130 * 11 10 9 40 40 H 1.09001 * 109.62416 * 301.26081 * 11 10 9 41 41 H 1.08998 * 109.58529 * 185.71853 * 12 11 10 42 42 H 1.09004 * 109.58596 * 65.44189 * 12 11 10 43 43 H 0.97001 * 119.99804 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.58701 * 66.18011 * 22 13 12 45 45 H 1.08997 * 109.58609 * 186.46594 * 22 13 12 46 46 H 1.08995 * 109.49789 * 58.66256 * 23 10 9 47 47 H 1.09006 * 109.49249 * 298.56917 * 23 10 9 48 48 H 1.08992 * 110.75641 * 274.99065 * 24 5 4 49 49 H 1.09008 * 110.75759 * 38.35928 * 24 5 4 50 50 H 1.09004 * 110.48915 * 203.38045 * 25 24 5 51 51 H 1.09000 * 110.48285 * 80.73729 * 25 24 5 52 52 H 1.08994 * 110.02930 * 264.32314 * 26 25 24 53 53 H 1.08999 * 110.02658 * 142.89505 * 26 25 24 54 54 H 1.09004 * 110.03221 * 240.71030 * 27 26 25 55 55 H 1.09003 * 110.03077 * 119.28357 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5788 0.1042 6 6 3.6730 3.2800 1.3471 7 8 3.0374 4.3087 1.2543 8 7 3.9464 2.7640 2.5617 9 6 3.3775 3.3789 3.7637 10 6 3.8401 2.6053 5.0000 11 6 5.3575 2.7421 5.1486 12 6 5.8208 1.9410 6.3695 13 7 5.0547 2.3785 7.5444 14 6 5.6962 2.7858 8.6835 15 1 5.2547 3.5475 9.3090 16 6 6.9142 2.2197 9.0343 17 7 7.6498 2.7718 9.9758 18 14 7.5092 0.6741 8.1701 19 1 8.2318 1.0485 6.9280 20 1 8.4245 -0.0742 9.0688 21 1 6.3444 -0.1806 7.8268 22 6 3.5871 2.3703 7.4739 23 6 3.1481 3.1694 6.2429 24 6 5.7035 2.4873 0.1010 25 6 6.1280 3.8919 -0.3949 26 6 5.0781 4.2476 -1.4678 27 6 3.8252 3.4127 -1.1504 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8625 0.7086 -0.9237 34 1 3.8518 0.5816 0.8516 35 1 4.5196 1.9854 2.6401 36 1 2.2894 3.3525 3.7051 37 1 3.7125 4.4136 3.8357 38 1 3.5820 1.5523 4.8871 39 1 5.6146 3.7927 5.2840 40 1 5.8490 2.3591 4.2543 41 1 6.8830 2.1161 6.5398 42 1 5.6489 0.8786 6.1960 43 1 8.5007 2.3760 10.2211 44 1 3.2311 1.3436 7.3891 45 1 3.1756 2.8266 8.3742 46 1 2.0674 3.0910 6.1247 47 1 3.4256 4.2158 6.3704 48 1 6.0816 2.3020 1.1063 49 1 6.0434 1.7150 -0.5891 50 1 7.1251 3.8563 -0.8340 51 1 6.0960 4.6112 0.4235 52 1 5.4554 3.9931 -2.4582 53 1 4.8407 5.3103 -1.4199 54 1 3.5943 2.7530 -1.9869 55 1 2.9796 4.0703 -0.9485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130695208.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:17 Heat of formation + Delta-G solvation = -108.137401 kcal Electronic energy + Delta-G solvation = -31317.229840 eV Core-core repulsion = 27352.722965 eV Total energy + Delta-G solvation = -3964.506875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74507 -39.80263 -38.85264 -38.10770 -36.46985 -34.62315 -33.61591 -32.74108 -31.91143 -29.86569 -29.01682 -28.31071 -26.76056 -25.63846 -24.38682 -23.68775 -23.54470 -22.46240 -21.30893 -21.02745 -20.01758 -18.78571 -17.95947 -17.57518 -17.23320 -17.10502 -16.92292 -16.34822 -16.07244 -15.91708 -15.86864 -15.55552 -15.31899 -15.02439 -14.85012 -14.71454 -14.31758 -14.30124 -14.05073 -13.92628 -13.63568 -13.41549 -13.20544 -12.96721 -12.61126 -12.54483 -12.44399 -12.24665 -12.20820 -12.16295 -12.08328 -11.97579 -11.80644 -11.71372 -11.60560 -11.56202 -11.37935 -11.28772 -11.23377 -10.72486 -10.65665 -10.62050 -10.07261 -8.85063 -8.15667 -5.55489 1.29474 1.41421 1.51369 1.62217 2.18235 2.41861 2.70863 3.11476 3.34109 3.43464 3.57675 3.71120 3.77440 3.83662 3.97708 4.03436 4.06853 4.15547 4.31159 4.37750 4.40415 4.42085 4.46423 4.49655 4.51863 4.52393 4.56758 4.64096 4.69995 4.71648 4.77301 4.79264 4.82925 4.84877 4.89595 5.00364 5.02370 5.04351 5.07588 5.09017 5.14282 5.17951 5.19495 5.25596 5.28341 5.30369 5.41820 5.50057 5.58522 5.90663 6.14096 6.15080 6.54353 6.94468 7.23468 7.62568 8.04024 9.04617 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.002903 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.550006 B = 9641.856961 C =10400.193771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.060 3.940 4 C -0.096 4.096 5 C -0.075 4.075 6 C 0.524 3.476 7 O -0.579 6.579 8 N -0.718 5.718 9 C 0.136 3.864 10 C -0.080 4.080 11 C -0.118 4.118 12 C 0.114 3.886 13 N -0.623 5.623 14 C -0.250 4.250 15 H 0.044 0.956 16 C -0.041 4.041 17 N -0.966 5.966 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.315 1.315 21 H -0.258 1.258 22 C 0.144 3.856 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.110 4.110 28 H 0.100 0.900 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.411 0.589 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.261 0.739 44 H 0.038 0.962 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.049 0.951 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.041 0.959 52 H 0.084 0.916 53 H 0.049 0.951 54 H 0.091 0.909 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 -5.560 -28.341 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.017 4.017 4 C -0.134 4.134 5 C -0.079 4.079 6 C 0.312 3.688 7 O -0.459 6.459 8 N -0.370 5.370 9 C 0.012 3.988 10 C -0.098 4.098 11 C -0.157 4.157 12 C -0.011 4.011 13 N -0.349 5.349 14 C -0.380 4.380 15 H 0.062 0.938 16 C -0.235 4.235 17 N -0.613 5.613 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.244 1.244 21 H -0.182 1.182 22 C 0.019 3.981 23 C -0.158 4.158 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.159 4.159 27 C -0.147 4.147 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.125 0.875 50 H 0.104 0.896 51 H 0.060 0.940 52 H 0.103 0.897 53 H 0.068 0.932 54 H 0.109 0.891 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.249 -5.003 -28.294 30.507 hybrid contribution 0.524 -0.078 0.766 0.931 sum -9.725 -5.081 -27.529 29.635 Atomic orbital electron populations 1.22911 0.79816 1.03882 1.00491 1.87814 1.21144 1.28204 1.95521 1.22583 0.94735 0.84380 0.99970 1.21512 0.92317 0.94079 1.05465 1.21622 0.98211 0.95406 0.92628 1.20816 0.78491 0.84109 0.85388 1.90659 1.42468 1.25358 1.87416 1.45993 1.51740 1.33663 1.05566 1.21263 0.97913 0.96470 0.83153 1.21187 0.94856 1.00522 0.93280 1.21956 0.96009 1.00201 0.97572 1.21512 0.95427 0.96642 0.87496 1.44469 1.02164 1.77862 1.10358 1.18848 1.03398 1.15058 1.00702 0.93794 1.26137 0.98135 1.01343 0.97880 1.69929 1.13603 1.42402 1.35322 0.85746 0.77770 0.80428 0.76948 1.19314 1.24381 1.18244 1.21091 0.82260 0.97805 0.96925 1.21867 1.00284 0.99409 0.94196 1.22659 0.90286 0.98522 1.03057 1.22386 0.99811 0.96293 0.98172 1.22103 0.94745 0.99337 0.99687 1.22199 0.98820 0.98218 0.95509 0.88117 0.94203 0.93125 0.95172 0.92537 0.87865 0.89902 0.75245 0.91495 0.93118 0.89372 0.93450 0.89958 0.93355 0.94316 0.92976 0.94372 0.93049 0.89407 0.93216 0.90760 0.87455 0.89647 0.93959 0.89727 0.93166 0.89080 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.57 10.70 -148.98 -1.59 -9.17 16 3 C 0.06 1.03 5.51 71.98 0.40 1.42 16 4 C -0.10 -1.30 4.51 30.59 0.14 -1.16 16 5 C -0.08 -1.18 0.47 -51.85 -0.02 -1.21 16 6 C 0.52 11.87 4.92 87.66 0.43 12.30 16 7 O -0.58 -17.83 15.43 -3.02 -0.05 -17.88 16 8 N -0.72 -14.75 5.04 -463.06 -2.33 -17.08 16 9 C 0.14 3.24 5.07 86.38 0.44 3.68 16 10 C -0.08 -2.04 2.18 -10.76 -0.02 -2.06 16 11 C -0.12 -3.60 5.25 30.69 0.16 -3.44 16 12 C 0.11 4.53 4.15 86.36 0.36 4.89 16 13 N -0.62 -28.76 2.74 -699.09 -1.92 -30.68 16 14 C -0.25 -14.33 10.06 84.03 0.85 -13.48 16 15 H 0.04 2.80 8.06 -2.91 -0.02 2.77 16 16 C -0.04 -2.41 5.34 84.86 0.45 -1.95 16 17 N -0.97 -61.55 13.97 21.65 0.30 -61.25 16 18 Si 0.96 46.26 24.24 68.60 1.66 47.92 16 19 H -0.27 -11.83 6.43 99.48 0.64 -11.19 16 20 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 21 H -0.26 -11.69 6.58 99.48 0.65 -11.03 16 22 C 0.14 5.33 6.52 86.36 0.56 5.90 16 23 C -0.12 -3.44 5.36 30.67 0.16 -3.27 16 24 C -0.11 -1.36 5.77 31.89 0.18 -1.17 16 25 C -0.13 -1.95 6.61 31.67 0.21 -1.74 16 26 C -0.12 -1.80 6.80 31.32 0.21 -1.59 16 27 C -0.11 -1.73 4.90 31.32 0.15 -1.58 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.03 0.63 7.05 -2.38 -0.02 0.61 16 32 H 0.06 0.90 7.55 -2.39 -0.02 0.88 16 33 H 0.10 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 35 H 0.41 6.70 6.91 -92.71 -0.64 6.06 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.98 7.15 -2.39 -0.02 1.97 16 41 H 0.05 2.17 4.41 -2.39 -0.01 2.16 16 42 H 0.04 1.45 6.91 -2.39 -0.02 1.44 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.07 0.94 7.32 -2.39 -0.02 0.92 16 49 H 0.11 0.87 8.06 -2.38 -0.02 0.85 16 50 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.09 1.05 7.78 -2.38 -0.02 1.03 16 55 H 0.06 1.25 6.83 -2.39 -0.02 1.23 16 Total: -1.00 -73.88 411.07 2.07 -71.81 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.09 Total: 19.19 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.91 Total: -2.88 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -3.95 Total: -109.00 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.64 Total: -27.05 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.66 Total: 47.92 kcal Total: -73.88 2.07 -71.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130695208.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.325 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds