Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46966 * 110.99873 * 2 1 4 4 C 1.53052 * 109.36241 * 183.18781 * 3 2 1 5 5 N 1.46958 * 109.36472 * 301.59545 * 4 3 2 6 6 C 1.46896 * 110.99957 * 183.18870 * 5 4 3 7 7 C 1.53001 * 109.47258 * 120.66855 * 6 5 4 8 8 C 1.53008 * 109.51876 * 305.85344 * 7 6 5 9 9 C 1.53118 * 109.52635 * 65.97591 * 7 6 5 10 10 C 1.53036 * 109.28147 * 177.62617 * 9 7 6 11 11 N 1.46850 * 109.52075 * 300.82476 * 10 9 7 12 12 C 1.46904 * 110.99749 * 185.83880 * 11 10 9 13 13 C 1.50695 * 109.46859 * 170.00310 * 12 11 10 14 14 O 1.21292 * 120.00660 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99720 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99835 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00078 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99714 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99985 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47214 * 90.00165 * 20 18 16 22 22 H 1.48500 * 109.47476 * 210.00349 * 20 18 16 23 23 H 1.48507 * 109.47172 * 329.99951 * 20 18 16 24 24 C 1.46850 * 111.19996 * 61.74069 * 11 10 9 25 25 C 1.53034 * 109.52287 * 298.25540 * 24 11 10 26 26 C 1.46966 * 110.87862 * 59.32411 * 5 4 3 27 27 C 1.46958 * 110.99957 * 123.79602 * 2 1 3 28 28 H 1.09000 * 109.47316 * 60.00119 * 1 2 3 29 29 H 1.08999 * 109.47284 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47175 * 300.00554 * 1 2 3 31 31 H 1.08996 * 109.49046 * 63.21984 * 3 2 1 32 32 H 1.08995 * 109.50479 * 303.16342 * 3 2 1 33 33 H 1.09003 * 109.48982 * 181.63082 * 4 3 2 34 34 H 1.08998 * 109.50822 * 61.57236 * 4 3 2 35 35 H 1.08998 * 109.47134 * 0.66412 * 6 5 4 36 36 H 1.09004 * 109.47206 * 240.66675 * 6 5 4 37 37 H 1.08992 * 109.47106 * 199.78213 * 8 7 6 38 38 H 1.09007 * 109.46974 * 319.78156 * 8 7 6 39 39 H 1.09001 * 109.46633 * 79.77617 * 8 7 6 40 40 H 1.08999 * 109.49854 * 57.68188 * 9 7 6 41 41 H 1.09001 * 109.50394 * 297.57352 * 9 7 6 42 42 H 1.09001 * 109.46315 * 180.81001 * 10 9 7 43 43 H 1.09000 * 109.44912 * 60.83075 * 10 9 7 44 44 H 1.09004 * 109.46661 * 289.99856 * 12 11 10 45 45 H 1.08995 * 109.47109 * 49.99767 * 12 11 10 46 46 H 0.96994 * 119.99906 * 359.97438 * 15 13 12 47 47 H 0.97005 * 119.99760 * 179.97438 * 19 18 16 48 48 H 1.09003 * 109.45721 * 58.27049 * 24 11 10 49 49 H 1.09000 * 109.46095 * 178.23770 * 24 11 10 50 50 H 1.08997 * 109.50663 * 299.24050 * 25 24 11 51 51 H 1.08995 * 109.50504 * 179.11312 * 25 24 11 52 52 H 1.08996 * 109.49046 * 60.64523 * 26 5 4 53 53 H 1.08998 * 109.48932 * 180.71441 * 26 5 4 54 54 H 1.08999 * 109.48954 * 296.77699 * 27 2 1 55 55 H 1.09003 * 109.48626 * 56.84449 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5660 1.0598 6 6 5.5190 0.5660 1.0598 7 6 6.0291 1.1878 2.3614 8 6 5.4031 2.5717 2.5465 9 6 5.6457 0.2909 3.5417 10 6 6.2094 0.8872 4.8335 11 7 7.6704 0.9917 4.7291 12 6 8.2590 1.4306 6.0015 13 6 9.7581 1.2916 5.9358 14 8 10.2845 0.8682 4.9285 15 7 10.5140 1.6370 6.9970 16 6 11.8778 1.5100 6.9374 17 1 12.3465 1.1338 6.0402 18 6 12.6571 1.8665 8.0312 19 7 12.0868 2.3249 9.1228 20 14 14.5154 1.6943 7.9499 21 1 15.1071 2.9541 7.4322 22 1 15.0470 1.4197 9.3090 23 1 14.8694 0.5722 7.0439 24 6 8.0619 1.8858 3.6320 25 6 7.5535 1.3193 2.3044 26 6 3.5234 -0.8060 1.0598 27 6 1.9956 -0.7631 1.1401 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6937 1.8775 0.9173 32 1 1.6013 1.9132 -0.8601 33 1 3.9178 2.3449 -0.0512 34 1 3.8257 0.8481 -1.0105 35 1 5.8823 1.1475 0.2125 36 1 5.8824 -0.4586 0.9799 37 1 6.0025 3.1505 3.2492 38 1 5.3702 3.0869 1.5865 39 1 4.3907 2.4633 2.9356 40 1 6.0593 -0.7062 3.3904 41 1 4.5599 0.2279 3.6134 42 1 5.9504 0.2433 5.6740 43 1 5.7847 1.8787 4.9911 44 1 7.9984 2.4736 6.1817 45 1 7.8721 0.8140 6.8127 46 1 10.0931 1.9753 7.8027 47 1 12.6309 2.5734 9.8865 48 1 7.6285 2.8726 3.7955 49 1 9.1483 1.9673 3.5999 50 1 7.9972 0.3384 2.1336 51 1 7.8306 1.9911 1.4921 52 1 3.8253 -1.3115 0.1426 53 1 3.9177 -1.3469 1.9201 54 1 1.6937 -0.2819 2.0704 55 1 1.6012 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330834344.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = -40.882960 kcal Electronic energy + Delta-G solvation = -30766.482368 eV Core-core repulsion = 26837.184615 eV Total energy + Delta-G solvation = -3929.297753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15445 -40.22825 -39.37436 -36.90815 -35.89992 -34.76595 -33.24926 -31.97074 -31.64306 -30.40669 -29.07954 -27.78094 -26.74765 -25.53496 -24.60133 -24.17496 -23.78940 -22.19598 -21.00047 -20.69927 -19.85852 -19.15360 -17.71130 -17.04555 -16.83216 -16.58614 -16.29614 -16.22670 -15.94508 -15.86165 -15.78963 -15.51026 -15.32955 -15.13473 -14.97995 -14.74563 -14.20261 -14.07213 -13.79991 -13.48046 -13.43062 -13.11741 -13.08093 -12.95029 -12.81321 -12.76451 -12.49657 -12.41987 -12.35192 -12.21605 -12.18395 -12.11811 -11.97009 -11.92060 -11.69009 -11.49346 -11.38134 -11.03758 -10.99747 -10.19547 -9.97835 -9.36176 -9.16421 -9.04697 -8.45172 -5.93662 1.38146 1.41456 1.54432 2.07442 2.29384 2.84047 2.90059 3.02506 3.21537 3.42777 3.83721 3.87887 3.94462 4.04105 4.12818 4.17718 4.29509 4.32206 4.35897 4.36627 4.43616 4.46874 4.53266 4.56723 4.58379 4.62849 4.65085 4.67316 4.71063 4.78202 4.85249 4.88269 4.88971 4.94711 4.97055 5.02099 5.03987 5.10332 5.13662 5.22446 5.23358 5.34545 5.39170 5.42201 5.47978 5.64679 5.94683 6.01123 6.03132 6.17076 6.22983 6.23033 6.36070 6.62865 7.14707 7.58527 8.14774 8.72315 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.037052 B = 0.001916 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.516943 B =14613.071884 C =14796.556812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.060 3.940 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.072 3.928 7 C -0.043 4.043 8 C -0.120 4.120 9 C -0.086 4.086 10 C 0.055 3.945 11 N -0.532 5.532 12 C 0.058 3.942 13 C 0.442 3.558 14 O -0.612 6.612 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.058 3.942 25 C -0.096 4.096 26 C 0.059 3.941 27 C 0.060 3.940 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.033 0.967 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.070 0.930 52 H 0.033 0.967 53 H 0.082 0.918 54 H 0.037 0.963 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.677 -1.411 -15.526 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.068 4.068 4 C -0.069 4.069 5 N -0.259 5.259 6 C -0.055 4.055 7 C -0.044 4.044 8 C -0.177 4.177 9 C -0.124 4.124 10 C -0.072 4.072 11 N -0.257 5.257 12 C -0.074 4.074 13 C 0.230 3.770 14 O -0.498 6.498 15 N -0.214 5.214 16 C -0.461 4.461 17 H 0.096 0.904 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.070 4.070 25 C -0.134 4.134 26 C -0.069 4.069 27 C -0.068 4.068 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.051 0.949 53 H 0.101 0.899 54 H 0.055 0.945 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.091 -2.104 -16.129 29.067 hybrid contribution 0.762 0.900 0.891 1.478 sum -23.329 -1.203 -15.238 27.890 Atomic orbital electron populations 1.22363 0.86219 1.02590 1.00974 1.62194 1.08817 1.14253 1.43108 1.22148 0.94353 0.89179 1.01094 1.22258 0.94497 0.98654 0.91445 1.62035 1.07266 1.13771 1.42793 1.22093 0.86908 0.99975 0.96572 1.20485 0.92725 0.96185 0.95005 1.21707 1.00286 0.94864 1.00885 1.21500 1.00435 0.98016 0.92442 1.22215 0.85408 1.00027 0.99546 1.61506 1.10079 1.51341 1.02816 1.21705 0.91039 1.00554 0.94060 1.20781 0.89985 0.82460 0.83800 1.90457 1.75230 1.51216 1.32918 1.41947 1.06555 1.57971 1.14885 1.19649 0.82788 1.42471 1.01147 0.90367 1.26034 1.04858 0.96191 0.94302 1.69679 1.38126 1.43952 1.04500 0.84929 0.76895 0.78694 0.77809 1.19654 1.19528 1.19852 1.22127 1.00314 0.93024 0.91528 1.21508 0.95561 1.00844 0.95517 1.22255 0.94512 0.89378 1.00794 1.22146 0.94293 0.98739 0.91592 0.90712 0.90796 0.95625 0.94550 0.89503 0.89722 0.94811 0.92040 0.92981 0.94350 0.92859 0.91924 0.92899 0.89697 0.90493 0.94332 0.92068 0.87501 0.77118 0.91368 0.94925 0.92622 0.92916 0.91152 0.94878 0.89923 0.94489 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.60 127.69 1.23 1.51 16 2 N -0.56 -7.92 4.97 -921.93 -4.58 -12.50 16 3 C 0.06 0.81 5.62 86.31 0.49 1.30 16 4 C 0.06 0.86 5.28 86.31 0.46 1.32 16 5 N -0.53 -8.57 3.51 -895.69 -3.14 -11.71 16 6 C 0.07 1.31 4.26 86.30 0.37 1.67 16 7 C -0.04 -0.90 0.60 -52.10 -0.03 -0.94 16 8 C -0.12 -2.37 7.35 71.98 0.53 -1.84 16 9 C -0.09 -1.89 4.59 30.65 0.14 -1.75 16 10 C 0.06 1.41 5.23 86.32 0.45 1.86 16 11 N -0.53 -18.04 4.40 -900.91 -3.96 -22.01 16 12 C 0.06 2.11 5.45 85.55 0.47 2.58 16 13 C 0.44 21.72 7.46 87.66 0.65 22.38 16 14 O -0.61 -34.54 13.90 -3.07 -0.04 -34.58 16 15 N -0.58 -30.32 5.29 -306.99 -1.62 -31.94 16 16 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 20 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 C 0.06 1.94 4.87 86.32 0.42 2.36 16 25 C -0.10 -2.60 4.89 30.65 0.15 -2.45 16 26 C 0.06 0.90 5.28 86.31 0.46 1.36 16 27 C 0.06 0.84 5.62 86.31 0.49 1.33 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 30 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.14 7.81 -2.39 -0.02 1.12 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 1.07 7.54 -2.39 -0.02 1.05 16 36 H 0.05 1.00 7.55 -2.38 -0.02 0.98 16 37 H 0.04 0.86 5.25 -2.39 -0.01 0.84 16 38 H 0.05 0.95 7.65 -2.38 -0.02 0.94 16 39 H 0.06 1.20 7.93 -2.39 -0.02 1.18 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 42 H 0.08 1.83 8.02 -2.39 -0.02 1.81 16 43 H 0.04 0.93 7.00 -2.39 -0.02 0.91 16 44 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.11 3.47 7.99 -2.39 -0.02 3.45 16 46 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 47 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 48 H 0.03 1.03 6.16 -2.39 -0.01 1.01 16 49 H 0.06 2.38 5.78 -2.39 -0.01 2.37 16 50 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 54 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 55 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 Total: -1.00 -66.55 410.96 -3.38 -69.94 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.12 Total: 35.30 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 7.54 Total: 12.05 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -13.02 Total: -128.35 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.04 Total: -34.58 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.55 -3.38 -69.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330834344.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.054 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds