Wall clock time and date at job start Tue Mar 31 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00129 * 2 1 4 4 H 1.08999 * 109.47081 * 329.99530 * 3 2 1 5 5 C 1.53000 * 109.47342 * 89.99752 * 3 2 1 6 6 C 1.52995 * 109.46962 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47480 * 300.00050 * 6 5 3 8 8 C 1.52999 * 109.46696 * 59.99980 * 7 6 5 9 9 H 1.09003 * 109.46943 * 60.00641 * 8 7 6 10 10 C 1.53003 * 109.46696 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.47127 * 294.99921 * 10 8 7 12 12 O 1.21278 * 120.00300 * 0.02562 * 11 10 8 13 13 N 1.34784 * 120.00272 * 179.97438 * 11 10 8 14 14 C 1.46495 * 120.00167 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46664 * 180.02562 * 14 13 11 16 16 C 1.53039 * 109.46180 * 295.06593 * 15 14 13 17 17 C 1.53191 * 109.31147 * 178.61923 * 16 15 14 18 18 N 1.46927 * 108.77847 * 54.63349 * 17 16 15 19 19 C 1.36933 * 120.62744 * 126.36718 * 18 17 16 20 20 H 1.08000 * 120.00228 * 207.69771 * 19 18 17 21 21 C 1.38810 * 120.00005 * 27.70470 * 19 18 17 22 22 N 1.31612 * 120.00388 * 17.34408 * 21 19 18 23 23 Si 1.86803 * 119.99661 * 197.34857 * 21 19 18 24 24 H 1.48500 * 109.47095 * 89.99929 * 23 21 19 25 25 H 1.48507 * 109.47152 * 209.99751 * 23 21 19 26 26 H 1.48497 * 109.47362 * 329.99784 * 23 21 19 27 27 C 1.46919 * 118.73703 * 306.39272 * 18 17 16 28 28 C 1.53050 * 109.45734 * 174.99710 * 15 14 13 29 29 C 1.52990 * 109.47301 * 299.99887 * 8 7 6 30 30 H 1.08997 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47046 * 300.00237 * 1 2 3 32 32 H 1.08995 * 109.46831 * 60.00208 * 1 2 3 33 33 H 1.09000 * 109.47012 * 300.00538 * 5 3 2 34 34 H 1.09006 * 109.46631 * 60.00121 * 5 3 2 35 35 H 1.08998 * 109.47268 * 60.00932 * 6 5 3 36 36 H 1.09003 * 109.46958 * 179.97438 * 6 5 3 37 37 H 1.08996 * 109.46867 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.46879 * 300.00084 * 7 6 5 39 39 H 1.09002 * 109.47276 * 54.99934 * 10 8 7 40 40 H 1.09003 * 109.47058 * 175.00501 * 10 8 7 41 41 H 0.97000 * 119.99616 * 0.02562 * 13 11 10 42 42 H 1.08999 * 109.47145 * 299.99581 * 14 13 11 43 43 H 1.08994 * 109.47581 * 60.00417 * 14 13 11 44 44 H 1.08993 * 109.46123 * 55.03017 * 15 14 13 45 45 H 1.09005 * 109.49587 * 298.56703 * 16 15 14 46 46 H 1.08995 * 109.49602 * 58.66752 * 16 15 14 47 47 H 1.08999 * 109.58632 * 294.84606 * 17 16 15 48 48 H 1.08999 * 109.58372 * 174.42491 * 17 16 15 49 49 H 0.97002 * 120.00205 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.59153 * 293.81721 * 27 18 17 51 51 H 1.09002 * 109.70288 * 173.46475 * 27 18 17 52 52 H 1.09002 * 109.49704 * 301.34036 * 28 15 14 53 53 H 1.08997 * 109.49420 * 61.43642 * 28 15 14 54 54 H 1.09003 * 109.47737 * 300.00268 * 29 8 7 55 55 H 1.09002 * 109.47382 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8406 3.1688 1.4424 7 6 4.1894 3.1260 0.7213 8 6 3.9819 2.6600 -0.7211 9 1 3.3170 3.3542 -1.2351 10 6 5.3308 2.6166 -1.4420 11 6 5.8877 4.0127 -1.5502 12 8 5.2671 4.9501 -1.0952 13 7 7.0759 4.2196 -2.1518 14 6 7.6175 5.5767 -2.2565 15 6 8.9663 5.5332 -2.9775 16 6 9.9746 4.7577 -2.1265 17 6 11.3138 4.6867 -2.8670 18 7 11.7372 6.0510 -3.2106 19 6 12.9756 6.5092 -2.8480 20 1 13.1342 7.5649 -2.6844 21 6 14.0272 5.6169 -2.6908 22 7 13.9473 4.4082 -3.2054 23 14 15.5560 6.1318 -1.7488 24 1 15.3865 5.8004 -0.3112 25 1 16.7362 5.4092 -2.2876 26 1 15.7605 7.5949 -1.8987 27 6 10.8065 6.9143 -3.9502 28 6 9.4730 6.9605 -3.1977 29 6 3.3591 1.2626 -0.7211 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2569 1.8014 1.9563 34 1 2.8830 1.0774 1.9563 35 1 2.1757 3.8630 0.9285 36 1 2.9880 3.5010 2.4701 37 1 4.6333 4.1215 0.7217 38 1 4.8543 2.4319 1.2354 39 1 6.0238 1.9916 -0.8787 40 1 5.1959 2.2009 -2.4406 41 1 7.5724 3.4698 -2.5154 42 1 6.9248 6.2019 -2.8199 43 1 7.7522 5.9923 -1.2580 44 1 8.8473 5.0376 -3.9409 45 1 10.1129 5.2666 -1.1725 46 1 9.6021 3.7486 -1.9506 47 1 11.1969 4.0999 -3.7781 48 1 12.0622 4.2226 -2.2246 49 1 14.6820 3.7846 -3.0952 50 1 10.6482 6.5093 -4.9497 51 1 11.2190 7.9205 -4.0248 52 1 8.7434 7.5191 -3.7841 53 1 9.6160 7.4485 -2.2336 54 1 4.0239 0.5684 -0.2071 55 1 3.2117 0.9304 -1.7487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331073242.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:10 Heat of formation + Delta-G solvation = -117.496822 kcal Electronic energy + Delta-G solvation = -29842.379273 eV Core-core repulsion = 25877.466542 eV Total energy + Delta-G solvation = -3964.912730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.14394 -40.02840 -39.28058 -37.49738 -36.29521 -34.49643 -33.44275 -32.33869 -31.50636 -31.05814 -29.06970 -27.57149 -27.28549 -25.56383 -23.85264 -23.35524 -22.97521 -22.27273 -21.27230 -20.78475 -20.55138 -18.72245 -17.91574 -17.49522 -16.84282 -16.80912 -16.54073 -16.46475 -16.02819 -15.81350 -15.55056 -15.30538 -15.28935 -14.86754 -14.64569 -14.59593 -14.20329 -14.06442 -13.84527 -13.74645 -13.49407 -13.17635 -13.07773 -12.98032 -12.80777 -12.70142 -12.57471 -12.41643 -12.27356 -11.95894 -11.93500 -11.92568 -11.83152 -11.60186 -11.52839 -11.36447 -11.29404 -11.19340 -11.11024 -10.60931 -10.52334 -10.37082 -9.96928 -8.66629 -7.86990 -5.31208 1.46118 1.47814 1.56117 1.74625 2.28588 2.51399 2.83714 3.27038 3.66546 3.72363 3.75727 3.84520 3.90383 3.98490 4.08188 4.11146 4.12440 4.24008 4.32601 4.50149 4.51697 4.53041 4.54244 4.55309 4.57196 4.66875 4.70642 4.71497 4.74965 4.77093 4.84045 4.86079 4.88496 4.94150 5.05093 5.06000 5.07894 5.18964 5.23323 5.26212 5.27085 5.31174 5.33945 5.42700 5.44045 5.53658 5.54789 5.60314 5.67904 5.80914 6.30424 6.40408 6.64983 7.16719 7.35122 7.89030 8.39223 9.18891 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.001781 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.083557 B =15715.399349 C =16042.330971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.088 3.912 4 H 0.063 0.937 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.060 4.060 9 H 0.066 0.934 10 C -0.133 4.133 11 C 0.508 3.492 12 O -0.579 6.579 13 N -0.722 5.722 14 C 0.137 3.863 15 C -0.079 4.079 16 C -0.120 4.120 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.263 4.263 20 H 0.063 0.937 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.140 3.860 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.412 0.588 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.000 1.000 48 H 0.050 0.950 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.051 0.949 52 H 0.083 0.917 53 H 0.053 0.947 54 H 0.073 0.927 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.642 -7.833 5.089 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.030 3.970 4 H 0.081 0.919 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.159 4.159 8 C -0.079 4.079 9 H 0.085 0.915 10 C -0.172 4.172 11 C 0.296 3.704 12 O -0.459 6.459 13 N -0.374 5.374 14 C 0.013 3.987 15 C -0.097 4.097 16 C -0.159 4.159 17 C 0.049 3.951 18 N -0.336 5.336 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.015 3.985 28 C -0.155 4.155 29 C -0.143 4.143 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.248 0.752 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.018 0.982 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.071 0.929 54 H 0.092 0.908 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.838 -7.426 5.393 28.364 hybrid contribution 1.324 0.155 0.234 1.353 sum -25.515 -7.271 5.627 27.121 Atomic orbital electron populations 1.22939 0.80008 1.03628 1.00568 1.87872 1.20996 1.28557 1.95210 1.22169 0.95078 0.84011 0.95693 0.91931 1.21992 1.01319 0.96978 0.96994 1.21419 0.96531 0.96268 1.00710 1.21707 0.97479 1.01754 0.94998 1.20746 0.95092 0.96134 0.95963 0.91524 1.21775 0.98115 0.92668 1.04654 1.21227 0.80406 0.92327 0.76418 1.90650 1.60249 1.46046 1.49003 1.46085 1.21420 1.10290 1.59578 1.21229 0.93752 0.83829 0.99888 1.21160 0.92665 0.97042 0.98879 1.22031 0.95948 0.99640 0.98241 1.20616 0.93359 0.85391 0.95700 1.44333 1.13247 1.12141 1.63850 1.19514 0.87011 0.93213 1.39582 0.91894 1.25730 1.00154 0.97224 1.01406 1.70169 1.33024 1.07706 1.47018 0.85323 0.79171 0.77902 0.78404 1.21348 1.22089 1.19489 1.21044 0.90197 0.94177 0.93077 1.21859 0.97077 0.95839 1.00729 1.21583 0.95071 0.96412 1.01263 0.88637 0.93535 0.93370 0.91540 0.91555 0.92264 0.91508 0.92119 0.91999 0.87036 0.86402 0.75161 0.91633 0.93091 0.90494 0.93879 0.90934 0.98152 0.93133 0.94128 0.96528 0.93061 0.89888 0.92867 0.90808 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.41 -6.85 10.35 -148.98 -1.54 -8.39 16 3 C 0.09 1.32 2.61 30.60 0.08 1.40 16 4 H 0.06 0.89 7.79 -2.39 -0.02 0.87 16 5 C -0.14 -1.98 5.54 30.59 0.17 -1.81 16 6 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 7 C -0.12 -2.25 4.94 30.59 0.15 -2.10 16 8 C -0.06 -0.97 1.84 -10.80 -0.02 -0.99 16 9 H 0.07 1.26 7.96 -2.39 -0.02 1.24 16 10 C -0.13 -1.94 5.17 29.85 0.15 -1.79 16 11 C 0.51 11.33 7.55 87.65 0.66 11.99 16 12 O -0.58 -17.32 13.97 -3.02 -0.04 -17.36 16 13 N -0.72 -15.36 5.27 -463.07 -2.44 -17.81 16 14 C 0.14 3.48 5.07 86.38 0.44 3.91 16 15 C -0.08 -2.25 2.19 -10.76 -0.02 -2.28 16 16 C -0.12 -4.11 5.25 30.67 0.16 -3.95 16 17 C 0.17 8.11 5.31 86.36 0.46 8.57 16 18 N -0.61 -30.27 2.99 -699.13 -2.09 -32.37 16 19 C -0.26 -14.48 9.59 84.03 0.81 -13.67 16 20 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 21 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 22 N -0.93 -54.71 11.19 21.65 0.24 -54.47 16 23 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.14 5.64 6.51 86.36 0.56 6.20 16 28 C -0.12 -3.63 5.36 30.67 0.16 -3.46 16 29 C -0.11 -1.48 4.85 30.59 0.15 -1.34 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.44 7.87 -2.39 -0.02 0.42 16 32 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 33 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.47 5.95 -2.39 -0.01 1.45 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.41 7.08 7.65 -92.71 -0.71 6.37 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.07 2.09 7.15 -2.39 -0.02 2.07 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.05 2.70 6.04 -2.39 -0.01 2.69 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.05 2.05 7.94 -2.39 -0.02 2.03 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 54 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 55 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -68.36 417.00 2.02 -66.34 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.13 Total: 18.89 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.74 Total: -1.78 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.29 Total: -104.64 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.58 Total: -25.76 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.36 2.02 -66.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073242.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.153 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds