Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00455 * 2 1 4 4 H 1.08999 * 109.47099 * 329.99845 * 3 2 1 5 5 C 1.52998 * 109.47287 * 90.00042 * 3 2 1 6 6 C 1.52996 * 109.47138 * 59.99844 * 5 3 2 7 7 C 1.53007 * 109.46908 * 60.00063 * 6 5 3 8 8 C 1.52998 * 109.47170 * 299.99917 * 7 6 5 9 9 H 1.09001 * 109.47022 * 299.99772 * 8 7 6 10 10 C 1.52996 * 109.46959 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47339 * 65.00194 * 10 8 7 12 12 O 1.21286 * 119.99562 * 359.97438 * 11 10 8 13 13 N 1.34766 * 120.00455 * 179.97438 * 11 10 8 14 14 C 1.46504 * 120.00452 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47335 * 180.02562 * 14 13 11 16 16 C 1.53041 * 109.45915 * 295.02373 * 15 14 13 17 17 C 1.53199 * 109.31108 * 178.60189 * 16 15 14 18 18 N 1.46927 * 108.76260 * 54.65962 * 17 16 15 19 19 C 1.36934 * 120.62992 * 126.36566 * 18 17 16 20 20 H 1.07998 * 119.99917 * 331.84939 * 19 18 17 21 21 C 1.38813 * 120.00220 * 151.85628 * 19 18 17 22 22 N 1.31618 * 119.99798 * 343.06878 * 21 19 18 23 23 Si 1.86797 * 120.00047 * 163.06056 * 21 19 18 24 24 H 1.48503 * 109.46707 * 90.00205 * 23 21 19 25 25 H 1.48504 * 109.47100 * 210.00238 * 23 21 19 26 26 H 1.48495 * 109.47322 * 330.00267 * 23 21 19 27 27 C 1.46927 * 118.73531 * 306.37702 * 18 17 16 28 28 C 1.53041 * 109.46059 * 174.97008 * 15 14 13 29 29 C 1.53000 * 109.47222 * 210.00415 * 3 2 1 30 30 H 1.09007 * 109.46801 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47613 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46655 * 300.00440 * 1 2 3 33 33 H 1.09003 * 109.46862 * 300.00081 * 5 3 2 34 34 H 1.08991 * 109.47148 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47328 * 300.00631 * 6 5 3 36 36 H 1.08998 * 109.47692 * 180.02562 * 6 5 3 37 37 H 1.08999 * 109.46894 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.46663 * 60.00160 * 7 6 5 39 39 H 1.09006 * 109.47354 * 185.00020 * 10 8 7 40 40 H 1.08995 * 109.47447 * 305.00158 * 10 8 7 41 41 H 0.97007 * 120.00417 * 0.02562 * 13 11 10 42 42 H 1.09006 * 109.46614 * 300.00267 * 14 13 11 43 43 H 1.08995 * 109.47025 * 59.99693 * 14 13 11 44 44 H 1.08998 * 109.46124 * 55.00094 * 15 14 13 45 45 H 1.08997 * 109.50036 * 298.56766 * 16 15 14 46 46 H 1.08999 * 109.49460 * 58.66401 * 16 15 14 47 47 H 1.09000 * 109.59609 * 294.86918 * 17 16 15 48 48 H 1.08996 * 109.69777 * 174.50968 * 17 16 15 49 49 H 0.97000 * 119.99646 * 180.02562 * 22 21 19 50 50 H 1.08990 * 109.58921 * 293.82292 * 27 18 17 51 51 H 1.09001 * 109.69682 * 173.46654 * 27 18 17 52 52 H 1.09001 * 109.49629 * 301.33773 * 28 15 14 53 53 H 1.09000 * 109.49412 * 61.39885 * 28 15 14 54 54 H 1.09002 * 109.47220 * 180.02562 * 29 3 2 55 55 H 1.08997 * 109.47507 * 59.99833 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.1515 0.7973 2.1637 7 6 4.5002 0.7549 1.4424 8 6 4.2927 0.2890 -0.0001 9 1 3.8493 -0.7067 0.0000 10 6 5.6413 0.2473 -0.7215 11 6 6.5186 -0.8006 -0.0864 12 8 6.1059 -1.4498 0.8513 13 7 7.7616 -1.0163 -0.5603 14 6 8.6143 -2.0354 0.0567 15 6 9.9629 -2.0770 -0.6646 16 6 9.7550 -2.5418 -2.1078 17 6 11.1024 -2.5488 -2.8369 18 7 12.0505 -3.3683 -2.0699 19 6 12.7281 -4.3962 -2.6694 20 1 12.2924 -4.9108 -3.5129 21 6 13.9751 -4.7768 -2.1927 22 7 14.6535 -3.9688 -1.4058 23 14 14.6901 -6.4357 -2.6680 24 1 15.4854 -6.2933 -3.9140 25 1 15.5664 -6.9285 -1.5750 26 1 13.5871 -7.4042 -2.8928 27 6 12.2574 -3.0640 -0.6475 28 6 10.8972 -3.0510 0.0570 29 6 3.3589 1.2631 -0.7213 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.2569 1.8015 1.9563 34 1 2.6608 2.7672 1.4424 35 1 2.7081 -0.1985 2.1637 36 1 3.2990 1.1288 3.1915 37 1 5.1655 0.0613 1.9565 38 1 4.9436 1.7507 1.4424 39 1 5.4841 0.0016 -1.7718 40 1 6.1247 1.2211 -0.6446 41 1 8.0918 -0.4968 -1.3100 42 1 8.7718 -1.7899 1.1071 43 1 8.1305 -3.0091 -0.0202 44 1 10.4059 -1.0811 -0.6640 45 1 9.3352 -3.5477 -2.1092 46 1 9.0710 -1.8609 -2.6143 47 1 11.4807 -1.5296 -2.9156 48 1 10.9782 -2.9706 -3.8342 49 1 15.5250 -4.2346 -1.0731 50 1 12.7300 -2.0870 -0.5478 51 1 12.8945 -3.8257 -0.1978 52 1 11.0262 -2.7325 1.0914 53 1 10.4662 -4.0519 0.0355 54 1 3.8026 2.2588 -0.7209 55 1 3.2111 0.9313 -1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331073243.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = -115.802666 kcal Electronic energy + Delta-G solvation = -29992.307485 eV Core-core repulsion = 26027.468219 eV Total energy + Delta-G solvation = -3964.839266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.13675 -40.07338 -39.27792 -37.14549 -36.27893 -34.45376 -33.35872 -32.46454 -31.40462 -31.12126 -29.06644 -27.60465 -27.24678 -25.56939 -23.85105 -23.43867 -22.95230 -22.28886 -21.23032 -20.60772 -20.46156 -18.71281 -17.92643 -17.22110 -16.85762 -16.81806 -16.57222 -16.38334 -16.14676 -15.78220 -15.68106 -15.30845 -15.15369 -14.82342 -14.63005 -14.42488 -14.29019 -14.01392 -13.79204 -13.48150 -13.41241 -13.27995 -13.00181 -12.97491 -12.80194 -12.67556 -12.55427 -12.48151 -12.26310 -12.12428 -12.01599 -11.85742 -11.84132 -11.60933 -11.41784 -11.27910 -11.15670 -11.12229 -11.09613 -10.55121 -10.46437 -10.31504 -9.96782 -8.65914 -7.87153 -5.31732 1.45364 1.47519 1.56842 1.77298 2.32546 2.51374 2.98033 3.27501 3.71968 3.74047 3.79719 3.85467 3.91444 3.96023 4.04488 4.10747 4.23637 4.32522 4.43504 4.50365 4.53121 4.54762 4.57172 4.59790 4.65316 4.70265 4.73725 4.74950 4.78341 4.85137 4.86413 4.90147 4.92062 4.94610 5.01847 5.03231 5.10787 5.15754 5.29653 5.30797 5.32960 5.36371 5.39978 5.42232 5.48500 5.55596 5.61561 5.66403 5.68584 5.79678 6.40421 6.41193 6.68120 7.16250 7.39150 7.88825 8.39450 9.19017 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.001740 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.881449 B =16086.795265 C =16306.578911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.083 3.917 4 H 0.077 0.923 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.062 4.062 9 H 0.050 0.950 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.583 6.583 13 N -0.719 5.719 14 C 0.137 3.863 15 C -0.077 4.077 16 C -0.113 4.113 17 C 0.139 3.861 18 N -0.612 5.612 19 C -0.262 4.262 20 H 0.064 0.936 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.178 3.822 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.414 0.586 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.020 0.980 48 H 0.051 0.949 49 H 0.249 0.751 50 H -0.001 1.001 51 H 0.050 0.950 52 H 0.067 0.933 53 H 0.047 0.953 54 H 0.099 0.901 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.418 16.489 1.819 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.081 4.081 9 H 0.069 0.931 10 C -0.171 4.171 11 C 0.293 3.707 12 O -0.464 6.464 13 N -0.371 5.371 14 C 0.013 3.987 15 C -0.095 4.095 16 C -0.152 4.152 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.198 1.198 27 C 0.052 3.948 28 C -0.163 4.163 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.251 0.749 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.018 0.982 51 H 0.068 0.932 52 H 0.085 0.915 53 H 0.066 0.934 54 H 0.117 0.883 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.443 15.832 2.528 31.782 hybrid contribution 0.958 -0.903 -0.192 1.331 sum -26.484 14.928 2.336 30.491 Atomic orbital electron populations 1.22887 0.80531 1.03094 1.00555 1.87958 1.20463 1.28961 1.95132 1.22275 0.95141 0.84355 0.95638 0.90470 1.22020 0.99770 0.99629 0.95998 1.21341 0.95595 0.99273 0.98633 1.21642 0.97157 1.00942 0.95644 1.20709 0.93384 0.99444 0.94567 0.93114 1.21824 0.94973 0.98622 1.01649 1.21396 0.81981 0.84333 0.83008 1.90670 1.74172 1.51059 1.30455 1.46034 1.14714 1.39672 1.36722 1.21186 0.89755 0.91268 0.96507 1.21130 0.93528 0.99640 0.95248 1.21922 0.97303 1.00909 0.95098 1.21084 0.89583 0.93489 0.94415 1.44326 1.47931 1.35427 1.05913 1.19490 0.97443 1.08149 1.14149 0.91819 1.25775 0.96174 1.01714 1.01043 1.70174 1.12776 1.36093 1.39003 0.85327 0.77951 0.80426 0.77055 1.21002 1.21916 1.19779 1.20553 0.93155 0.97300 0.83794 1.21988 0.96802 0.98728 0.98773 1.21727 0.93191 1.00575 0.98983 0.92936 0.89742 0.93643 0.91868 0.89500 0.93862 0.92353 0.93161 0.91224 0.86766 0.86227 0.74915 0.92455 0.93224 0.90388 0.93437 0.89495 0.96247 0.93032 0.94154 0.98247 0.93158 0.91452 0.93415 0.88304 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.27 9.00 -148.98 -1.34 -8.61 16 3 C 0.08 1.07 2.92 30.59 0.09 1.16 16 4 H 0.08 0.70 7.79 -2.39 -0.02 0.68 16 5 C -0.14 -1.74 5.63 30.59 0.17 -1.57 16 6 C -0.11 -2.01 5.78 30.60 0.18 -1.83 16 7 C -0.12 -2.23 4.94 30.60 0.15 -2.08 16 8 C -0.06 -1.09 1.69 -10.79 -0.02 -1.11 16 9 H 0.05 1.27 7.50 -2.39 -0.02 1.26 16 10 C -0.13 -1.90 5.17 29.85 0.15 -1.75 16 11 C 0.50 11.79 7.55 87.66 0.66 12.45 16 12 O -0.58 -19.09 13.97 -3.05 -0.04 -19.14 16 13 N -0.72 -15.29 5.27 -463.06 -2.44 -17.73 16 14 C 0.14 3.70 5.06 86.38 0.44 4.13 16 15 C -0.08 -2.27 2.19 -10.77 -0.02 -2.29 16 16 C -0.11 -3.46 5.25 30.67 0.16 -3.30 16 17 C 0.14 5.51 6.52 86.36 0.56 6.07 16 18 N -0.61 -30.57 2.99 -699.10 -2.09 -32.66 16 19 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 20 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 21 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 22 N -0.93 -55.61 11.19 21.65 0.24 -55.37 16 23 Si 0.96 45.34 29.59 68.60 2.03 47.37 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.18 8.54 5.30 86.36 0.46 8.99 16 28 C -0.12 -4.56 5.36 30.67 0.16 -4.40 16 29 C -0.11 -1.26 4.94 30.60 0.15 -1.11 16 30 H 0.05 0.46 8.09 -2.38 -0.02 0.44 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.46 7.87 -2.39 -0.02 0.44 16 33 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 0.99 7.68 -2.39 -0.02 0.97 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.31 5.95 -2.39 -0.01 1.30 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.41 6.39 7.65 -92.70 -0.71 5.68 16 42 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 1.99 7.15 -2.39 -0.02 1.97 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 49 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 52 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 54 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 55 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -72.42 414.95 2.23 -70.18 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.13 Total: 17.26 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.75 Total: -1.31 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.29 Total: -105.76 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.38 Total: -27.75 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.42 2.23 -70.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073243.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.618 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds