Wall clock time and date at job start Tue Mar 31 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99734 * 2 1 4 4 H 1.08996 * 109.47418 * 29.99998 * 3 2 1 5 5 C 1.53006 * 109.47310 * 269.99656 * 3 2 1 6 6 C 1.53003 * 109.46746 * 300.00355 * 5 3 2 7 7 C 1.52995 * 109.47299 * 299.99232 * 6 5 3 8 8 C 1.53004 * 109.47109 * 60.00558 * 7 6 5 9 9 H 1.09000 * 109.47093 * 59.99273 * 8 7 6 10 10 C 1.52992 * 109.47445 * 179.97438 * 8 7 6 11 11 C 1.50697 * 109.47188 * 294.99954 * 10 8 7 12 12 O 1.21281 * 120.00115 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99994 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00249 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47443 * 180.02562 * 14 13 11 16 16 C 1.53041 * 109.46234 * 295.06614 * 15 14 13 17 17 C 1.53187 * 109.31594 * 178.61198 * 16 15 14 18 18 N 1.46929 * 108.77387 * 54.63952 * 17 16 15 19 19 C 1.36931 * 120.63388 * 126.41204 * 18 17 16 20 20 H 1.08005 * 120.00125 * 332.61027 * 19 18 17 21 21 C 1.38809 * 120.00471 * 152.60748 * 19 18 17 22 22 N 1.31617 * 120.00509 * 159.34647 * 21 19 18 23 23 Si 1.86799 * 119.99714 * 339.34569 * 21 19 18 24 24 H 1.48501 * 109.47150 * 92.94546 * 23 21 19 25 25 H 1.48498 * 109.47183 * 212.94055 * 23 21 19 26 26 H 1.48500 * 109.47189 * 332.94309 * 23 21 19 27 27 C 1.46928 * 118.73763 * 306.38824 * 18 17 16 28 28 C 1.53043 * 109.46272 * 175.00054 * 15 14 13 29 29 C 1.53005 * 109.47209 * 150.00000 * 3 2 1 30 30 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47505 * 300.00015 * 1 2 3 32 32 H 1.09001 * 109.47177 * 60.00459 * 1 2 3 33 33 H 1.08998 * 109.46902 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.46540 * 60.00032 * 5 3 2 35 35 H 1.09003 * 109.46381 * 179.97438 * 6 5 3 36 36 H 1.08992 * 109.47192 * 60.00122 * 6 5 3 37 37 H 1.08998 * 109.47466 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47580 * 300.00987 * 7 6 5 39 39 H 1.09003 * 109.46952 * 55.00415 * 10 8 7 40 40 H 1.09003 * 109.46926 * 175.00107 * 10 8 7 41 41 H 0.96997 * 120.00354 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47258 * 300.00869 * 14 13 11 43 43 H 1.09001 * 109.46743 * 59.99571 * 14 13 11 44 44 H 1.08997 * 109.46190 * 55.02734 * 15 14 13 45 45 H 1.08998 * 109.49957 * 298.57049 * 16 15 14 46 46 H 1.09006 * 109.49549 * 58.66586 * 16 15 14 47 47 H 1.09000 * 109.59006 * 294.84991 * 17 16 15 48 48 H 1.08998 * 109.58715 * 174.42600 * 17 16 15 49 49 H 0.96997 * 120.00662 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58879 * 293.82557 * 27 18 17 51 51 H 1.08996 * 109.70380 * 173.46143 * 27 18 17 52 52 H 1.08998 * 109.49934 * 301.33989 * 28 15 14 53 53 H 1.09004 * 109.49866 * 61.40069 * 28 15 14 54 54 H 1.08998 * 109.47513 * 180.02562 * 29 3 2 55 55 H 1.09006 * 109.46867 * 299.99795 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5001 0.7552 -1.4425 8 6 4.2927 0.2893 0.0001 9 1 3.8493 -0.7064 0.0001 10 6 5.6414 0.2466 0.7211 11 6 6.5178 -0.8018 0.0857 12 8 6.1042 -1.4513 -0.8513 13 7 7.7612 -1.0178 0.5587 14 6 8.6134 -2.0366 -0.0593 15 6 9.9620 -2.0794 0.6619 16 6 10.6957 -0.7531 0.4504 17 6 12.0299 -0.7866 1.2023 18 7 12.7863 -1.9700 0.7708 19 6 14.0688 -1.8474 0.3070 20 1 14.3888 -0.9273 -0.1593 21 6 14.9578 -2.9056 0.4363 22 7 16.0224 -2.9688 -0.3350 23 14 14.6431 -4.2401 1.7049 24 1 13.8914 -5.3550 1.0746 25 1 15.9396 -4.7473 2.2218 26 1 13.8483 -3.6790 2.8268 27 6 12.1405 -3.2876 0.8469 28 6 10.8050 -3.2260 0.0990 29 6 3.3588 1.2634 0.7213 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.6613 2.7670 -1.4425 34 1 1.2568 1.8014 -1.9563 35 1 3.2989 1.1291 -3.1915 36 1 2.7081 -0.1983 -2.1637 37 1 5.1656 0.0617 -1.9565 38 1 4.9434 1.7510 -1.4424 39 1 6.1255 1.2202 0.6443 40 1 5.4842 0.0009 1.7714 41 1 8.0919 -0.4987 1.3084 42 1 8.1295 -3.0104 0.0175 43 1 8.7701 -1.7907 -1.1096 44 1 9.7989 -2.2380 1.7278 45 1 10.8812 -0.6056 -0.6135 46 1 10.0844 0.0654 0.8305 47 1 11.8436 -0.8430 2.2748 48 1 12.6000 0.1142 0.9752 49 1 16.6435 -3.7085 -0.2450 50 1 11.9633 -3.5479 1.8904 51 1 12.7826 -4.0386 0.3869 52 1 10.2716 -4.1676 0.2289 53 1 10.9891 -3.0556 -0.9618 54 1 3.8020 2.2592 0.7217 55 1 3.2110 0.9315 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331073244.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:20 Heat of formation + Delta-G solvation = -112.477409 kcal Electronic energy + Delta-G solvation = -30095.855485 eV Core-core repulsion = 26131.160413 eV Total energy + Delta-G solvation = -3964.695072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.14800 -40.12002 -39.44198 -37.16836 -36.34744 -34.49745 -33.41242 -32.74695 -31.86737 -31.13171 -29.17361 -27.61293 -27.24489 -25.43757 -24.27758 -23.44474 -22.96958 -22.41708 -21.25145 -20.72388 -20.47799 -18.78637 -17.96427 -17.36135 -17.05549 -16.81525 -16.57154 -16.49600 -16.11615 -15.91532 -15.70248 -15.42946 -15.17356 -15.03321 -14.65014 -14.47759 -14.40390 -14.24597 -13.91613 -13.65513 -13.45489 -13.41660 -13.27069 -12.98473 -12.93568 -12.67946 -12.55453 -12.45569 -12.24252 -12.12744 -12.11344 -11.86056 -11.72945 -11.58507 -11.42825 -11.31036 -11.19186 -11.17530 -11.14372 -10.69286 -10.47472 -10.32003 -9.97237 -8.91115 -8.15962 -5.46961 1.30672 1.41183 1.50656 1.77201 2.31560 2.42417 2.97514 3.06573 3.38567 3.73613 3.78582 3.81617 3.87690 3.90642 3.97520 4.04880 4.23227 4.31718 4.38890 4.42998 4.45325 4.50026 4.55346 4.56642 4.59227 4.63821 4.66434 4.72521 4.74958 4.78063 4.81853 4.85834 4.89152 4.90762 4.91116 5.01479 5.02005 5.10144 5.12643 5.17865 5.22418 5.28368 5.32145 5.35650 5.40423 5.45854 5.56965 5.64484 5.68118 5.88202 6.13479 6.40498 6.67979 6.94230 7.39412 7.64965 8.05024 9.04081 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.001812 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.545525 B =15449.639934 C =15616.759720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.083 3.917 4 H 0.077 0.923 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.062 4.062 9 H 0.052 0.948 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.583 6.583 13 N -0.719 5.719 14 C 0.136 3.864 15 C -0.079 4.079 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.622 5.622 19 C -0.247 4.247 20 H 0.049 0.951 21 C -0.039 4.039 22 N -0.959 5.959 23 Si 0.950 3.050 24 H -0.277 1.277 25 H -0.313 1.313 26 H -0.257 1.257 27 C 0.121 3.879 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.415 0.585 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.261 0.739 50 H 0.037 0.963 51 H 0.045 0.955 52 H 0.079 0.921 53 H 0.049 0.951 54 H 0.098 0.902 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.348 11.671 5.721 35.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.175 4.175 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.081 4.081 9 H 0.070 0.930 10 C -0.171 4.171 11 C 0.293 3.707 12 O -0.464 6.464 13 N -0.371 5.371 14 C 0.011 3.989 15 C -0.097 4.097 16 C -0.156 4.156 17 C 0.017 3.983 18 N -0.347 5.347 19 C -0.377 4.377 20 H 0.067 0.933 21 C -0.234 4.234 22 N -0.606 5.606 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.242 1.242 26 H -0.182 1.182 27 C -0.004 4.004 28 C -0.161 4.161 29 C -0.145 4.145 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.063 0.937 52 H 0.098 0.902 53 H 0.068 0.932 54 H 0.116 0.884 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -33.395 10.993 5.035 35.517 hybrid contribution 0.760 -0.704 0.164 1.049 sum -32.635 10.289 5.200 34.611 Atomic orbital electron populations 1.22886 0.80535 1.03114 1.00541 1.87954 1.20451 1.28914 1.95127 1.22271 0.95189 0.84369 0.95555 0.90476 1.22026 0.99737 0.99606 0.96093 1.21339 0.95625 0.99305 0.98592 1.21644 0.97114 1.00898 0.95795 1.20704 0.93466 0.99462 0.94428 0.92992 1.21820 0.94931 0.98620 1.01708 1.21384 0.82043 0.84311 0.82978 1.90675 1.74210 1.51049 1.30427 1.46006 1.14520 1.39896 1.36712 1.21184 0.89617 0.91571 0.96510 1.21166 0.92481 0.95467 1.00624 1.21948 0.96283 0.97110 1.00254 1.21148 0.91971 0.88726 0.96488 1.44505 1.11368 1.03276 1.75511 1.18872 0.87451 1.01060 1.30339 0.93315 1.25940 0.95789 1.01137 1.00502 1.69977 1.16523 1.33842 1.40237 0.85865 0.75473 0.79566 0.81249 1.20350 1.24164 1.18158 1.21375 0.93836 0.87443 0.97777 1.21895 0.95591 0.98911 0.99734 1.21726 0.93142 1.00571 0.99025 0.89687 0.92914 0.93722 0.89589 0.91896 0.92506 0.93775 0.93214 0.91359 0.86337 0.86560 0.74800 0.92255 0.93349 0.89201 0.93773 0.88963 0.94019 0.92943 0.93063 0.94475 0.93708 0.90231 0.93171 0.88396 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.92 9.00 -148.98 -1.34 -8.26 16 3 C 0.08 1.02 2.92 30.60 0.09 1.11 16 4 H 0.08 0.65 7.79 -2.39 -0.02 0.63 16 5 C -0.14 -1.71 5.63 30.60 0.17 -1.54 16 6 C -0.11 -1.99 5.78 30.59 0.18 -1.82 16 7 C -0.12 -2.21 4.94 30.59 0.15 -2.06 16 8 C -0.06 -1.02 1.69 -10.79 -0.02 -1.04 16 9 H 0.05 1.24 7.49 -2.39 -0.02 1.22 16 10 C -0.13 -1.72 5.18 29.84 0.15 -1.57 16 11 C 0.50 10.94 7.55 87.66 0.66 11.60 16 12 O -0.58 -18.28 13.97 -3.03 -0.04 -18.32 16 13 N -0.72 -13.54 5.27 -463.07 -2.44 -15.98 16 14 C 0.14 3.27 5.06 86.38 0.44 3.70 16 15 C -0.08 -2.00 2.19 -10.77 -0.02 -2.03 16 16 C -0.12 -3.20 5.25 30.67 0.16 -3.04 16 17 C 0.14 5.01 6.52 86.36 0.56 5.58 16 18 N -0.62 -28.58 2.77 -699.11 -1.94 -30.51 16 19 C -0.25 -14.09 10.03 84.03 0.84 -13.24 16 20 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 21 C -0.04 -2.32 5.23 84.86 0.44 -1.87 16 22 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 23 Si 0.95 46.72 24.35 68.60 1.67 48.39 16 24 H -0.28 -12.93 6.62 99.48 0.66 -12.27 16 25 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 26 H -0.26 -11.91 6.63 99.48 0.66 -11.25 16 27 C 0.12 4.96 4.20 86.36 0.36 5.32 16 28 C -0.12 -3.94 5.36 30.67 0.16 -3.78 16 29 C -0.11 -1.16 4.95 30.60 0.15 -1.01 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 32 H 0.04 0.43 7.87 -2.39 -0.02 0.41 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 0.99 7.68 -2.39 -0.02 0.98 16 37 H 0.05 1.29 5.95 -2.39 -0.01 1.27 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.41 5.24 7.65 -92.71 -0.71 4.53 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.81 7.15 -2.38 -0.02 1.79 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.04 1.45 7.07 -2.39 -0.02 1.43 16 51 H 0.04 2.09 4.50 -2.39 -0.01 2.08 16 52 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 54 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 55 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -76.27 408.50 1.97 -74.30 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.04 Total: 15.32 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.72 Total: -4.17 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.07 Total: -107.25 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.38 Total: -26.58 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Total: -76.27 1.97 -74.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073244.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.179 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds