Wall clock time and date at job start Tue Mar 31 2020 22:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00008 * 2 1 4 4 H 1.09000 * 109.47030 * 30.00599 * 3 2 1 5 5 C 1.53000 * 109.47177 * 269.99913 * 3 2 1 6 6 C 1.53005 * 109.46979 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47040 * 60.00107 * 6 5 3 8 8 C 1.52998 * 109.47468 * 299.99981 * 7 6 5 9 9 H 1.09000 * 109.47384 * 300.00146 * 8 7 6 10 10 C 1.52996 * 109.47468 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47120 * 64.99873 * 10 8 7 12 12 O 1.21283 * 120.00022 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00049 * 180.02562 * 11 10 8 14 14 C 1.46503 * 119.99723 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47066 * 180.02562 * 14 13 11 16 16 C 1.53032 * 109.46095 * 175.00271 * 15 14 13 17 17 C 1.53194 * 109.31260 * 181.38588 * 16 15 14 18 18 N 1.46926 * 108.77186 * 305.36012 * 17 16 15 19 19 C 1.36939 * 120.62747 * 233.58348 * 18 17 16 20 20 H 1.08000 * 120.00159 * 25.20526 * 19 18 17 21 21 C 1.38819 * 119.99763 * 205.20118 * 19 18 17 22 22 N 1.31612 * 119.99798 * 202.59164 * 21 19 18 23 23 Si 1.86801 * 119.99845 * 22.59464 * 21 19 18 24 24 H 1.48495 * 109.47088 * 264.61036 * 23 21 19 25 25 H 1.48493 * 109.47094 * 24.61357 * 23 21 19 26 26 H 1.48506 * 109.46740 * 144.61070 * 23 21 19 27 27 C 1.46924 * 118.73892 * 53.86166 * 18 17 16 28 28 C 1.53050 * 109.45597 * 295.06694 * 15 14 13 29 29 C 1.53003 * 109.46669 * 150.00336 * 3 2 1 30 30 H 1.08999 * 109.46778 * 300.00054 * 1 2 3 31 31 H 1.09000 * 109.47465 * 59.99373 * 1 2 3 32 32 H 1.08991 * 109.47683 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46973 * 60.00573 * 5 3 2 34 34 H 1.08997 * 109.47276 * 300.00020 * 5 3 2 35 35 H 1.09000 * 109.46928 * 300.00503 * 6 5 3 36 36 H 1.08991 * 109.47182 * 180.02562 * 6 5 3 37 37 H 1.09001 * 109.46839 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47358 * 60.00138 * 7 6 5 39 39 H 1.08998 * 109.47140 * 305.00391 * 10 8 7 40 40 H 1.09001 * 109.47230 * 185.00112 * 10 8 7 41 41 H 0.96997 * 120.00382 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47572 * 60.00010 * 14 13 11 43 43 H 1.09001 * 109.47206 * 299.99882 * 14 13 11 44 44 H 1.08992 * 109.46040 * 55.02193 * 15 14 13 45 45 H 1.08996 * 109.50263 * 61.43229 * 16 15 14 46 46 H 1.09006 * 109.49410 * 301.33335 * 16 15 14 47 47 H 1.09006 * 109.58756 * 185.57333 * 17 16 15 48 48 H 1.08998 * 109.70489 * 65.21561 * 17 16 15 49 49 H 0.97004 * 120.00185 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58551 * 65.92916 * 27 18 17 51 51 H 1.08996 * 109.58461 * 186.34766 * 27 18 17 52 52 H 1.08993 * 109.49982 * 298.56335 * 28 15 14 53 53 H 1.08997 * 109.49916 * 58.63125 * 28 15 14 54 54 H 1.08997 * 109.47601 * 60.00092 * 29 3 2 55 55 H 1.09002 * 109.46995 * 299.99688 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1689 -1.4424 7 6 4.1893 3.1260 -0.7214 8 6 3.9819 2.6601 0.7211 9 1 3.3170 3.3542 1.2351 10 6 5.3307 2.6166 1.4420 11 6 5.8877 4.0127 1.5502 12 8 5.2667 4.9503 1.0959 13 7 7.0759 4.2195 2.1518 14 6 7.6170 5.5768 2.2574 15 6 8.9666 5.5332 2.9771 16 6 9.5895 6.9310 2.9774 17 6 10.9558 6.8766 3.6681 18 7 10.7868 6.2909 5.0050 19 6 11.2453 6.9461 6.1167 20 1 11.3557 8.0203 6.1033 21 6 11.5681 6.2294 7.2609 22 7 11.5753 6.8287 8.4326 23 14 11.9921 4.4143 7.1374 24 1 10.7787 3.6029 7.4099 25 1 12.4918 4.1145 5.7716 26 1 13.0431 4.0828 8.1329 27 6 10.1221 4.9863 5.1258 28 6 8.7603 5.0645 4.4193 29 6 3.3589 1.2631 0.7212 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0275 -0.0005 33 1 1.2568 1.8015 -1.9563 34 1 2.8829 1.0775 -1.9563 35 1 2.1757 3.8630 -0.9284 36 1 2.9880 3.5010 -2.4700 37 1 4.6328 4.1217 -0.7210 38 1 4.8542 2.4319 -1.2353 39 1 6.0237 1.9917 0.8787 40 1 5.1958 2.2008 2.4405 41 1 7.5724 3.4698 2.5154 42 1 6.9242 6.2014 2.8213 43 1 7.7514 5.9931 1.2590 44 1 9.6308 4.8397 2.4616 45 1 8.9376 7.6198 3.5146 46 1 9.7145 7.2738 1.9503 47 1 11.3597 7.8850 3.7593 48 1 11.6391 6.2608 3.0832 49 1 11.8012 6.3280 9.2321 50 1 10.7368 4.2181 4.6565 51 1 9.9757 4.7469 6.1791 52 1 8.1161 5.7708 4.9429 53 1 8.2945 4.0790 4.4185 54 1 4.0242 0.5693 0.2074 55 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331073245.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:26 Heat of formation + Delta-G solvation = -113.355055 kcal Electronic energy + Delta-G solvation = -29921.362374 eV Core-core repulsion = 25956.629244 eV Total energy + Delta-G solvation = -3964.733130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15759 -40.07796 -39.43469 -37.51827 -36.37242 -34.52568 -33.48406 -32.72791 -31.85883 -31.06706 -29.17601 -27.59337 -27.29743 -25.37630 -24.36181 -23.35926 -23.04760 -22.30163 -21.36423 -20.82620 -20.59654 -18.79923 -17.98756 -17.50994 -17.13997 -16.87660 -16.51872 -16.45988 -16.04297 -15.92502 -15.71395 -15.46707 -15.22164 -14.96799 -14.78272 -14.64162 -14.28415 -14.20466 -14.03509 -13.79082 -13.69346 -13.38079 -13.27109 -13.00379 -12.91682 -12.70373 -12.52697 -12.43245 -12.20333 -12.09266 -11.94198 -11.93317 -11.72147 -11.59328 -11.52777 -11.36676 -11.31822 -11.26922 -11.17912 -10.67775 -10.59842 -10.37856 -9.97898 -8.94241 -8.15376 -5.43817 1.30183 1.42627 1.51754 1.74410 2.27171 2.42942 2.82596 3.06099 3.39075 3.66083 3.75501 3.78745 3.86296 3.89962 4.01263 4.10500 4.11814 4.23224 4.32228 4.39920 4.43695 4.49733 4.51262 4.52204 4.54531 4.55277 4.66557 4.67299 4.71214 4.75419 4.76793 4.82732 4.85819 4.86729 4.88383 5.02534 5.05574 5.07811 5.11090 5.18974 5.22513 5.23855 5.25976 5.28419 5.33396 5.43204 5.54553 5.54828 5.63719 5.87016 6.13097 6.29046 6.64758 6.93963 7.35509 7.65769 8.04485 9.04585 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.001905 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.854447 B =14694.920781 C =15545.241705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.087 3.913 4 H 0.059 0.941 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.062 4.062 9 H 0.061 0.939 10 C -0.132 4.132 11 C 0.508 3.492 12 O -0.580 6.580 13 N -0.721 5.721 14 C 0.136 3.864 15 C -0.079 4.079 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.622 5.622 19 C -0.249 4.249 20 H 0.048 0.952 21 C -0.042 4.042 22 N -0.959 5.959 23 Si 0.950 3.050 24 H -0.274 1.274 25 H -0.256 1.256 26 H -0.314 1.314 27 C 0.119 3.881 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.413 0.587 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.260 0.740 50 H 0.040 0.960 51 H 0.044 0.956 52 H 0.045 0.955 53 H 0.084 0.916 54 H 0.077 0.923 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 -15.521 -21.956 33.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.029 3.971 4 H 0.077 0.923 5 C -0.172 4.172 6 C -0.150 4.150 7 C -0.157 4.157 8 C -0.081 4.081 9 H 0.080 0.920 10 C -0.171 4.171 11 C 0.296 3.704 12 O -0.460 6.460 13 N -0.374 5.374 14 C 0.012 3.988 15 C -0.098 4.098 16 C -0.158 4.158 17 C 0.018 3.982 18 N -0.347 5.347 19 C -0.379 4.379 20 H 0.066 0.934 21 C -0.236 4.236 22 N -0.606 5.606 23 Si 0.779 3.221 24 H -0.201 1.201 25 H -0.181 1.181 26 H -0.244 1.244 27 C -0.006 4.006 28 C -0.158 4.158 29 C -0.143 4.143 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.250 0.750 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.063 0.937 52 H 0.064 0.936 53 H 0.102 0.898 54 H 0.095 0.905 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.717 -15.012 -22.143 33.233 hybrid contribution 0.462 -0.210 0.979 1.103 sum -19.254 -15.221 -21.165 32.409 Atomic orbital electron populations 1.22932 0.80055 1.03633 1.00514 1.87866 1.20937 1.28550 1.95217 1.22183 0.95098 0.83962 0.95841 0.92283 1.21986 1.01352 0.97058 0.96808 1.21428 0.96638 0.96163 1.00800 1.21694 0.97430 1.01884 0.94703 1.20750 0.95164 0.96026 0.96206 0.92030 1.21767 0.98116 0.92730 1.04534 1.21230 0.80416 0.92303 0.76467 1.90662 1.60092 1.46071 1.49157 1.46052 1.21613 1.10199 1.59489 1.21228 0.93868 0.83774 0.99975 1.21187 0.95499 0.98167 0.94968 1.21871 0.96895 0.96177 1.00867 1.21104 0.95525 0.97220 0.84350 1.44521 1.66494 1.20815 1.02823 1.18893 1.37330 0.91069 0.90580 0.93396 1.25912 1.00508 1.02359 0.94831 1.70005 1.53438 1.38806 0.98309 0.85847 0.77241 0.81604 0.77393 1.20091 1.18056 1.24368 1.21501 0.93377 0.87123 0.98608 1.22037 0.96675 1.01409 0.95719 1.21574 0.95078 0.96516 1.01131 0.93559 0.93491 0.88590 0.91672 0.91270 0.92604 0.91289 0.91973 0.91533 0.86434 0.86792 0.75000 0.93351 0.91439 0.89165 0.93347 0.89344 0.93066 0.94218 0.93077 0.94179 0.93747 0.93635 0.89786 0.90458 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.41 -6.62 10.35 -148.98 -1.54 -8.16 16 3 C 0.09 1.25 2.61 30.60 0.08 1.33 16 4 H 0.06 0.84 7.79 -2.39 -0.02 0.83 16 5 C -0.13 -1.80 5.54 30.60 0.17 -1.63 16 6 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 7 C -0.12 -1.95 4.94 30.59 0.15 -1.80 16 8 C -0.06 -0.93 1.84 -10.81 -0.02 -0.95 16 9 H 0.06 1.16 7.96 -2.39 -0.02 1.14 16 10 C -0.13 -1.68 5.17 29.85 0.15 -1.53 16 11 C 0.51 10.29 7.55 87.66 0.66 10.95 16 12 O -0.58 -16.49 13.97 -3.04 -0.04 -16.53 16 13 N -0.72 -13.23 5.27 -463.04 -2.44 -15.67 16 14 C 0.14 3.06 5.06 86.38 0.44 3.50 16 15 C -0.08 -1.95 2.19 -10.76 -0.02 -1.97 16 16 C -0.12 -3.38 5.36 30.67 0.16 -3.21 16 17 C 0.14 5.18 6.51 86.36 0.56 5.74 16 18 N -0.62 -28.38 2.79 -698.26 -1.95 -30.33 16 19 C -0.25 -14.14 10.05 84.03 0.84 -13.29 16 20 H 0.05 3.00 8.04 -2.91 -0.02 2.98 16 21 C -0.04 -2.45 5.21 84.86 0.44 -2.01 16 22 N -0.96 -60.71 13.97 21.65 0.30 -60.41 16 23 Si 0.95 45.84 24.36 68.60 1.67 47.51 16 24 H -0.27 -12.38 6.68 99.48 0.66 -11.71 16 25 H -0.26 -11.59 6.54 99.48 0.65 -10.94 16 26 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 27 C 0.12 4.69 4.23 86.51 0.37 5.05 16 28 C -0.12 -3.57 5.26 30.82 0.16 -3.41 16 29 C -0.11 -1.38 4.85 30.58 0.15 -1.23 16 30 H 0.05 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.05 0.43 7.87 -2.39 -0.02 0.41 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.80 7.87 -2.39 -0.02 0.78 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.35 5.95 -2.39 -0.01 1.34 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 5.49 7.65 -92.71 -0.71 4.78 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.05 1.95 7.92 -2.38 -0.02 1.93 16 48 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 50 H 0.04 1.48 7.08 -2.39 -0.02 1.46 16 51 H 0.04 2.00 4.36 -2.39 -0.01 1.99 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.08 1.96 7.14 -2.39 -0.02 1.94 16 54 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 55 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.11 410.46 1.74 -71.37 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.04 Total: 16.67 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.71 Total: -4.44 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.09 Total: -106.41 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.58 Total: -24.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -73.11 1.74 -71.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331073245.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.985 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds