Wall clock time and date at job start Tue Mar 31 2020 22:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21278 * 120.00169 * 2 1 4 4 N 1.34774 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.63412 * 174.39034 * 4 2 1 6 6 C 1.53191 * 108.89635 * 126.29726 * 5 4 2 7 7 C 1.53351 * 109.14810 * 54.57935 * 6 5 4 8 8 C 1.52996 * 109.41674 * 178.67567 * 7 6 5 9 9 C 1.53005 * 109.47138 * 295.12628 * 8 7 6 10 10 C 1.50694 * 109.46895 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00572 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00304 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47317 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46633 * 300.00293 * 14 13 12 16 16 C 1.53003 * 109.47127 * 59.99692 * 14 13 12 17 17 C 1.52996 * 109.47323 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.46885 * 179.97438 * 17 14 13 19 19 H 1.07990 * 120.00296 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99297 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00427 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99454 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47331 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47345 * 120.00248 * 22 20 18 25 25 H 1.48504 * 109.47238 * 240.00103 * 22 20 18 26 26 C 1.53042 * 109.60892 * 298.71417 * 7 6 5 27 27 C 1.46929 * 120.63138 * 354.36963 * 4 2 1 28 28 H 1.08994 * 109.47451 * 184.87589 * 1 2 3 29 29 H 1.09003 * 109.47092 * 304.87114 * 1 2 3 30 30 H 1.09002 * 109.47411 * 64.86950 * 1 2 3 31 31 H 1.09006 * 109.58587 * 246.16211 * 5 4 2 32 32 H 1.09002 * 109.58306 * 6.43800 * 5 4 2 33 33 H 1.09002 * 109.49550 * 174.65800 * 6 5 4 34 34 H 1.09000 * 109.49262 * 294.75802 * 6 5 4 35 35 H 1.09007 * 109.42303 * 58.74836 * 7 6 5 36 36 H 1.08996 * 109.47294 * 55.13125 * 8 7 6 37 37 H 1.09006 * 109.47016 * 175.13045 * 8 7 6 38 38 H 1.08999 * 109.46736 * 300.00178 * 9 8 7 39 39 H 1.08997 * 109.46797 * 60.00413 * 9 8 7 40 40 H 0.96999 * 119.99559 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47017 * 300.00242 * 13 12 10 42 42 H 1.08995 * 109.47144 * 60.00210 * 13 12 10 43 43 H 1.09001 * 109.47617 * 60.00082 * 15 14 13 44 44 H 1.09003 * 109.47226 * 179.97438 * 15 14 13 45 45 H 1.09006 * 109.47291 * 299.99615 * 15 14 13 46 46 H 1.08996 * 109.46606 * 60.00331 * 16 14 13 47 47 H 1.08998 * 109.47118 * 180.02562 * 16 14 13 48 48 H 1.08997 * 109.46971 * 300.00189 * 16 14 13 49 49 H 1.08996 * 109.47294 * 300.00210 * 17 14 13 50 50 H 1.09006 * 109.47016 * 60.00130 * 17 14 13 51 51 H 0.97004 * 119.99569 * 180.02562 * 21 20 18 52 52 H 1.09006 * 109.49582 * 301.42348 * 26 7 6 53 53 H 1.09000 * 109.52410 * 181.34160 * 26 7 6 54 54 H 1.08999 * 109.58492 * 353.41283 * 27 4 2 55 55 H 1.09000 * 109.58923 * 113.70186 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6448 -1.1864 -0.1241 6 6 4.2303 -1.9932 1.0391 7 6 3.5805 -3.3820 1.0653 8 6 4.1848 -4.2049 2.2048 9 6 5.6681 -4.4535 1.9234 10 6 6.2631 -5.2645 3.0455 11 8 5.5692 -5.6101 3.9782 12 7 7.5663 -5.6068 3.0121 13 6 8.1450 -6.3947 4.1031 14 6 9.6282 -6.6435 3.8217 15 6 9.7759 -7.4093 2.5054 16 6 10.3592 -5.3034 3.7169 17 6 10.2324 -7.4669 4.9609 18 6 11.6931 -7.7124 4.6833 19 1 12.1454 -7.3200 3.7846 20 6 12.4520 -8.4381 5.5769 21 7 11.9012 -8.9163 6.6711 22 14 14.2629 -8.7418 5.2332 23 1 14.6362 -8.1034 3.9454 24 1 15.0791 -8.1607 6.3292 25 1 14.5129 -10.2034 5.1513 26 6 2.0724 -3.2394 1.2835 27 6 1.4655 -2.4446 0.1229 28 1 -0.3634 -1.0239 0.0873 29 1 -0.3633 0.5876 0.8432 30 1 -0.3634 0.4364 -0.9304 31 1 3.9256 -1.6512 -1.0693 32 1 4.0277 -0.1664 -0.0906 33 1 5.3074 -2.0943 0.9059 34 1 4.0259 -1.4786 1.9779 35 1 3.7640 -3.8861 0.1163 36 1 4.0793 -3.6594 3.1425 37 1 3.6642 -5.1596 2.2793 38 1 5.7734 -4.9991 0.9857 39 1 6.1887 -3.4988 1.8489 40 1 8.1212 -5.3307 2.2659 41 1 8.0400 -5.8489 5.0408 42 1 7.6240 -7.3491 4.1780 43 1 9.3454 -6.8230 1.6936 44 1 10.8326 -7.5862 2.3046 45 1 9.2552 -8.3640 2.5800 46 1 10.2538 -4.7579 4.6546 47 1 11.4157 -5.4807 3.5160 48 1 9.9286 -4.7173 2.9051 49 1 10.1270 -6.9218 5.8988 50 1 9.7115 -8.4216 5.0350 51 1 12.4353 -9.4265 7.2999 52 1 1.8885 -2.7132 2.2203 53 1 1.6154 -4.2281 1.3257 54 1 0.4108 -2.2550 0.3221 55 1 1.5666 -3.0110 -0.8028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345896693.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:29 Heat of formation + Delta-G solvation = -130.079757 kcal Electronic energy + Delta-G solvation = -29383.363240 eV Core-core repulsion = 25417.904872 eV Total energy + Delta-G solvation = -3965.458367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.24215 -40.81443 -38.95120 -38.46512 -35.61486 -35.20886 -33.92028 -32.60595 -31.99678 -30.05937 -29.11896 -27.99345 -27.95389 -26.52205 -24.84753 -24.15726 -23.30331 -21.51217 -21.09764 -19.95516 -19.74715 -18.38007 -18.24015 -17.77786 -16.90793 -16.80472 -16.72484 -16.43016 -16.39342 -15.67462 -15.23236 -15.21639 -14.94512 -14.67317 -14.64163 -14.46286 -14.34507 -14.15821 -13.94252 -13.86014 -13.66682 -13.37528 -13.00112 -12.88414 -12.78013 -12.72497 -12.68524 -12.58337 -12.34197 -12.22790 -12.12276 -11.98970 -11.94969 -11.73070 -11.53518 -11.42188 -11.22573 -11.14127 -10.88592 -10.75267 -10.66149 -10.52896 -10.01086 -9.64023 -8.14687 -6.22658 1.41580 1.42673 1.54406 1.60472 1.74072 2.09704 2.31514 2.45519 3.19923 3.63506 3.73590 3.75591 3.89420 3.97763 4.03478 4.08540 4.15863 4.23384 4.23612 4.33457 4.42732 4.46768 4.53069 4.63154 4.68165 4.69992 4.71788 4.72889 4.82168 4.84714 4.88495 4.97076 4.99356 5.01238 5.06024 5.12122 5.13090 5.14389 5.20694 5.26034 5.36587 5.42325 5.49647 5.50296 5.54446 5.56973 5.59745 5.61158 5.80455 5.89685 6.29890 6.44285 6.67158 6.93114 7.16651 7.36489 7.45412 8.98014 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032853 B = 0.001581 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.088244 B =17701.211852 C =18087.284240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.612 5.612 5 C 0.106 3.894 6 C -0.127 4.127 7 C -0.079 4.079 8 C -0.093 4.093 9 C -0.132 4.132 10 C 0.500 3.500 11 O -0.597 6.597 12 N -0.712 5.712 13 C 0.141 3.859 14 C -0.066 4.066 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.039 3.961 18 C -0.513 4.513 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.256 1.256 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.131 4.131 27 C 0.100 3.900 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.414 0.586 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.055 0.945 48 H 0.072 0.928 49 H -0.017 1.017 50 H -0.015 1.015 51 H 0.259 0.741 52 H 0.053 0.947 53 H 0.092 0.908 54 H 0.113 0.887 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 13.579 -20.395 33.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.291 3.709 3 O -0.490 6.490 4 N -0.345 5.345 5 C -0.016 4.016 6 C -0.165 4.165 7 C -0.097 4.097 8 C -0.131 4.131 9 C -0.171 4.171 10 C 0.288 3.712 11 O -0.478 6.478 12 N -0.365 5.365 13 C 0.017 3.983 14 C -0.066 4.066 15 C -0.178 4.178 16 C -0.179 4.179 17 C 0.001 3.999 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.170 4.170 27 C -0.021 4.021 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.252 0.748 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.002 0.998 50 H 0.003 0.997 51 H 0.068 0.932 52 H 0.072 0.928 53 H 0.111 0.889 54 H 0.130 0.870 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.677 13.772 -19.609 32.991 hybrid contribution 1.440 -0.435 0.818 1.712 sum -21.237 13.336 -18.792 31.337 Atomic orbital electron populations 1.22068 0.88738 1.06568 1.05885 1.21603 0.92343 0.82661 0.74327 1.90687 1.72046 1.33163 1.53057 1.48380 1.07729 1.06929 1.71445 1.21629 0.79598 1.01070 0.99307 1.22064 1.01283 0.95511 0.97680 1.21188 0.94748 0.94638 0.99125 1.21291 0.93487 1.00133 0.98187 1.21800 0.97274 1.01179 0.96855 1.21644 0.81505 0.79708 0.88299 1.90682 1.61513 1.57139 1.38455 1.46057 1.10573 1.54832 1.25022 1.21142 0.93505 0.94190 0.89486 1.20713 0.91695 0.96913 0.97276 1.21689 1.01951 0.98931 0.95219 1.21692 1.00655 0.94840 1.00676 1.18984 0.95200 0.93182 0.92515 1.21637 0.95190 1.32065 1.06203 0.90817 1.25970 1.03195 0.96063 0.95090 1.70135 1.37845 1.37809 1.12253 0.85473 0.79803 0.77646 0.78565 1.17932 1.21148 1.21058 1.21983 0.95380 1.01348 0.98244 1.22155 0.97583 0.82743 0.99596 0.87059 0.88667 0.87750 0.89541 0.91594 0.88982 0.93518 0.88626 0.93623 0.92039 0.85851 0.86719 0.74771 0.94194 0.93923 0.90823 0.92650 0.94510 0.94692 0.92614 0.90876 0.99829 0.99684 0.93209 0.92815 0.88909 0.86955 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.11 71.23 0.72 -0.52 16 2 C 0.50 8.34 7.79 87.66 0.68 9.02 16 3 O -0.61 -16.55 16.52 -3.02 -0.05 -16.60 16 4 N -0.61 -7.50 2.97 -818.89 -2.43 -9.93 16 5 C 0.11 1.36 6.43 86.36 0.56 1.91 16 6 C -0.13 -1.43 5.16 30.78 0.16 -1.27 16 7 C -0.08 -0.72 2.15 -10.66 -0.02 -0.74 16 8 C -0.09 -1.40 3.97 30.59 0.12 -1.28 16 9 C -0.13 -1.86 5.46 29.85 0.16 -1.70 16 10 C 0.50 12.94 7.83 87.65 0.69 13.62 16 11 O -0.60 -21.68 15.98 -3.02 -0.05 -21.73 16 12 N -0.71 -18.10 4.96 -463.08 -2.30 -20.39 16 13 C 0.14 4.97 4.56 86.38 0.39 5.37 16 14 C -0.07 -2.43 0.54 -52.18 -0.03 -2.46 16 15 C -0.12 -3.89 8.05 71.98 0.58 -3.32 16 16 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 17 C 0.04 1.97 4.04 29.85 0.12 2.09 16 18 C -0.51 -27.37 7.65 25.60 0.20 -27.17 16 19 H 0.07 3.67 5.68 -2.92 -0.02 3.65 16 20 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 21 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 22 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 C -0.13 -1.03 5.36 30.67 0.16 -0.87 16 27 C 0.10 0.53 6.31 86.36 0.54 1.07 16 28 H 0.11 0.11 5.14 -2.39 -0.01 0.10 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 32 H 0.07 1.20 7.00 -2.39 -0.02 1.18 16 33 H 0.09 0.79 6.52 -2.39 -0.02 0.77 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.06 1.07 8.10 -2.38 -0.02 1.06 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 1.17 6.53 -2.39 -0.02 1.16 16 40 H 0.41 7.68 6.16 -92.71 -0.57 7.10 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 44 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 45 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 47 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 48 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 49 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 50 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 51 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 53 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.11 0.12 5.14 -2.39 -0.01 0.10 16 55 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -80.94 419.27 3.86 -77.08 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.30 Total: 12.58 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 6.08 Total: -9.54 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -4.45 Total: -87.24 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.10 Total: -38.33 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -80.94 3.86 -77.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896693.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.998 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds