Wall clock time and date at job start Tue Mar 31 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00240 * 2 1 4 4 C 1.52993 * 109.47505 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47432 * 183.74583 * 4 3 2 6 6 C 1.50695 * 110.01862 * 305.70278 * 5 4 3 7 7 O 1.21284 * 120.00387 * 123.99857 * 6 5 4 8 8 N 1.34780 * 120.00025 * 304.00389 * 6 5 4 9 9 C 1.46500 * 120.00046 * 174.71005 * 8 6 5 10 10 C 1.53003 * 109.47010 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.50103 * 304.94194 * 10 9 8 12 12 C 1.53040 * 109.49639 * 184.83684 * 10 9 8 13 13 C 1.53046 * 109.53652 * 178.68424 * 12 10 9 14 14 C 1.53195 * 109.30906 * 61.37105 * 13 12 10 15 15 N 1.46929 * 108.77510 * 305.36233 * 14 13 12 16 16 C 1.36936 * 120.62836 * 233.63287 * 15 14 13 17 17 H 1.08008 * 119.99703 * 149.77115 * 16 15 14 18 18 C 1.38810 * 120.00305 * 329.76739 * 16 15 14 19 19 N 1.31618 * 120.00260 * 162.76833 * 18 16 15 20 20 Si 1.86805 * 119.99805 * 342.76971 * 18 16 15 21 21 H 1.48495 * 109.47252 * 89.69779 * 20 18 16 22 22 H 1.48498 * 109.46740 * 209.70004 * 20 18 16 23 23 H 1.48496 * 109.46828 * 329.69574 * 20 18 16 24 24 C 1.46930 * 118.73740 * 53.61020 * 15 14 13 25 25 C 1.54270 * 110.03356 * 184.30866 * 5 4 3 26 26 C 1.54963 * 104.15969 * 217.13565 * 25 5 4 27 27 C 1.54897 * 102.77593 * 37.89326 * 26 25 5 28 28 C 1.53876 * 110.02953 * 67.09328 * 5 4 3 29 29 H 1.08996 * 109.47010 * 299.99374 * 1 2 3 30 30 H 1.08999 * 109.47192 * 59.99936 * 1 2 3 31 31 H 1.09006 * 109.47161 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46603 * 60.00258 * 3 2 1 33 33 H 1.09007 * 109.46959 * 300.00661 * 3 2 1 34 34 H 1.09003 * 109.47040 * 63.74446 * 4 3 2 35 35 H 1.09004 * 109.47115 * 303.74672 * 4 3 2 36 36 H 0.97004 * 119.99838 * 354.71192 * 8 6 5 37 37 H 1.08993 * 109.47182 * 300.00174 * 9 8 6 38 38 H 1.09007 * 109.46854 * 59.99977 * 9 8 6 39 39 H 1.08999 * 109.46545 * 298.71038 * 12 10 9 40 40 H 1.09005 * 109.45537 * 58.66998 * 12 10 9 41 41 H 1.09002 * 109.49705 * 301.41589 * 13 12 10 42 42 H 1.09002 * 109.49573 * 181.32057 * 13 12 10 43 43 H 1.09001 * 109.58088 * 185.57904 * 14 13 12 44 44 H 1.08994 * 109.70358 * 65.21706 * 14 13 12 45 45 H 0.96997 * 119.99992 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58556 * 186.60464 * 24 15 14 47 47 H 1.08997 * 109.70214 * 66.24998 * 24 15 14 48 48 H 1.08996 * 110.48768 * 335.78694 * 25 5 4 49 49 H 1.08999 * 110.47939 * 98.42834 * 25 5 4 50 50 H 1.08999 * 110.72153 * 279.58009 * 26 25 5 51 51 H 1.08998 * 110.92156 * 156.29598 * 26 25 5 52 52 H 1.09003 * 110.48278 * 203.40435 * 27 26 25 53 53 H 1.08993 * 110.48535 * 80.75799 * 27 26 25 54 54 H 1.09001 * 110.03119 * 238.57126 * 28 5 4 55 55 H 1.08995 * 110.03309 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1576 2.5793 0.0936 6 6 3.6179 3.4601 -1.0036 7 8 3.0831 4.5132 -0.7281 8 7 3.7295 3.0775 -2.2911 9 6 3.1040 3.8750 -3.3490 10 6 3.3802 3.2268 -4.7072 11 1 4.4548 3.0998 -4.8379 12 6 2.8315 4.1214 -5.8211 13 6 3.1363 3.4899 -7.1815 14 6 2.4457 2.1255 -7.2728 15 7 2.8575 1.3091 -6.1227 16 6 3.3856 0.0593 -6.3077 17 1 4.1046 -0.3328 -5.6035 18 6 2.9968 -0.7038 -7.4001 19 7 3.7244 -1.7343 -7.7755 20 14 1.4408 -0.2681 -8.3375 21 1 1.7700 0.6856 -9.4271 22 1 0.8520 -1.5008 -8.9195 23 1 0.4635 0.3573 -7.4107 24 6 2.6923 1.8595 -4.7704 25 6 5.6934 2.4812 -0.0146 26 6 6.2123 3.5603 0.9690 27 6 5.2120 3.4593 2.1473 28 6 3.8515 3.2012 1.4674 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6887 1.8462 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 3.8614 0.7029 -0.9225 35 1 3.8529 0.5867 0.8536 36 1 4.2239 2.2742 -2.5173 37 1 2.0282 3.9221 -3.1806 38 1 3.5182 4.8832 -3.3370 39 1 1.7531 4.2277 -5.7035 40 1 3.3016 5.1031 -5.7630 41 1 4.2132 3.3606 -7.2895 42 1 2.7660 4.1390 -7.9750 43 1 2.7393 1.6286 -8.1975 44 1 1.3641 2.2593 -7.2573 45 1 3.4529 -2.2673 -8.5391 46 1 3.1486 1.1870 -4.0440 47 1 1.6316 1.9733 -4.5470 48 1 6.0349 1.4919 0.2897 49 1 6.0189 2.7023 -1.0311 50 1 6.1728 4.5493 0.5125 51 1 7.2246 3.3298 1.3009 52 1 5.1872 4.3938 2.7078 53 1 5.4755 2.6280 2.8012 54 1 3.3133 4.1405 1.3404 55 1 3.2601 2.5093 2.0671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352470218.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:44 Heat of formation + Delta-G solvation = -107.344564 kcal Electronic energy + Delta-G solvation = -31712.964436 eV Core-core repulsion = 27748.491940 eV Total energy + Delta-G solvation = -3964.472495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75994 -39.80175 -38.88475 -38.13263 -36.34251 -34.77446 -33.59933 -32.78500 -32.06979 -29.76463 -28.92785 -27.43534 -26.98703 -26.64607 -23.88180 -23.69054 -23.46595 -22.49500 -21.43311 -21.00633 -19.89545 -18.74295 -17.99502 -17.62016 -17.30140 -17.11130 -16.90914 -16.57650 -16.06695 -15.93375 -15.79234 -15.51645 -15.27234 -15.08853 -14.86399 -14.58098 -14.24693 -14.20364 -14.10940 -13.93791 -13.66276 -13.30524 -13.22278 -13.13199 -12.74601 -12.58064 -12.39329 -12.22669 -12.20166 -12.11119 -11.98874 -11.92843 -11.75985 -11.70379 -11.66962 -11.60491 -11.40436 -11.32529 -11.25768 -10.72059 -10.67794 -10.62027 -10.06369 -8.88888 -8.16532 -5.51880 1.28095 1.39580 1.48159 1.60629 2.19278 2.40655 2.70543 3.07761 3.29208 3.44881 3.57125 3.76637 3.83428 3.93827 3.99985 4.02568 4.06787 4.13889 4.23746 4.29989 4.37806 4.41375 4.43982 4.46066 4.49490 4.51384 4.59553 4.62166 4.72107 4.75704 4.79435 4.79788 4.81497 4.82298 4.91573 4.97653 5.01221 5.02657 5.06676 5.08529 5.14550 5.22206 5.24579 5.27287 5.28645 5.31353 5.44062 5.53217 5.57005 5.88531 6.13526 6.14371 6.51537 6.92406 7.19947 7.61765 8.03686 9.03375 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.003362 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.942719 B = 8326.903983 C = 9245.573782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.059 3.941 4 C -0.100 4.100 5 C -0.072 4.072 6 C 0.524 3.476 7 O -0.576 6.576 8 N -0.721 5.721 9 C 0.137 3.863 10 C -0.104 4.104 11 H 0.073 0.927 12 C -0.098 4.098 13 C -0.126 4.126 14 C 0.113 3.887 15 N -0.619 5.619 16 C -0.246 4.246 17 H 0.054 0.946 18 C -0.032 4.032 19 N -0.958 5.958 20 Si 0.947 3.053 21 H -0.272 1.272 22 H -0.313 1.313 23 H -0.266 1.266 24 C 0.155 3.845 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.408 0.592 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.029 0.971 45 H 0.261 0.739 46 H 0.054 0.946 47 H 0.023 0.977 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.052 0.948 51 H 0.087 0.913 52 H 0.069 0.931 53 H 0.082 0.918 54 H 0.067 0.933 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 12.076 18.437 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.018 4.018 4 C -0.138 4.138 5 C -0.076 4.076 6 C 0.312 3.688 7 O -0.455 6.455 8 N -0.372 5.372 9 C 0.013 3.987 10 C -0.124 4.124 11 H 0.092 0.908 12 C -0.136 4.136 13 C -0.165 4.165 14 C -0.011 4.011 15 N -0.344 5.344 16 C -0.376 4.376 17 H 0.072 0.928 18 C -0.227 4.227 19 N -0.604 5.604 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.242 1.242 23 H -0.191 1.191 24 C 0.030 3.970 25 C -0.150 4.150 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.155 4.155 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.244 0.756 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.105 0.895 52 H 0.087 0.913 53 H 0.101 0.899 54 H 0.086 0.914 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.064 12.527 18.514 22.354 hybrid contribution -0.855 -0.563 -1.168 1.554 sum -0.919 11.964 17.346 21.092 Atomic orbital electron populations 1.22902 0.79843 1.03819 1.00475 1.87830 1.21180 1.28371 1.95508 1.22627 0.94708 0.84426 0.99993 1.21600 0.92469 0.94891 1.04808 1.21410 0.97907 0.93884 0.94364 1.20816 0.77962 0.86053 0.83990 1.90630 1.46022 1.25420 1.83475 1.46086 1.55428 1.29621 1.06099 1.21275 0.97573 0.94646 0.85195 1.21736 1.01030 0.95895 0.93728 0.90818 1.21364 1.01188 0.98216 0.92844 1.21897 1.00632 0.95702 0.98250 1.21477 0.96549 0.92713 0.90387 1.44447 1.74081 1.14165 1.01668 1.18860 1.17222 0.91666 1.09821 0.92778 1.25928 1.00665 0.96065 1.00019 1.69924 1.39858 1.22068 1.28582 0.85929 0.81986 0.75531 0.78868 1.19870 1.24206 1.19099 1.21045 0.96977 0.93361 0.85573 1.22529 0.90195 1.01592 1.00636 1.22507 0.99787 0.98033 0.95789 1.22339 0.93330 1.02368 0.97433 1.22292 0.99106 1.01349 0.92725 0.92617 0.94509 0.88372 0.92322 0.95016 0.90788 0.88176 0.75617 0.92249 0.90972 0.91667 0.89781 0.92550 0.89974 0.93415 0.95349 0.93001 0.92738 0.95899 0.88348 0.91389 0.92873 0.89475 0.91266 0.89898 0.91437 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -10.67 10.70 -148.98 -1.59 -12.27 16 3 C 0.06 1.37 5.40 71.98 0.39 1.76 16 4 C -0.10 -1.98 4.15 30.59 0.13 -1.86 16 5 C -0.07 -1.41 0.54 -52.20 -0.03 -1.44 16 6 C 0.52 13.23 4.99 87.65 0.44 13.67 16 7 O -0.58 -18.22 15.22 -3.04 -0.05 -18.26 16 8 N -0.72 -17.52 4.98 -463.05 -2.31 -19.82 16 9 C 0.14 3.46 5.07 86.38 0.44 3.90 16 10 C -0.10 -2.93 2.38 -10.71 -0.03 -2.96 16 11 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 12 C -0.10 -2.57 5.17 30.62 0.16 -2.41 16 13 C -0.13 -3.94 6.08 30.68 0.19 -3.75 16 14 C 0.11 4.67 4.19 86.36 0.36 5.03 16 15 N -0.62 -28.25 2.74 -699.07 -1.92 -30.17 16 16 C -0.25 -13.70 10.04 84.03 0.84 -12.85 16 17 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 18 C -0.03 -1.86 5.27 84.86 0.45 -1.41 16 19 N -0.96 -59.90 13.97 21.65 0.30 -59.59 16 20 Si 0.95 46.72 24.30 68.60 1.67 48.39 16 21 H -0.27 -12.60 6.54 99.48 0.65 -11.95 16 22 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 23 H -0.27 -12.70 6.67 99.48 0.66 -12.04 16 24 C 0.16 5.68 5.60 86.36 0.48 6.17 16 25 C -0.11 -1.80 5.89 31.70 0.19 -1.61 16 26 C -0.12 -1.85 6.91 31.91 0.22 -1.63 16 27 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 28 C -0.12 -2.15 5.50 31.32 0.17 -1.98 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.25 6.86 -2.39 -0.02 1.23 16 33 H 0.03 0.84 7.24 -2.38 -0.02 0.83 16 34 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 9.40 7.09 -92.71 -0.66 8.74 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 2.19 4.56 -2.39 -0.01 2.18 16 44 H 0.03 1.15 7.01 -2.39 -0.02 1.13 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.05 2.02 7.13 -2.39 -0.02 2.00 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.10 1.28 7.85 -2.39 -0.02 1.26 16 49 H 0.07 1.16 7.58 -2.39 -0.02 1.14 16 50 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.07 1.58 6.40 -2.39 -0.02 1.56 16 55 H 0.08 1.28 6.84 -2.39 -0.02 1.26 16 Total: -1.00 -70.40 410.15 2.06 -68.34 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.09 Total: 24.44 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.86 Total: -1.05 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -3.92 Total: -109.58 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.64 Total: -30.53 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Total: -70.40 2.06 -68.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352470218.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.006 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds