Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 114.00086 * 2 1 4 4 H 1.08994 * 109.46907 * 29.99940 * 3 2 1 5 5 C 1.53007 * 109.46467 * 270.00032 * 3 2 1 6 6 C 1.53002 * 109.46558 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47188 * 59.99732 * 6 5 3 8 8 C 1.52997 * 109.47533 * 299.99697 * 7 6 5 9 9 H 1.08994 * 109.47461 * 300.00520 * 8 7 6 10 10 C 1.53001 * 109.47026 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47106 * 65.00637 * 10 8 7 12 12 O 1.21281 * 120.00281 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99604 * 179.97438 * 11 10 8 14 14 C 1.46505 * 119.99907 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47221 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.49257 * 54.94351 * 15 14 13 17 17 C 1.53047 * 109.49521 * 175.00264 * 15 14 13 18 18 C 1.53041 * 109.53646 * 181.32050 * 17 15 14 19 19 C 1.53194 * 109.31230 * 298.63518 * 18 17 15 20 20 N 1.46922 * 108.77635 * 54.63187 * 19 18 17 21 21 C 1.36940 * 120.63010 * 126.41254 * 20 19 18 22 22 H 1.07992 * 120.00312 * 207.67322 * 21 20 19 23 23 C 1.38817 * 119.99666 * 27.67857 * 21 20 19 24 24 N 1.31622 * 119.99886 * 17.35296 * 23 21 20 25 25 Si 1.86804 * 120.00022 * 197.35503 * 23 21 20 26 26 H 1.48503 * 109.46990 * 89.99888 * 25 23 21 27 27 H 1.48502 * 109.47031 * 209.99854 * 25 23 21 28 28 H 1.48497 * 109.46680 * 330.00133 * 25 23 21 29 29 C 1.46918 * 118.74308 * 306.39616 * 20 19 18 30 30 C 1.52993 * 109.47228 * 150.00194 * 3 2 1 31 31 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46869 * 300.00157 * 1 2 3 33 33 H 1.08993 * 109.47000 * 59.99817 * 1 2 3 34 34 H 1.08994 * 109.47482 * 299.99556 * 5 3 2 35 35 H 1.08996 * 109.47548 * 60.00551 * 5 3 2 36 36 H 1.09002 * 109.47041 * 299.99768 * 6 5 3 37 37 H 1.08998 * 109.47367 * 180.02562 * 6 5 3 38 38 H 1.09004 * 109.46809 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.46840 * 60.00772 * 7 6 5 40 40 H 1.09000 * 109.46594 * 185.00870 * 10 8 7 41 41 H 1.09002 * 109.47275 * 304.99648 * 10 8 7 42 42 H 0.96997 * 120.00464 * 359.97438 * 13 11 10 43 43 H 1.08996 * 109.47002 * 300.00175 * 14 13 11 44 44 H 1.09003 * 109.46604 * 59.99943 * 14 13 11 45 45 H 1.09002 * 109.46094 * 301.33562 * 17 15 14 46 46 H 1.08996 * 109.46301 * 61.31271 * 17 15 14 47 47 H 1.09000 * 109.49623 * 58.58728 * 18 17 15 48 48 H 1.08998 * 109.49647 * 178.67855 * 18 17 15 49 49 H 1.08996 * 109.58423 * 174.42392 * 19 18 17 50 50 H 1.09001 * 109.58057 * 294.84892 * 19 18 17 51 51 H 0.97008 * 119.99525 * 179.97438 * 24 23 21 52 52 H 1.09004 * 109.58812 * 293.82139 * 29 20 19 53 53 H 1.09000 * 109.59340 * 173.39672 * 29 20 19 54 54 H 1.08996 * 109.47546 * 300.00154 * 30 3 2 55 55 H 1.09002 * 109.47312 * 59.99717 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 2.8406 3.1687 -1.4426 7 6 4.1893 3.1259 -0.7216 8 6 3.9819 2.6602 0.7210 9 1 3.3170 3.3543 1.2349 10 6 5.3308 2.6168 1.4418 11 6 5.8877 4.0129 1.5499 12 8 5.2671 4.9503 1.0948 13 7 7.0754 4.2198 2.1524 14 6 7.6171 5.5770 2.2570 15 6 8.9653 5.5337 2.9791 16 1 9.6300 4.8382 2.4669 17 6 9.5898 6.9310 2.9790 18 6 10.9534 6.8822 3.6721 19 6 10.7672 6.4359 5.1257 20 7 10.0374 5.1608 5.1391 21 6 10.5413 4.0754 5.8050 22 1 10.2908 3.0772 5.4780 23 6 11.3740 4.2585 6.9005 24 7 11.4125 5.4243 7.5102 25 14 12.4399 2.8504 7.5092 26 1 13.7535 2.8892 6.8177 27 1 12.6471 2.9836 8.9736 28 1 11.7663 1.5590 7.2200 29 6 8.7566 5.0722 4.4248 30 6 3.3589 1.2633 0.7212 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.8829 1.0774 -1.9564 35 1 1.2569 1.8014 -1.9564 36 1 2.1757 3.8629 -0.9287 37 1 2.9880 3.5009 -2.4703 38 1 4.6333 4.1215 -0.7220 39 1 4.8542 2.4319 -1.2356 40 1 5.1959 2.2010 2.4403 41 1 6.0238 1.9917 0.8786 42 1 7.5716 3.4702 2.5167 43 1 7.7525 5.9921 1.2583 44 1 6.9239 6.2024 2.8196 45 1 9.7168 7.2720 1.9515 46 1 8.9361 7.6210 3.5124 47 1 11.5997 6.1737 3.1539 48 1 11.4079 7.8726 3.6509 49 1 11.7420 6.3040 5.5951 50 1 10.1965 7.1892 5.6689 51 1 11.9942 5.5521 8.2760 52 1 8.0220 5.7143 4.9108 53 1 8.4047 4.0406 4.4318 54 1 3.2113 0.9314 1.7488 55 1 4.0242 0.5693 0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359580769.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = -117.711006 kcal Electronic energy + Delta-G solvation = -29989.296814 eV Core-core repulsion = 26024.374796 eV Total energy + Delta-G solvation = -3964.922018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13546 -40.02284 -39.28475 -37.48949 -36.15963 -34.63761 -33.44773 -32.29408 -31.87970 -31.04324 -28.52070 -27.30820 -27.22931 -26.24255 -23.83177 -23.34803 -22.93722 -22.21663 -21.29490 -20.79200 -20.46409 -18.68308 -17.87198 -17.48488 -16.91127 -16.78725 -16.55129 -16.45068 -16.03166 -15.87271 -15.73847 -15.43088 -15.05592 -14.82430 -14.60317 -14.50546 -14.22432 -14.05557 -13.83979 -13.70015 -13.64936 -13.19928 -13.00687 -12.98036 -12.85512 -12.70155 -12.48904 -12.43523 -12.24700 -11.94839 -11.93163 -11.92342 -11.81441 -11.57508 -11.53242 -11.35734 -11.31286 -11.25539 -11.08713 -10.60014 -10.52413 -10.36829 -9.96400 -8.67591 -7.85853 -5.31372 1.47959 1.49558 1.57891 1.74974 2.29323 2.51946 2.83643 3.28667 3.61428 3.67043 3.76419 3.87585 4.00839 4.03184 4.07961 4.11500 4.13355 4.24247 4.33385 4.41406 4.50619 4.52128 4.52868 4.54719 4.59935 4.63947 4.67876 4.72976 4.75911 4.79108 4.86650 4.88036 4.90008 4.93554 5.01840 5.06432 5.08770 5.11163 5.23021 5.25807 5.26948 5.33623 5.34975 5.41202 5.46756 5.55592 5.56664 5.61264 5.68129 5.78833 6.30173 6.39786 6.64762 7.15725 7.34713 7.87402 8.39377 9.20332 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.002039 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.889317 B =13726.900163 C =15095.411080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.087 3.913 4 H 0.060 0.940 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.061 4.061 9 H 0.063 0.937 10 C -0.133 4.133 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.723 5.723 14 C 0.139 3.861 15 C -0.100 4.100 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.258 4.258 22 H 0.072 0.928 23 C -0.055 4.055 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.265 1.265 29 C 0.153 3.847 30 C -0.106 4.106 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.411 0.589 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.051 0.949 50 H -0.009 1.009 51 H 0.248 0.752 52 H 0.004 0.996 53 H 0.059 0.941 54 H 0.072 0.928 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 -7.551 -18.529 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.030 3.970 4 H 0.078 0.922 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.080 4.080 9 H 0.081 0.919 10 C -0.173 4.173 11 C 0.297 3.703 12 O -0.458 6.458 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.120 4.120 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.250 4.250 24 N -0.583 5.583 25 Si 0.795 3.205 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.190 1.190 29 C 0.027 3.973 30 C -0.144 4.144 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.247 0.753 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.009 0.991 51 H 0.057 0.943 52 H 0.022 0.978 53 H 0.077 0.923 54 H 0.091 0.909 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.489 -7.025 -18.698 26.549 hybrid contribution 0.726 -0.306 1.161 1.403 sum -16.763 -7.331 -17.537 25.344 Atomic orbital electron populations 1.22938 0.80027 1.03629 1.00542 1.87870 1.20975 1.28558 1.95222 1.22173 0.94980 0.83978 0.95874 0.92171 1.21985 1.01388 0.97064 0.96739 1.21425 0.96528 0.96178 1.00811 1.21695 0.97528 1.01891 0.94615 1.20740 0.94958 0.96062 0.96251 0.91870 1.21771 0.98267 0.92804 1.04438 1.21185 0.80318 0.92304 0.76448 1.90643 1.60017 1.45962 1.49225 1.46110 1.21703 1.10318 1.59332 1.21195 0.93710 0.83748 0.99914 1.21706 0.95357 0.98560 0.96367 0.90501 1.21342 0.95959 0.95580 1.00689 1.22002 0.97375 1.00488 0.97072 1.20629 0.96113 0.85708 0.92861 1.44319 1.19875 1.09681 1.59365 1.19552 1.25377 0.87425 1.06504 0.91010 1.25823 1.03548 0.99176 0.96463 1.70209 1.40887 1.25390 1.21830 0.85273 0.79144 0.79659 0.76424 1.21331 1.22584 1.18968 1.21025 0.86864 0.98619 0.90782 1.21575 0.95193 0.96512 1.01111 0.88609 0.93562 0.93404 0.91339 0.91526 0.92474 0.91196 0.91914 0.91660 0.87071 0.86661 0.75294 0.91269 0.92938 0.90257 0.92829 0.92791 0.91364 0.93030 0.99065 0.94263 0.97839 0.92284 0.90899 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.22 10.35 -148.98 -1.54 -8.76 16 3 C 0.09 1.39 2.61 30.59 0.08 1.47 16 4 H 0.06 0.94 7.79 -2.39 -0.02 0.92 16 5 C -0.13 -1.97 5.54 30.60 0.17 -1.80 16 6 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 7 C -0.12 -2.17 4.94 30.59 0.15 -2.02 16 8 C -0.06 -1.06 1.84 -10.81 -0.02 -1.08 16 9 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 10 C -0.13 -2.17 5.17 29.85 0.15 -2.01 16 11 C 0.51 12.06 7.55 87.66 0.66 12.72 16 12 O -0.58 -17.75 13.97 -3.03 -0.04 -17.79 16 13 N -0.72 -16.73 5.33 -463.06 -2.47 -19.20 16 14 C 0.14 3.67 5.07 86.38 0.44 4.10 16 15 C -0.10 -3.00 2.37 -10.72 -0.03 -3.03 16 16 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 18 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 19 C 0.17 8.24 5.31 86.36 0.46 8.70 16 20 N -0.61 -29.63 2.99 -699.12 -2.09 -31.72 16 21 C -0.26 -13.75 9.59 84.03 0.81 -12.94 16 22 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 23 C -0.05 -3.03 4.91 84.86 0.42 -2.61 16 24 N -0.94 -55.32 11.19 21.65 0.24 -55.08 16 25 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 26 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 C 0.15 5.92 5.60 86.36 0.48 6.40 16 30 C -0.11 -1.63 4.85 30.58 0.15 -1.48 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.49 8.09 -2.38 -0.02 0.47 16 33 H 0.05 0.48 7.87 -2.39 -0.02 0.46 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.47 5.95 -2.38 -0.01 1.46 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.41 8.24 7.71 -92.71 -0.71 7.53 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 50 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 51 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 52 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 53 H 0.06 2.14 7.14 -2.39 -0.02 2.13 16 54 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 55 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -67.47 417.23 1.92 -65.54 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.12 Total: 21.84 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.67 Total: -0.96 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.32 Total: -106.00 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.58 Total: -26.55 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.47 1.92 -65.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359580769.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.166 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds