Wall clock time and date at job start Tue Mar 31 2020 22:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99935 * 2 1 4 4 H 1.09005 * 109.47206 * 30.00247 * 3 2 1 5 5 C 1.52994 * 109.47417 * 270.00473 * 3 2 1 6 6 C 1.53004 * 109.47153 * 299.99711 * 5 3 2 7 7 C 1.53000 * 109.47285 * 300.00407 * 6 5 3 8 8 C 1.53001 * 109.47166 * 59.99481 * 7 6 5 9 9 H 1.09001 * 109.47429 * 60.00330 * 8 7 6 10 10 C 1.52999 * 109.46927 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47198 * 294.99582 * 10 8 7 12 12 O 1.21281 * 119.99742 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00227 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00167 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46816 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.52482 * 55.08475 * 15 14 13 17 17 C 1.53044 * 109.49501 * 175.16135 * 15 14 13 18 18 C 1.53036 * 109.54093 * 181.31390 * 17 15 14 19 19 C 1.53190 * 109.31442 * 298.63833 * 18 17 15 20 20 N 1.46924 * 108.77777 * 54.63251 * 19 18 17 21 21 C 1.36936 * 120.63146 * 126.36923 * 20 19 18 22 22 H 1.08000 * 119.99436 * 207.98323 * 21 20 19 23 23 C 1.38806 * 120.00041 * 27.98674 * 21 20 19 24 24 N 1.31618 * 120.00102 * 17.50091 * 23 21 20 25 25 Si 1.86801 * 119.99906 * 197.50298 * 23 21 20 26 26 H 1.48497 * 109.47584 * 94.06409 * 25 23 21 27 27 H 1.48499 * 109.47074 * 214.06913 * 25 23 21 28 28 H 1.48502 * 109.47138 * 334.06468 * 25 23 21 29 29 C 1.46929 * 118.73810 * 306.39220 * 20 19 18 30 30 C 1.52998 * 109.47021 * 300.00171 * 8 7 6 31 31 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46861 * 299.99686 * 1 2 3 33 33 H 1.08999 * 109.47278 * 59.99383 * 1 2 3 34 34 H 1.08994 * 109.47393 * 59.99871 * 5 3 2 35 35 H 1.09005 * 109.47186 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46733 * 59.99723 * 6 5 3 37 37 H 1.08999 * 109.47401 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.47127 * 299.99494 * 7 6 5 39 39 H 1.08992 * 109.47240 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.46902 * 174.99990 * 10 8 7 41 41 H 1.08997 * 109.47383 * 55.00266 * 10 8 7 42 42 H 0.97004 * 119.99551 * 0.02562 * 13 11 10 43 43 H 1.08996 * 109.46735 * 60.00100 * 14 13 11 44 44 H 1.08998 * 109.46809 * 300.00258 * 14 13 11 45 45 H 1.08997 * 109.45974 * 301.33973 * 17 15 14 46 46 H 1.09005 * 109.45565 * 61.29451 * 17 15 14 47 47 H 1.08997 * 109.50008 * 178.68298 * 18 17 15 48 48 H 1.09003 * 109.52265 * 58.60569 * 18 17 15 49 49 H 1.08997 * 109.58584 * 294.84763 * 19 18 17 50 50 H 1.09001 * 109.58852 * 174.41624 * 19 18 17 51 51 H 0.97003 * 119.99965 * 180.02562 * 24 23 21 52 52 H 1.08998 * 109.58941 * 293.82452 * 29 20 19 53 53 H 1.08997 * 109.58781 * 173.39605 * 29 20 19 54 54 H 1.09010 * 109.47274 * 180.02562 * 30 8 7 55 55 H 1.09006 * 109.47554 * 299.99728 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7552 -1.4426 8 6 4.2927 0.2892 -0.0001 9 1 3.8494 -0.7065 -0.0001 10 6 5.6413 0.2476 0.7213 11 6 6.5186 -0.8003 0.0861 12 8 6.1059 -1.4495 -0.8515 13 7 7.7617 -1.0160 0.5600 14 6 8.6147 -2.0343 -0.0578 15 6 9.9628 -2.0769 0.6644 16 1 9.8001 -2.2369 1.7302 17 6 10.8090 -3.2202 0.0996 18 6 12.1448 -3.2844 0.8437 19 6 12.9050 -1.9710 0.6343 20 7 12.0409 -0.8544 1.0407 21 6 12.4783 0.0710 1.9504 22 1 11.7678 0.5906 2.5762 23 6 13.8347 0.3413 2.0680 24 7 14.6617 -0.0104 1.1064 25 14 14.4864 1.2042 3.5913 26 1 14.9440 0.1915 4.5763 27 1 15.6258 2.0791 3.2151 28 1 13.4075 2.0280 4.1933 29 6 10.6984 -0.7498 0.4530 30 6 3.3589 1.2632 0.7212 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.2568 1.8015 -1.9562 35 1 2.6613 2.7671 -1.4424 36 1 2.7081 -0.1983 -2.1638 37 1 3.2995 1.1297 -3.1913 38 1 4.9435 1.7510 -1.4425 39 1 5.1652 0.0611 -1.9562 40 1 5.4841 0.0019 1.7715 41 1 6.1247 1.2215 0.6444 42 1 8.0916 -0.4970 1.3102 43 1 8.7723 -1.7879 -1.1078 44 1 8.1312 -3.0082 0.0183 45 1 10.2768 -4.1629 0.2267 46 1 10.9921 -3.0468 -0.9609 47 1 12.7373 -4.1134 0.4569 48 1 11.9621 -3.4333 1.9080 49 1 13.1682 -1.8650 -0.4181 50 1 13.8103 -1.9721 1.2414 51 1 15.6096 0.1781 1.1888 52 1 10.7817 -0.5443 -0.6142 53 1 10.1478 0.0548 0.9403 54 1 3.2115 0.9315 1.7491 55 1 3.8022 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359580770.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:13 Heat of formation + Delta-G solvation = -115.916123 kcal Electronic energy + Delta-G solvation = -30251.281965 eV Core-core repulsion = 26286.437779 eV Total energy + Delta-G solvation = -3964.844186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13327 -40.06986 -39.28195 -37.13321 -36.13871 -34.63740 -33.37180 -32.29452 -31.87273 -31.11999 -28.51360 -27.31545 -27.22346 -26.22877 -23.83372 -23.44260 -22.93283 -22.21262 -21.26972 -20.52839 -20.44986 -18.67758 -17.89951 -17.19702 -16.86105 -16.80107 -16.59485 -16.49910 -16.15255 -15.85184 -15.62613 -15.52248 -15.06888 -14.59632 -14.57241 -14.49674 -14.26067 -14.00612 -13.74026 -13.63430 -13.41863 -13.27988 -13.00861 -12.97083 -12.86077 -12.67951 -12.55668 -12.44787 -12.24214 -12.12475 -11.94214 -11.85915 -11.81745 -11.57917 -11.43003 -11.32934 -11.17259 -11.14523 -11.08866 -10.53083 -10.47370 -10.31561 -9.96288 -8.67351 -7.85699 -5.31480 1.48044 1.49718 1.58434 1.76496 2.33780 2.52155 2.97681 3.28868 3.61135 3.73852 3.79270 3.89655 4.00292 4.02430 4.02961 4.09586 4.22953 4.32210 4.40801 4.43494 4.50284 4.55117 4.59207 4.59833 4.62559 4.66905 4.73427 4.76193 4.80675 4.86119 4.88117 4.89969 4.90376 4.93964 5.01518 5.01947 5.10323 5.11005 5.24377 5.31809 5.33939 5.35778 5.39756 5.41735 5.49446 5.56858 5.62279 5.67387 5.68394 5.78171 6.39957 6.40880 6.65891 7.15769 7.36708 7.87224 8.39735 9.20657 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.002076 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.708751 B =13482.424018 C =14352.244402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.085 3.915 4 H 0.077 0.923 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.059 4.059 9 H 0.055 0.945 10 C -0.134 4.134 11 C 0.507 3.493 12 O -0.580 6.580 13 N -0.723 5.723 14 C 0.139 3.861 15 C -0.099 4.099 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.072 0.928 23 C -0.055 4.055 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.264 1.264 29 C 0.153 3.847 30 C -0.109 4.109 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.411 0.589 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.054 0.946 49 H -0.008 1.008 50 H 0.051 0.949 51 H 0.248 0.752 52 H 0.004 0.996 53 H 0.059 0.941 54 H 0.075 0.925 55 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.747 1.954 -0.066 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.028 3.972 4 H 0.095 0.905 5 C -0.175 4.175 6 C -0.147 4.147 7 C -0.156 4.156 8 C -0.078 4.078 9 H 0.074 0.926 10 C -0.174 4.174 11 C 0.295 3.705 12 O -0.461 6.461 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.119 4.119 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.250 4.250 24 N -0.583 5.583 25 Si 0.795 3.205 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.188 1.188 29 C 0.028 3.972 30 C -0.146 4.146 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.247 0.753 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.010 0.990 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.021 0.979 53 H 0.078 0.922 54 H 0.094 0.906 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.761 1.376 -0.735 26.806 hybrid contribution 1.036 0.675 0.544 1.351 sum -25.725 2.051 -0.191 25.807 Atomic orbital electron populations 1.22896 0.80490 1.03162 1.00545 1.87953 1.20495 1.28805 1.95127 1.22242 0.94999 0.84422 0.95571 0.90471 1.22024 0.99820 0.99563 0.96053 1.21334 0.95405 0.99410 0.98569 1.21656 0.97322 1.00810 0.95782 1.20693 0.93144 0.99587 0.94426 0.92647 1.21834 0.95212 0.98539 1.01768 1.21308 0.81925 0.84262 0.83004 1.90650 1.74216 1.51003 1.30188 1.46112 1.14722 1.40027 1.36624 1.21185 0.89335 0.91622 0.96460 1.21701 0.93045 0.96959 1.00224 0.90491 1.21344 0.95318 0.97877 0.99080 1.21997 0.96995 0.97863 1.00033 1.20622 0.93400 0.85647 0.95612 1.44320 1.13015 1.26851 1.49046 1.19556 0.91533 1.16548 1.11233 0.90998 1.25831 0.97797 1.01038 1.00323 1.70210 1.03015 1.52640 1.32449 0.85255 0.77764 0.77884 0.79569 1.21456 1.22571 1.18815 1.21018 0.85865 0.95486 0.94863 1.21731 0.93321 1.00480 0.99077 0.89581 0.93002 0.93634 0.91664 0.89772 0.93506 0.92373 0.91673 0.93054 0.86770 0.86906 0.75273 0.93013 0.91541 0.90346 0.92846 0.91350 0.92763 0.99037 0.93062 0.94256 0.97854 0.92229 0.90624 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.50 9.00 -148.98 -1.34 -8.84 16 3 C 0.09 1.21 2.92 30.59 0.09 1.30 16 4 H 0.08 0.80 7.79 -2.38 -0.02 0.78 16 5 C -0.14 -1.96 5.63 30.59 0.17 -1.78 16 6 C -0.11 -2.15 5.78 30.60 0.18 -1.97 16 7 C -0.12 -2.54 4.94 30.59 0.15 -2.39 16 8 C -0.06 -1.16 1.69 -10.79 -0.02 -1.18 16 9 H 0.05 1.44 7.50 -2.39 -0.02 1.42 16 10 C -0.13 -2.36 5.17 29.85 0.15 -2.21 16 11 C 0.51 13.06 7.55 87.66 0.66 13.72 16 12 O -0.58 -19.58 13.96 -3.03 -0.04 -19.63 16 13 N -0.72 -17.78 5.33 -463.07 -2.47 -20.25 16 14 C 0.14 3.86 5.07 86.38 0.44 4.30 16 15 C -0.10 -3.07 2.38 -10.71 -0.03 -3.10 16 16 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.10 -3.06 5.17 30.62 0.16 -2.90 16 18 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 19 C 0.17 8.32 5.31 86.36 0.46 8.78 16 20 N -0.61 -29.83 2.99 -699.11 -2.09 -31.93 16 21 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16 22 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 23 C -0.05 -3.02 4.90 84.86 0.42 -2.60 16 24 N -0.94 -55.46 11.22 21.65 0.24 -55.21 16 25 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 29 C 0.15 6.02 5.60 86.36 0.48 6.51 16 30 C -0.11 -1.50 4.94 30.59 0.15 -1.35 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 33 H 0.05 0.48 7.87 -2.39 -0.02 0.46 16 34 H 0.06 0.85 7.87 -2.39 -0.02 0.83 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 1.11 7.68 -2.39 -0.02 1.09 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.05 1.45 5.95 -2.39 -0.01 1.43 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.41 8.66 7.70 -92.71 -0.71 7.95 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 49 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 51 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 52 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 53 H 0.06 2.19 7.13 -2.39 -0.02 2.17 16 54 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 55 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -69.85 415.19 2.14 -67.71 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.13 Total: 22.91 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.69 Total: -0.89 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.32 Total: -107.39 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.38 Total: -28.47 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.85 2.14 -67.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359580770.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.205 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds