Wall clock time and date at job start Tue Mar 31 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99930 * 2 1 4 4 H 1.08999 * 109.47237 * 30.00035 * 3 2 1 5 5 C 1.53001 * 109.47320 * 270.00192 * 3 2 1 6 6 C 1.52993 * 109.47129 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47260 * 59.99829 * 6 5 3 8 8 C 1.52993 * 109.47025 * 299.99721 * 7 6 5 9 9 H 1.09001 * 109.47760 * 300.00133 * 8 7 6 10 10 C 1.53007 * 109.47001 * 180.02562 * 8 7 6 11 11 C 1.50693 * 109.47219 * 65.00057 * 10 8 7 12 12 O 1.21283 * 120.00303 * 0.02562 * 11 10 8 13 13 N 1.34783 * 119.99948 * 179.97438 * 11 10 8 14 14 C 1.46492 * 119.99815 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47317 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.49776 * 305.00807 * 15 14 13 17 17 C 1.53036 * 109.50174 * 184.93579 * 15 14 13 18 18 C 1.53041 * 109.53765 * 178.68782 * 17 15 14 19 19 C 1.53189 * 109.31626 * 61.36419 * 18 17 15 20 20 N 1.46925 * 108.77514 * 305.36753 * 19 18 17 21 21 C 1.36942 * 120.62988 * 233.60927 * 20 19 18 22 22 H 1.08005 * 119.99663 * 152.79213 * 21 20 19 23 23 C 1.38809 * 120.00105 * 332.79045 * 21 20 19 24 24 N 1.31613 * 120.00315 * 159.75466 * 23 21 20 25 25 Si 1.86800 * 119.99694 * 339.75797 * 23 21 20 26 26 H 1.48500 * 109.47495 * 94.89651 * 25 23 21 27 27 H 1.48510 * 109.47023 * 214.89444 * 25 23 21 28 28 H 1.48502 * 109.47427 * 334.89382 * 25 23 21 29 29 C 1.46937 * 118.76630 * 53.58286 * 20 19 18 30 30 C 1.52999 * 109.47034 * 150.00042 * 3 2 1 31 31 H 1.08996 * 109.46740 * 60.00153 * 1 2 3 32 32 H 1.09002 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46816 * 299.99840 * 1 2 3 34 34 H 1.08999 * 109.46848 * 59.99618 * 5 3 2 35 35 H 1.09009 * 109.46722 * 300.00046 * 5 3 2 36 36 H 1.08999 * 109.47202 * 299.99705 * 6 5 3 37 37 H 1.09005 * 109.47076 * 179.97438 * 6 5 3 38 38 H 1.09006 * 109.47011 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47114 * 59.99822 * 7 6 5 40 40 H 1.08998 * 109.46770 * 304.99667 * 10 8 7 41 41 H 1.09009 * 109.46859 * 185.00322 * 10 8 7 42 42 H 0.97002 * 119.99489 * 359.97438 * 13 11 10 43 43 H 1.08999 * 109.47403 * 299.99917 * 14 13 11 44 44 H 1.09011 * 109.47352 * 60.00409 * 14 13 11 45 45 H 1.09000 * 109.46097 * 298.70525 * 17 15 14 46 46 H 1.08997 * 109.46274 * 58.66495 * 17 15 14 47 47 H 1.08997 * 109.49757 * 181.31961 * 18 17 15 48 48 H 1.09006 * 109.49809 * 301.38005 * 18 17 15 49 49 H 1.08998 * 109.58713 * 65.15223 * 19 18 17 50 50 H 1.08995 * 109.58816 * 185.57500 * 19 18 17 51 51 H 0.97004 * 120.00301 * 180.02562 * 24 23 21 52 52 H 1.09000 * 109.61297 * 186.64080 * 29 20 19 53 53 H 1.08999 * 109.55676 * 66.22030 * 29 20 19 54 54 H 1.08999 * 109.47114 * 59.99917 * 30 3 2 55 55 H 1.09005 * 109.47099 * 300.00109 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4424 7 6 4.1893 3.1260 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2351 10 6 5.3305 2.6180 1.4423 11 6 5.8863 4.0145 1.5505 12 8 5.2646 4.9515 1.0959 13 7 7.0737 4.2225 2.1533 14 6 7.6141 5.5801 2.2579 15 6 8.9622 5.5382 2.9804 16 1 8.8433 5.0424 3.9438 17 6 9.4691 6.9654 3.1994 18 6 10.8016 6.9256 3.9510 19 6 11.8351 6.1691 3.1105 20 7 11.2929 4.8460 2.7729 21 6 12.0027 3.7089 3.0534 22 1 11.4840 2.7772 3.2252 23 6 13.3886 3.7537 3.1167 24 7 14.0489 2.8121 3.7566 25 14 14.3164 5.1506 2.2937 26 1 14.5880 6.2186 3.2890 27 1 15.6017 4.6400 1.7525 28 1 13.4974 5.7036 1.1852 29 6 9.9745 4.7652 2.1292 30 6 3.3589 1.2632 0.7212 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.2568 1.8014 -1.9563 35 1 2.8830 1.0774 -1.9563 36 1 2.1756 3.8630 -0.9285 37 1 2.9887 3.5006 -2.4701 38 1 4.6332 4.1216 -0.7218 39 1 4.8542 2.4319 -1.2353 40 1 6.0242 1.9935 0.8794 41 1 5.1957 2.2022 2.4409 42 1 7.5703 3.4733 2.5179 43 1 7.7496 5.9953 1.2592 44 1 6.9203 6.2051 2.8203 45 1 9.6108 7.4525 2.2346 46 1 8.7388 7.5245 3.7843 47 1 11.1505 7.9431 4.1271 48 1 10.6659 6.4172 4.9056 49 1 12.0391 6.7247 2.1952 50 1 12.7557 6.0519 3.6820 51 1 15.0174 2.8436 3.8012 52 1 9.6676 3.7220 2.0537 53 1 10.0269 5.2058 1.1337 54 1 4.0242 0.5693 0.2074 55 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359580771.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:18 Heat of formation + Delta-G solvation = -114.042723 kcal Electronic energy + Delta-G solvation = -30084.746018 eV Core-core repulsion = 26119.983068 eV Total energy + Delta-G solvation = -3964.762949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14507 -40.07144 -39.44236 -37.50490 -36.22754 -34.68054 -33.48088 -32.78400 -32.08384 -31.05275 -28.63854 -27.31727 -27.23371 -26.43034 -23.68752 -23.35145 -23.20952 -22.35342 -21.31934 -20.81179 -20.57652 -18.74983 -17.90652 -17.49366 -17.23566 -16.84111 -16.71732 -16.46291 -16.03689 -15.94965 -15.68370 -15.50228 -15.11931 -14.95439 -14.78275 -14.61944 -14.30267 -14.11716 -14.02698 -13.77676 -13.72481 -13.28557 -13.24062 -13.14081 -12.97754 -12.70275 -12.55929 -12.42643 -12.15739 -12.09813 -11.93446 -11.92318 -11.69925 -11.56706 -11.51548 -11.36617 -11.32515 -11.27689 -11.24503 -10.67242 -10.60020 -10.36884 -9.96869 -8.91743 -8.15632 -5.46614 1.29419 1.41106 1.49308 1.74324 2.29065 2.41840 2.83882 3.06390 3.32745 3.66785 3.75833 3.86043 3.88058 3.97876 4.03561 4.11329 4.11913 4.23197 4.26070 4.32791 4.40079 4.50408 4.52141 4.53251 4.55092 4.56190 4.65108 4.67088 4.72131 4.75292 4.81171 4.83922 4.85772 4.87127 4.88587 4.99576 5.05934 5.08212 5.08478 5.16818 5.23733 5.26523 5.27081 5.29971 5.33941 5.44506 5.54678 5.55772 5.61972 5.87495 6.13638 6.30792 6.62997 6.92772 7.33556 7.63765 8.04734 9.03877 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.002008 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.984554 B =13941.600811 C =14615.740351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.088 3.912 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.122 4.122 8 C -0.059 4.059 9 H 0.068 0.932 10 C -0.135 4.135 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.725 5.725 14 C 0.138 3.862 15 C -0.104 4.104 16 H 0.073 0.927 17 C -0.099 4.099 18 C -0.127 4.127 19 C 0.115 3.885 20 N -0.620 5.620 21 C -0.243 4.243 22 H 0.058 0.942 23 C -0.037 4.037 24 N -0.956 5.956 25 Si 0.944 3.056 26 H -0.278 1.278 27 H -0.314 1.314 28 H -0.262 1.262 29 C 0.153 3.847 30 C -0.107 4.107 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.410 0.590 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.030 0.970 50 H 0.045 0.955 51 H 0.260 0.740 52 H 0.059 0.941 53 H 0.026 0.974 54 H 0.071 0.929 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.455 1.235 -6.349 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.031 3.969 4 H 0.082 0.918 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.078 4.078 9 H 0.086 0.914 10 C -0.175 4.175 11 C 0.299 3.701 12 O -0.457 6.457 13 N -0.377 5.377 14 C 0.014 3.986 15 C -0.124 4.124 16 H 0.091 0.909 17 C -0.137 4.137 18 C -0.166 4.166 19 C -0.009 4.009 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.076 0.924 23 C -0.232 4.232 24 N -0.603 5.603 25 Si 0.774 3.226 26 H -0.205 1.205 27 H -0.243 1.243 28 H -0.187 1.187 29 C 0.028 3.972 30 C -0.145 4.145 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.246 0.754 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.078 0.922 53 H 0.044 0.956 54 H 0.090 0.910 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.643 1.677 -6.641 27.509 hybrid contribution 1.227 0.159 -0.118 1.243 sum -25.416 1.835 -6.759 26.363 Atomic orbital electron populations 1.22941 0.79985 1.03621 1.00593 1.87876 1.21029 1.28593 1.95214 1.22164 0.94983 0.84016 0.95738 0.91827 1.21994 1.01343 0.97045 0.96918 1.21416 0.96469 0.96214 1.00747 1.21711 0.97537 1.01815 0.94883 1.20730 0.94958 0.96084 0.96048 0.91366 1.21779 0.98227 0.92930 1.04521 1.21131 0.80378 0.92202 0.76421 1.90641 1.60088 1.45913 1.49022 1.46143 1.21558 1.10480 1.59492 1.21220 0.93448 0.83724 1.00236 1.21729 0.93229 0.97940 0.99495 0.90879 1.21362 0.96342 0.95143 1.00813 1.21908 0.95927 1.00066 0.98717 1.21430 0.96544 0.86171 0.96783 1.44484 1.18689 1.01541 1.69674 1.18893 0.88849 0.89335 1.40197 0.92406 1.25869 0.97455 0.99524 1.00311 1.69950 1.07654 1.38010 1.44668 0.85947 0.77199 0.79595 0.79863 1.20507 1.24305 1.18691 1.21102 0.83818 0.98852 0.93457 1.21584 0.95166 0.96512 1.01200 0.93462 0.88679 0.93359 0.91453 0.91663 0.92124 0.91407 0.91891 0.92144 0.87334 0.86689 0.75383 0.92271 0.91241 0.91655 0.89890 0.90085 0.92637 0.95225 0.93685 0.93090 0.92205 0.95623 0.90996 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.22 10.35 -148.98 -1.54 -8.76 16 3 C 0.09 1.39 2.61 30.59 0.08 1.47 16 4 H 0.06 0.93 7.79 -2.39 -0.02 0.92 16 5 C -0.14 -2.05 5.54 30.59 0.17 -1.88 16 6 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 7 C -0.12 -2.30 4.94 30.59 0.15 -2.15 16 8 C -0.06 -1.01 1.84 -10.81 -0.02 -1.03 16 9 H 0.07 1.32 7.95 -2.39 -0.02 1.30 16 10 C -0.14 -2.18 5.18 29.85 0.15 -2.03 16 11 C 0.51 11.65 7.55 87.65 0.66 12.31 16 12 O -0.58 -16.95 13.97 -3.04 -0.04 -16.99 16 13 N -0.72 -16.00 5.33 -463.06 -2.47 -18.47 16 14 C 0.14 3.31 5.07 86.38 0.44 3.75 16 15 C -0.10 -2.84 2.37 -10.72 -0.03 -2.86 16 16 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.10 -2.54 5.17 30.62 0.16 -2.39 16 18 C -0.13 -3.96 6.08 30.67 0.19 -3.78 16 19 C 0.12 4.72 4.19 86.36 0.36 5.08 16 20 N -0.62 -27.80 2.77 -699.08 -1.94 -29.74 16 21 C -0.24 -13.33 10.04 84.03 0.84 -12.48 16 22 H 0.06 3.41 8.05 -2.91 -0.02 3.39 16 23 C -0.04 -2.13 5.24 84.86 0.44 -1.69 16 24 N -0.96 -59.39 13.97 21.65 0.30 -59.09 16 25 Si 0.94 46.41 24.35 68.60 1.67 48.08 16 26 H -0.28 -13.00 6.70 99.48 0.67 -12.33 16 27 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 28 H -0.26 -12.37 6.45 99.48 0.64 -11.73 16 29 C 0.15 5.38 5.60 86.36 0.48 5.86 16 30 C -0.11 -1.64 4.85 30.58 0.15 -1.49 16 31 H 0.05 0.47 7.87 -2.39 -0.02 0.45 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.51 5.95 -2.38 -0.01 1.50 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.41 8.14 -2.38 -0.02 1.40 16 42 H 0.41 8.12 7.70 -92.71 -0.71 7.40 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.03 1.19 6.98 -2.39 -0.02 1.17 16 50 H 0.04 2.07 4.49 -2.39 -0.01 2.06 16 51 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 52 H 0.06 2.07 7.14 -2.39 -0.02 2.06 16 53 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 55 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -69.55 410.62 1.65 -67.90 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.02 Total: 20.47 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.64 Total: -3.40 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.11 Total: -107.30 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.58 Total: -25.76 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -69.55 1.65 -67.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359580771.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.144 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds