Wall clock time and date at job start Tue Mar 31 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00662 * 2 1 4 4 H 1.09004 * 109.46151 * 29.99923 * 3 2 1 5 5 C 1.52996 * 109.47103 * 270.00535 * 3 2 1 6 6 C 1.53005 * 109.46957 * 299.99601 * 5 3 2 7 7 C 1.53002 * 109.46885 * 300.00134 * 6 5 3 8 8 C 1.52990 * 109.47141 * 60.00097 * 7 6 5 9 9 H 1.09005 * 109.47230 * 59.99939 * 8 7 6 10 10 C 1.53002 * 109.47141 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47057 * 294.99788 * 10 8 7 12 12 O 1.21286 * 120.00251 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00330 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00321 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47048 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.49448 * 304.93299 * 15 14 13 17 17 C 1.53041 * 109.49428 * 184.84091 * 15 14 13 18 18 C 1.53045 * 109.53921 * 178.68500 * 17 15 14 19 19 C 1.53193 * 109.31119 * 61.36041 * 18 17 15 20 20 N 1.46934 * 108.77564 * 305.36852 * 19 18 17 21 21 C 1.36938 * 120.62682 * 233.58530 * 20 19 18 22 22 H 1.07996 * 119.99644 * 152.31364 * 21 20 19 23 23 C 1.38808 * 120.00193 * 332.30762 * 21 20 19 24 24 N 1.31623 * 120.00222 * 342.60556 * 23 21 20 25 25 Si 1.86804 * 119.99897 * 162.59994 * 23 21 20 26 26 H 1.48495 * 109.47104 * 94.35144 * 25 23 21 27 27 H 1.48497 * 109.47110 * 214.35222 * 25 23 21 28 28 H 1.48503 * 109.46779 * 334.34959 * 25 23 21 29 29 C 1.46926 * 118.73498 * 53.61006 * 20 19 18 30 30 C 1.52991 * 109.47241 * 150.00198 * 3 2 1 31 31 H 1.08993 * 109.47700 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46926 * 300.00222 * 1 2 3 33 33 H 1.09000 * 109.47448 * 59.99665 * 1 2 3 34 34 H 1.08996 * 109.47290 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47468 * 59.99321 * 5 3 2 36 36 H 1.09007 * 109.46834 * 180.02562 * 6 5 3 37 37 H 1.08992 * 109.47444 * 60.00143 * 6 5 3 38 38 H 1.09001 * 109.46718 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47109 * 299.99961 * 7 6 5 40 40 H 1.08998 * 109.47160 * 54.99688 * 10 8 7 41 41 H 1.09004 * 109.47312 * 175.00218 * 10 8 7 42 42 H 0.97004 * 119.99930 * 0.02562 * 13 11 10 43 43 H 1.08998 * 109.46927 * 300.00055 * 14 13 11 44 44 H 1.09004 * 109.46844 * 60.00155 * 14 13 11 45 45 H 1.09005 * 109.46035 * 298.69917 * 17 15 14 46 46 H 1.08995 * 109.46617 * 58.66009 * 17 15 14 47 47 H 1.08999 * 109.49112 * 301.41375 * 18 17 15 48 48 H 1.08991 * 109.50083 * 181.31307 * 18 17 15 49 49 H 1.09001 * 109.58374 * 185.58312 * 19 18 17 50 50 H 1.09002 * 109.70314 * 65.22257 * 19 18 17 51 51 H 0.96995 * 119.99572 * 180.02562 * 24 23 21 52 52 H 1.09001 * 109.58090 * 186.60275 * 29 20 19 53 53 H 1.08993 * 109.58546 * 66.18437 * 29 20 19 54 54 H 1.09001 * 109.47313 * 180.02562 * 30 3 2 55 55 H 1.09007 * 109.47147 * 299.99981 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.1514 0.7972 -2.1638 7 6 4.5001 0.7550 -1.4425 8 6 4.2927 0.2891 -0.0001 9 1 3.8493 -0.7067 -0.0001 10 6 5.6414 0.2462 0.7209 11 6 6.5177 -0.8023 0.0854 12 8 6.1043 -1.4511 -0.8522 13 7 7.7611 -1.0185 0.5583 14 6 8.6131 -2.0374 -0.0598 15 6 9.9618 -2.0804 0.6613 16 1 10.4064 -1.0852 0.6610 17 6 10.8946 -3.0575 -0.0579 18 6 12.2549 -3.0767 0.6433 19 6 12.0738 -3.5550 2.0873 20 7 11.0685 -2.7079 2.7435 21 6 11.3505 -2.0804 3.9276 22 1 10.8505 -1.1576 4.1820 23 6 12.2788 -2.6305 4.8007 24 7 12.6320 -3.8924 4.6765 25 14 13.0269 -1.5799 6.1521 26 1 12.2502 -1.7584 7.4051 27 1 14.4347 -1.9942 6.3791 28 1 12.9904 -0.1519 5.7462 29 6 9.7548 -2.5475 2.1054 30 6 3.3589 1.2631 0.7212 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 2.6607 2.7672 -1.4425 35 1 1.2569 1.8014 -1.9563 36 1 3.2995 1.1295 -3.1914 37 1 2.7081 -0.1984 -2.1638 38 1 5.1654 0.0614 -1.9567 39 1 4.9435 1.7508 -1.4425 40 1 6.1257 1.2197 0.6440 41 1 5.4843 0.0005 1.7712 42 1 8.0919 -0.4994 1.3080 43 1 8.1292 -3.0111 0.0171 44 1 8.7699 -1.7915 -1.1101 45 1 10.4605 -4.0571 -0.0356 46 1 11.0240 -2.7411 -1.0928 47 1 12.6783 -2.0723 0.6431 48 1 12.9260 -3.7551 0.1168 49 1 13.0216 -3.4765 2.6198 50 1 11.7370 -4.5917 2.0915 51 1 13.2804 -4.2768 5.2869 52 1 9.1725 -1.8041 2.6500 53 1 9.2279 -3.5016 2.1090 54 1 3.8022 2.2589 0.7216 55 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359580772.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:23 Heat of formation + Delta-G solvation = -115.749559 kcal Electronic energy + Delta-G solvation = -30234.325233 eV Core-core repulsion = 26269.488269 eV Total energy + Delta-G solvation = -3964.836963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.13264 -40.07015 -39.28219 -37.13599 -36.13976 -34.63718 -33.36803 -32.29640 -31.87046 -31.11912 -28.51185 -27.32359 -27.22621 -26.22764 -23.83464 -23.43724 -22.93170 -22.21108 -21.27106 -20.53945 -20.43298 -18.68438 -17.90093 -17.19466 -16.88445 -16.80741 -16.59021 -16.44798 -16.16303 -15.84176 -15.73947 -15.44902 -15.04619 -14.65947 -14.53294 -14.49162 -14.25776 -14.00982 -13.74048 -13.61979 -13.41483 -13.28766 -13.00478 -12.96809 -12.85969 -12.68026 -12.51726 -12.47605 -12.24636 -12.12395 -11.96538 -11.85800 -11.81628 -11.57662 -11.42848 -11.32690 -11.17310 -11.15108 -11.07205 -10.52213 -10.48138 -10.31645 -9.96166 -8.67432 -7.85894 -5.31243 1.47520 1.49400 1.59063 1.76378 2.33739 2.52188 2.97658 3.29042 3.60952 3.73842 3.79485 3.90106 4.00288 4.02300 4.03117 4.09607 4.23132 4.32799 4.40934 4.43296 4.50221 4.54976 4.59253 4.59788 4.62574 4.66176 4.73904 4.77507 4.78158 4.85855 4.89139 4.89934 4.90708 4.93721 5.01620 5.01963 5.10435 5.11129 5.24428 5.32326 5.33996 5.36573 5.40005 5.42361 5.49620 5.57074 5.62659 5.67716 5.68631 5.78723 6.39826 6.40984 6.65833 7.15673 7.36650 7.87222 8.39569 9.20629 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.002088 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.914451 B =13403.614537 C =14392.852217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.084 3.916 4 H 0.077 0.923 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.061 4.061 9 H 0.050 0.950 10 C -0.134 4.134 11 C 0.507 3.493 12 O -0.580 6.580 13 N -0.723 5.723 14 C 0.138 3.862 15 C -0.098 4.098 16 H 0.078 0.922 17 C -0.098 4.098 18 C -0.129 4.129 19 C 0.172 3.828 20 N -0.610 5.610 21 C -0.259 4.259 22 H 0.072 0.928 23 C -0.055 4.055 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.266 1.266 29 C 0.153 3.847 30 C -0.109 4.109 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.411 0.589 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.052 0.948 50 H -0.009 1.009 51 H 0.248 0.752 52 H 0.059 0.941 53 H 0.002 0.998 54 H 0.098 0.902 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.026 14.583 -11.699 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.080 4.080 9 H 0.069 0.931 10 C -0.173 4.173 11 C 0.295 3.705 12 O -0.461 6.461 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.136 4.136 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.333 5.333 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.250 4.250 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.190 1.190 29 C 0.027 3.973 30 C -0.146 4.146 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.247 0.753 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.009 0.991 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.020 0.980 54 H 0.117 0.883 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.096 13.874 -12.254 27.322 hybrid contribution 0.608 -0.059 1.235 1.377 sum -19.488 13.815 -11.020 26.307 Atomic orbital electron populations 1.22886 0.80507 1.03107 1.00566 1.87959 1.20494 1.28953 1.95140 1.22266 0.94972 0.84355 0.95766 0.90525 1.22018 0.99863 0.99652 0.95831 1.21342 0.95474 0.99287 0.98678 1.21636 0.97290 1.00976 0.95394 1.20699 0.93132 0.99436 0.94737 0.93098 1.21830 0.95277 0.98726 1.01495 1.21308 0.81869 0.84316 0.83002 1.90651 1.74039 1.51025 1.30353 1.46111 1.14907 1.39793 1.36669 1.21190 0.89519 0.91216 0.96687 1.21695 0.94223 1.00345 0.95616 0.90395 1.21347 0.94723 0.98679 0.98876 1.21993 0.97264 1.01020 0.96564 1.20635 0.93260 0.90702 0.90743 1.44331 1.10040 1.56391 1.22508 1.19547 1.21885 1.02313 0.95168 0.91008 1.25830 1.02842 0.96190 1.00160 1.70210 1.35709 1.12394 1.40074 0.85269 0.77174 0.78943 0.79108 1.21403 1.22207 1.19038 1.21016 0.86877 0.97165 0.92223 1.21729 0.93390 1.00580 0.98924 0.89725 0.93050 0.93497 0.89502 0.91728 0.92109 0.93788 0.92930 0.91228 0.86314 0.87372 0.75273 0.93188 0.91364 0.92926 0.90259 0.92686 0.91328 0.92965 0.99120 0.94246 0.92278 0.97983 0.88349 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -7.87 9.00 -148.98 -1.34 -9.21 16 3 C 0.08 1.21 2.92 30.59 0.09 1.30 16 4 H 0.08 0.81 7.79 -2.38 -0.02 0.79 16 5 C -0.14 -1.85 5.63 30.59 0.17 -1.68 16 6 C -0.11 -2.06 5.78 30.60 0.18 -1.89 16 7 C -0.12 -2.33 4.94 30.59 0.15 -2.18 16 8 C -0.06 -1.20 1.69 -10.80 -0.02 -1.22 16 9 H 0.05 1.38 7.49 -2.38 -0.02 1.36 16 10 C -0.13 -2.36 5.18 29.85 0.15 -2.21 16 11 C 0.51 13.08 7.55 87.66 0.66 13.74 16 12 O -0.58 -19.61 13.97 -3.05 -0.04 -19.65 16 13 N -0.72 -17.80 5.33 -463.05 -2.47 -20.27 16 14 C 0.14 3.86 5.07 86.38 0.44 4.30 16 15 C -0.10 -3.06 2.38 -10.72 -0.03 -3.08 16 16 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 17 C -0.10 -3.06 5.17 30.62 0.16 -2.90 16 18 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 19 C 0.17 8.32 5.31 86.36 0.46 8.77 16 20 N -0.61 -30.00 2.99 -699.11 -2.09 -32.09 16 21 C -0.26 -13.88 9.58 84.03 0.81 -13.07 16 22 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 23 C -0.06 -3.06 4.91 84.86 0.42 -2.64 16 24 N -0.94 -55.65 11.19 21.65 0.24 -55.40 16 25 Si 0.97 44.16 29.59 68.60 2.03 46.19 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 27 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 C 0.15 6.05 5.60 86.36 0.48 6.54 16 30 C -0.11 -1.52 4.95 30.59 0.15 -1.37 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.52 8.09 -2.39 -0.02 0.51 16 33 H 0.05 0.51 7.87 -2.39 -0.02 0.49 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.81 7.87 -2.39 -0.02 0.79 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.04 1.03 7.68 -2.39 -0.02 1.01 16 38 H 0.05 1.40 5.95 -2.39 -0.01 1.39 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.41 8.67 7.70 -92.71 -0.71 7.96 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 50 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 52 H 0.06 2.19 7.13 -2.39 -0.02 2.18 16 53 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 54 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 55 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -70.44 415.15 2.14 -68.30 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.13 Total: 22.71 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.69 Total: -0.57 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.32 Total: -107.76 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.38 Total: -28.86 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.44 2.14 -68.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359580772.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.451 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds